甘蔗宿根矮化病病原菌Leifsonia xyli subsp.xyli 基因组学研究进展

综述甘蔗宿根矮化病病原细菌Leifsonia xyli subsp.xyli(Lxx)基因组组成特征、基因组进化、基因组中致病相关基因与寄主适应性等方面的研究进展,并对该病原茵、引起番茄细菌性萎蔫和溃疡的病原细菌、马铃薯环腐病痛原细菌的基因组和致病相关基因进行比较,发现它们存在同源致病基因,如celA、pat1基因,其致病机理可能有相似性.     

甘蔗宿根矮化病多克隆抗体和免疫磁珠的制备

本研究通过制备Lxx(Leifsonia xyli subsp.xyli)免疫磁珠,实现对甘蔗Lxx进行分离,用于病原菌与甘蔗互作的深入研究