A MLCT-switched photochromic copper(II) coordination polymer with 1,2-bis(2′-methyl-5′-(4″-pyridyl)-3′-thienyl)perfluorocyclopentene in crystalline phase

A novel Cu(II) coordination polymer with photochromic 1,2-bis(2′-methyl-5′-(4″-pyridyl)-3′-thienyl)perfluorocyclopentene (BM-4-PTP) was prepared and crystallographically characterized. Its photochromic behavior as well as magnetic property was investigated in crystalline phase. In complex [Cu(BM-4-PTP)Br₂(DMF)₂] (1), each copper atom is bridged by two N atoms of BM-4-PTP, two Br atoms from anions and two O atoms of DMF in an slightly distorted octahedral geometry. The basal planar center is in turn linked by bidentate ligand forming a 1-D polymeric chain. Free ligand showed typical spectral changes upon appropriate optical excitation, indicating the reversible photochromism in crystalline phase. Complex 1 occurred reversible photoisomerization not only through the π-π^∗ transition but also the MLCT transition in crystalline phase. On the other hand, the magnetic property of complex 1 has been investigated by means of ESR. The spectra slightly and reversibly changed in response to UV and visible light supporting the normal photoreactivity in crystalline phase.     

Coordination properties of 3′,5′-cyclic adenosine monophosphate towards copper(II) ions

The metal binding ability of 3′,5′-cyclic adenosine monophosphate (3′,5′-cAMP) molecule using copper(II) ion, as an example of biologically available divalent metal ion, was investigated by potentiometry, EPR and differential spectroscopy (UV-Vis, CD). One complex with stoichiometry Cu(3′,5′-cAMP)⁺ was found, where Cu(II) ion is bound by N-7 nitrogen of adenine moiety.     

Impact of histidine residue on chelating ability of 2'-deoxyriboadenosine

Copper(II) complexes with a new chelator-type nucleoside-histidine modified 2′-deoxyriboadenosine (N-[(9-β-D-2′-deoxyribofuranosylpurin-6-yl)-carbamoyl]histidine) were studied by potentiometric and spectroscopic (UV-visible, CD, EPR) techniques, in conjunction with computer modeling optimization. The ligand can act as bidentate or tridentate depending on pH range. In acidic pH a very stable dimeric complex Cu₂L₂ predominates with coordination spheres of both metal ions composed of oxygen atoms from carboxylic groups, one oxygen atom from ureido group and two nitrogen atoms derived from purine base and histidine ring. Above pH 5, deprotonation of carbamoyl nitrogens leads to the formation of CuL₂, Cu₂L₂H_− 1 and Cu₂L₂H_− 2 species. The CuL₂H_− 1 and CuL₂H_− 2 complexes with three or four nitrogens in Cu(II) coordination sphere have been detected in alkaline medium.Our findings suggest that N-[(9-beta-D-2′-deoxyribofuranosylpurin-6-yl)-carbamoyl]histidine chelates copper(II) ions very efficiently. The resulting complex might be used as an alternative base-pairing mode in which hydrogen-bonded base pairs present in natural DNA are replaced by metal-mediated ones.     

Alteration of molecular conformations and spectral properties for nickel(II), zinc(II) and copper(II) complexes having 3,8-di(thiophen-2′,2′′-yl)-1,10-phenanthroline ligands

Four transition metal complexes of 3,8-di(thiophen-2′,2″-yl)-1,10-phenanthroline (dtphen), formulated as [Ni(dtphen)₂(H₂O)₂]·(ClO₄)₂ (1), [Zn(dtphen)₂(H₂O)]·(ClO₄)₂ (2) [Cu(dtphen)₂(H₂O)]·(ClO₄)₂ (3), [Cu(dtphen)(phen)₂]·(ClO₄)₂ (4) (phen = 1,10-phenanthroline) with different metal-to-ligand ratios, were synthesized and characterized herein. The X-ray single-crystal diffraction studies of 1-4 exhibit that different molecular configurations for the dtphen ligand can be observed where the side thiophene rings adopt the trans/trans, trans/cis, trans/disorder and cis/cis conformations relative to the central 1,10-phenanthroline unit in different compounds. Fluorescence emission spectra of 1-4 in methanol show that the fluorescence emission of 2 is much stronger than the other three metal complexes, which is mainly due to its full d¹⁰ electronic configuration of Zn(II) ion.     

Synthesis, structure and DNA cleavage activity of two 4,4′-dimethyl-2,2′-bipyridyl manganese(II) complexes

Two new mononuclear Mn(II) complexes, Mn(dmbpy)₂(OCN)₂ (1) and Mn(dmbpy)₂(dca)₂ (2) (dmbpy = 4,4′-dimethyl-2,2′-bipyridine, dca = dicyanamide), have been synthesized and characterized by IR, elemental analysis, and single crystal X-ray analysis. Both complexes have similar molecular structures. The coordination sphere of the Mn(II) ion in 1 or 2 is a seriously distorted octahedron formed by two dmbpy ligands and two OCN⁻ or dca anions in cis positions. For both complexes, the most striking feature is that the mononuclear molecules are linked together by plentiful weak C-H?N hydrogen bonds into a compact 3D supramolecular structure. DNA cleavage studies show that the complexes can promote plasmid DNA cleavage in the presence of H₂O₂ under physiological conditions, and their cleavage activities are obviously both pH value and complex concentration-dependent. The cleavage mechanism between the complexes and plasmid DNA is likely to involve hydroxyl radicals as reactive oxygen species.     

The (2′S,7′S)-O-(2-methylbutanoyl)-columbianetin as a novel allergic rhinitis-control agent

Aims

The (2′S,7′S)-O-(2-methylbutanoyl)-columbianetin (OMC) is a novel secondary metabolite extracted from Corydalis heterocarpa, which has long been used as a folk medicine for various inflammatory diseases in Korea. We examined the effect of OMC on allergic rhinitis (AR).

Main methods

We assessed the therapeutic effects and regulatory mechanisms of OMC on the phorbol 12-myristate 13-acetate plus A23187-stimulated mast cell line, HMC-1 cells and ovalbumin (OVA)-induced AR models.

Key findings

OMC significantly decreased the releases of histamine and tryptase from stimulated HMC-1 cells. The degranulation process, characterized by morphological extension of the filopodia on the surface and membrane ruffling, was strongly induced in the stimulated-HMC-1 cell, however OMC suppressed the morphological changes in stimulated-HMC-1 cells. OMC reduced the production and mRNA expression of inflammatory cytokines. These inhibitory actions by OMC were dependent on the regulation of mitogen-activated protein kinases, nuclear factor-κB, and caspapase-1 signaling pathways. In the AR animal model, the increased rub scores and AR biomarkers (histamine and IgE) in ovalbumin (OVA)-sensitized mice were significantly reduced by the administration of OMC. Furthermore, eosinophils and mast cell infiltrations in nasal mucosa tissue were also blocked through the regulation of macrophage-inflammatory protein and intercellular adhesion molecule-1 levels.

Significance

OMC showed the possibility to regulate AR in activated mast cells and OVA-induced AR models. Hence, we suggest that OMC is a powerful and feasible new agent to suppress AR.     

Acetato and formato copper(II) complexes with 4,4′-dimethyl-2,2′-bipyridine and 5,5′-dimethyl-2,2′-bipyridine: Synthesis, crystal structure, magnetic properties and EPR results. A new 1D polymeric water chain

By the reactions of Cu(AcO)₂·H₂O and Cu(HCOO)₂·4H₂O with 4,4′-dimethyl-2,2′-bipyridine and 5,5′-dimethyl-2,2′-bipyridine the compounds [Cu(AcO)₂(4,4′-Me₂-2,2′-bipy)]·1/2H₂O (1), [Cu(AcO)₂(5,5′-Me₂-2,2′-bipy)(H₂O)] (2), [Cu(HCOO)(μ-HCOO)(4,4′-Me₂-2,2′-bipy)]_n·nH₂O (3) and [Cu(HCOO)(μ-HCOO)(5,5′-Me₂-2,2′-bipy)]_n·2nH₂O (4) were obtained. In the acetate complexes, 1 and 2, the geometry around copper is distorted octahedral and square pyramidal, respectively. Dimeric units of different geometry are formed in both cases through hydrogen bonds in which non-coordinated (in 1) and coordinated (in 2) water molecules are involved. The structures of 3 and 4 consist of polymeric monodimensional chains of square pyramidal copper units linked by axial-equatorial syn-anti (3) or anti-anti (4) bridging formate groups. Water molecules form hydrogen bonds with formate groups of the same chain in compound 3. In compound 4 the water molecules link the polymeric contiguous chains of complex through hydrogen bonds with oxygen atoms of formate groups and they are also linked between them, forming monodimensional water chains which run parallel to the complex chains. Sheets parallel to the ac plane are formed by alternating chains of water and polymeric complex. Magnetic properties and EPR spectra for these compounds have been studied.     

Preparation and photophysical studies of copper(I) and ruthenium(II) complexes of 4,4′-bis(3,5-dimethoxyphenyl)-6,6′-dimethyl-2,2′-bipyridine

We report the synthesis of a new ligand, 4,4′-bis(3,5-dimethoxyphenyl)-6,6′-dimethyl-2,2′-bipyridine, optimised for binding to copper(I) and with pendant functionality that can eventually be developed into metallodendritic structures. The synthesis and photophysical properties of complexes with copper(I) and ruthenium(II) are reported. The solid state structure of the complex [Cu(1)₂][PF₆] · MeCN (1 = 4,4′-bis(3,5-dimethoxyphenyl)-6,6′-dimethyl-2,2′-bipyridine) is also described.     

Cobalt(II) and nickel(II) coordination polymers constructed from P,P′-diphenylmethylenediphosphinic acid (H2pcp) and 4,4′-bipyridine (bipy): Structural isomerism in [Co(pcp)(bipy)0.5(H2O)2]

The P,P′diphenylmethylenediphosphinic acid (H₂pcp) reacts with Co(ClO₄)₂ · 6H₂O and 4,4′-bipyridine to give a mixture of two polymeric isomers of formula [Co(pcp)(bipy)_0.5(H₂O)₂], {red (1) and pink (2)} and the new violet hybrid [Co(Hpcp)₂] (3). The pure red and violet species have been obtained by the reaction of H₂pcp with Co(CH₃COO)₂ · 4H₂O and bipy or with Co(ClO₄)₂ · 6H₂O, respectively. The analogous reaction of Ni(CH₃COO)₂ · 4H₂O or Ni(ClO₄)₂ · 6H₂O with H₂pcp and bipy affords only the [Ni(pcp)(bipy)_0.5(H₂O)₂] species (4). The two cobalt isomers present different structural arrangements. Whereas the red isomer (1) shows an undulated 2D layered structure, the pink one (2) forms an infinite monodimensional strand. Both the architectures extend to higher dimensions through hydrogen bonding interactions. The nickel derivative is isomorphous with the red cobalt isomer. The violet [Co(Hpcp)₂] (3), which is isomorphous with the complexes of the reported series [M(Hpcp)₂], M = Ca(II), Mg(II), presents a monodimensional polymeric structure. Compounds 1 and 4 show a very similar thermal behaviour, the two water molecules being lost in the temperature range 25-150 and 160-320 °C, respectively. Temperature dependent X-ray powder diffractometry (TDXD) has been performed on compound 1 in order to follow the structural transformations that occur during the heating process.     

2′-5′-Oligoadenylate synthetase is activated by a specific RNA sequence motif

2′-5′-Oligoadenylate synthetase plays a central role in the cellular innate antiviral response. Although activation of 2′-5′-oligoadenylate synthetase by double stranded RNA was discovered more than 30 years ago it is still unclear which sequence features are required by an RNA to activate the enzyme. A pool of chemically synthesized short double stranded RNAs of specific sequence was used to probe 2′-5′-oligoadenylate synthetase activation. It was found that activating double stranded RNAs contain the following motif: NNWWNNNNNNNNNWGN. Verification of this sequence motif in a pool of 102 small double stranded RNAs demonstrated a false positive prediction rate of 8% and a false negative prediction rate of 12%. The sequence motif identified provides mechanistic insight into the mechanism of 2′-5′-oligoadenylate synthetase activation by double stranded RNA and allows theoretical predictions whether a given RNA molecule has the capability to activate 2′-5′-oligoadenylate synthetase.     

4,4′-Bis(tert-butyl)-2,2′-bipyridinedichlorometal(II) - Synthesis, structure and EPR spectroscopy

Due to the better solubility of the 4,4′-substituted bipyridine ligand a series of 4,4′-bis(tert-butyl)-2,2′-bipyridinedichlorometal(II) complexes, [M(tbbpy)Cl₂], with M = Cu, Ni, Zn, Pd, Pt was synthesised and characterised. The blue copper complex 4,4′-bis(tert-butyl)-2,2′-bipyridinedichlorocopper(II) was isolated in two different polymorphic forms, as prisms 1 with a solvent inclusion and solvent-free as needles 2. Both structures were determined by X-ray structure analysis. They crystallise in the monoclinic space group P2₁/c with four molecules in the unit cell, but with different unit cells and packing motifs. Whereas in the prisms 1, with the unit cell parameters a = 12.1613(12), b = 10.6363(7), c = 16.3074(15) Å, β = 94.446(8)°, the packing is dominated by intra- and intermolecular hydrogen bonds, in the needles 2, with a = 7.738(1), b = 18. 333(2), c = 13.291(3) Å, β = 97.512(15)°, only intramolecular hydrogen bonds appear and the complex molecules are arranged in columns which are stabilised by π-π-stacking interactions. In both complexes the copper has a tetrahedrally distorted coordination sphere. These copper complexes were also studied by EPR spectroscopy in solution, as frozen glass and diamagnetically diluted powder with the analogue [Pd(tbbpy)Cl₂] as host lattice.     

Syntheses, crystal structures and properties of Cd(II) and Co(II) complexes with 4,4′-dipyridylsulfide ligand

Two new coordination polymers [Cd(dps)₂Cl₂] (1) and [Co(dps)₂(H₂O)₂]·(abs)₂(H₂O)₂ (2) (dps = 4, 4′-dipyridylsulfide, Habs = 4-amino benzenesulfonic acid) have been synthesized under similar conditions and characterized by elemental analysis, fluorescence spectra and single crystal X-ray diffraction. Compound 1 displays a dps-bridged 2D puckered, grid-like layer, which is further linked by C-H?Cl hydrogen bonds to form a 3D supramolecular architecture. Compound 2 shows a dps-bridged double-stranded chain structure, which is extended by N-H?O and O-H?O hydrogen bonds generating a 3D network. Solid-state fluorescence results reveal that both complexes can emit strong emission bands, at 467 nm and 518 nm for 1 and 344 nm for 2, respectively. Magnetic measurements show that there are weak antiferromagnetic interactions between the adjacent Co(II) ions in 2.     

Binding of 2′-Amino-2′-Deoxycytidine-5′-Triphosphate to Norovirus Polymerase Induces Rearrangement of the Active Site

Crystal structures of a genogroup II.4 human norovirus polymerase bound to an RNA primer-template duplex and the substrate analogue 2′-amino-2′-deoxycytidine-5′-triphosphate have been determined to 1.8 Å resolution. The alteration of the substrate-binding site that is required to accommodate the 2′-amino group leads to a rearrangement of the polymerase active site and a disruption of the coordination shells of the active-site metal ions. The mode of binding seen for 2′-amino-2′-deoxycytidine-5′-triphosphate suggests a novel molecular mechanism of inhibition that may be exploited for the design of inhibitors targeting viral RNA polymerases.     

Anionic effects on the formation of tridentate 4′-chloro-2,2′:6′,2″-terpyridine copper(II) complexes having 1:1 or 1:2 ratio of metal and ligand and their crystal symmetry

A facile synthetic procedure has been used to prepare one five-coordinate and four six-coordinate copper(II) complexes of 4′-chloro-2,2′:6′,2″-terpyridine (tpyCl) ligand with different counterions (, , , , and ) in high yields. They are formulated as [Cu(tpyCl-κ³N,N′,N′′)(SO₄-κO)(H₂O-κO)] · 2H₂O (1), trans-[Cu(tpyCl-κ³N,N′,N″)(NO₃-κO)₂(H₂O-κO)] (2), [Cu(tpyCl-κ³N,N′,N″)₂](BF₄)₂ (3), [Cu(tpyCl-κ³N,N′,N″)₂](PF₆)₂ (4) and [Cu(tpyCl-κ³N,N′,N″)₂](ClO₄)₂ (5) and versatile interactions in supramolecular level including coordinative bonding, O-H?O, O-H?Cl, C-H?F, and C-H?Cl hydrogen bonding, π-π stacking play essential roles in forming different frameworks of 1-5. It is concluded that the difference of coordination abilities of the counterions used and the experimental conditions codominate the resulting complexes with 1:1 or 1:2 ratio of metal and ligand.     

Synthesis, structure, photoluminescence and theoretical studies of an In(III) complex with 2-(2′-hydroxylphenyl)benzoxazole

The synthesis and characterization of [In(pbx)₃] (1) (Hpbx = 2-(2′-hydroxylphenyl)benzoxazole) are presented. The ground and low lying excited electronic states in 1 are studied using density functional theory level (DFT). The optimized geometry is compared to the experimentally observed structure. Time-dependent density functional theory level (TDDFT) is employed to investigate the excited singlet states. The calculated energies of the low lying singlet states in 1 are in considerable agreement with the experimental data. All the low lying transitions are categorized as π → π∗ ligand-to-ligand charge transfer transitions (LLCT) in nature. The emissive state of 1 is assigned as a singlet metal-perturbed π → π∗ ligand-to-ligand charge transfer transition (LLCT).     

Ruthenium(II/III) mediated transformation of 1,2-bis(2′-pyridylmethyleneimino)benzene (L) to 2-(2′-benzimidazolyl)pyridine (L′H) and its in situ formed complexes with Ru(II): X-ray structure of trans-[Ru(PPh3)2(L′H)2](ClO4)2

A series of ruthenium (II) complexes of formulae trans-[Ru(PPh₃)₂(L′H)₂](ClO₄)₂ (1), [Ru(bpy)(L′H)₂](ClO₄)₂ (2), [Ru(bpy)₂(L′H)](ClO₄)₂ (3), cis-[Ru(DMSO)₂(L′H)₂]Cl₂ (4), and [Ru(L′H)₃](PF₆)₂ (5) (where L′H = 2-(2′-benzimidazolyl)pyridine) have been synthesized by reaction of the appropriate ruthenium precursor with 1,2-bis(2′-pyridylmethyleneimino)benzene (L). The complexes were characterized by elemental analyses, spectroscopic and electrochemical data. All the complexes were found to be diamagnetic and hence metal is in +2 oxidation state. The molecular structure of trans-[Ru(PPh₃)₂(L′H)₂](ClO₄)₂ has been determined by the single crystal X-ray diffraction studies. The molecular structure shows that Ru(II) is at the center of inversion of an octahedron with N₄P₂ coordination sphere. The ligand acts as a bidentate N,N′donor. The electronic spectra of the complexes display intense MLCT bands in the visible region.Cyclic voltammetric studies show quasi-reversible oxidative response at 0.99-1.32 V (vs Ag/AgCl reference electrode) due to Ru(III)/Ru(II) couple.     

Synthesis and chemical characterization of Cu, Ni and Zn complexes of 3,5-bis(2′-pyridyl)-1,2,4-oxadiazole and 3-(2′-pyridyl)5-(phenyl)-1,2,4-oxadiazole ligands

The synthesis and structural characterization of Ni^II, Cu^II and Zn^II complexes of two chelating 1,2,4-oxadiazole ligands, namely 3,5-bis(2′-pyridyl)-1,2,4-oxadiazole (bipyOXA) and 3-(2′-pyridyl)5-(phenyl)-1,2,4-oxadiazole (pyOXA), is here reported. The formed hexacoordinated metal complexes are [M(bipyOXA)₂(H₂O)₂](ClO₄)₂ and [M(pyOXA)₂(ClO₄)₂], respectively (M = Ni, Cu, Zn). X-ray crystallography, ¹H and ¹³C NMR spectroscopy and C, N, H elemental analysis data concord in attributing them an octahedral coordination geometry. The two coordinated pyOXA ligands assume a trans coplanar disposition, while the two bipyOXA ligands are not. The latter result is a possible consequence of the formation of H-bonds between the coordinated water molecules and the nitrogen atom of the pyridine in position 5 of the oxadiazole ring. The expected splitting of the d metal orbitals in an octahedral ligand field explains the observed paramagnetism of the d⁸ and d⁹ electron configuration of the nickel(II) and copper(II) complexes, respectively, as determined by the broadening of their NMR spectra.     

Coordination chemistry of Re complexes with 2(2′-pyridyl)benzimidazole

Two new Re(III) and Re(IV) complexes with 2(2′-pyridyl)benzimidazole (pbimz) were prepared and their crystal and molecular structures established by single-crystal X-ray diffraction. Reaction of [ReOCl₂(OEt)(PPh₃)₂] with the ligand gave red cis(Cl),trans(P)-[ReCl₂(PPh₃)₂(pbimz)]Cl (1), while red [ReCl₄(pbimz)] · OPPh₃ (2) was obtained from [ReCl₃(PhC(O)C(O)Ph)(PPh₃)] and pbimz in the presence of perchlorate. The compounds were characterized by elemental analysis, FAB-MS, UV-Vis, IR, NMR spectroscopy and magnetic susceptibility measurements.     

Determination of erythromycin in urine and plasma using microbore liquid chromatography with tris(2,2′-bipyridyl)ruthenium(II) electrogenerated chemiluminescence detection

Erythromycin is determined in both urine and plasma samples using microbore reversed-phase liquid chromatography with tris(2,2′-bipyridyl)ruthenium(II) [Ru(bpy)₃²⁺] electrogenerated chemiluminescence (ECL) detection. Ru(bpy)₃²⁺ is included in the mobile phase thus eliminating band broadening caused by post-column reagent addition. Extra column band broadening is an important concern in microbore liquid chromatography due to the small peak volumes. Erythromycin was studied in both water and biological samples. The detection limit for erythromycin in standards is 0.01 μM or 50 fmol injected with a S/N of 3 and a linear working range that extends four orders of magnitude. Human urine and blood plasma were also studied. Urine samples were diluted and filtered before injection. Ultrafiltration was used to remove protein from blood plasma samples prior to injection. Erythromycin was selectively detected in the body fluid samples without any further sample preparation. The detection limits obtained for erythromycin in urine and plasma are 0.05 and 0.1 μM, respectively, for 5 μl injected on a 150×1 mm I.D. C₁₈ column.     

Repair efficiency of (5′S)-8,5′-cyclo-2′-deoxyguanosine and (5′S)-8,5′-cyclo-2′-deoxyadenosine depends on the complementary base

5′-R and 5′-S diastereoisomers of 8,5′-cyclo-2′-deoxyadenosine (cdA) and 8,5′-cyclo-2′-deoxyguanosine (cdG) containing a base-sugar covalent bond are formed by hydroxyl radicals. R-cdA and S-cdA are repaired by nucleotide excision repair (NER) in mammalian cellular extracts. Here, we have examined seven purified base excision repair enzymes for their ability to repair S-cdG or S-cdA. We could not detect either excision or binding of these enzymes on duplex oligonucleotide substrates containing these lesions. However, both lesions were repaired by HeLa cell extracts. Dual incisions by human NER on a 136-mer duplex generated 24–32 bp fragments. The time course of dual incisions were measured in comparison to cis-anti-B[a]P-N²-dG, an excellent substrate for human NER, which showed that cis-anti-B[a]P-N²-dG was repaired more efficiently than S-cdG, which, in turn, was repaired more efficiently than S-cdA. When NER efficiency of S-cdG with different complementary bases was investigated, the wobble pair S-cdG·dT was excised more efficiently than the S-cdG·dC pair that maintains nearly normal Watson-Crick base pairing. But S-cdG·dA mispair with no hydrogen bonds was excised less efficiently than the S-cdG·dC pair. Similar pattern was noted for S-cdA. The S-cdA·dC mispair was excised much more efficiently than the S-cdA·dT pair, whereas the S-cdA·dA pair was excised less efficiently. This result adds to complexity of human NER, which discriminates the damaged base pairs on the basis of multiple criteria.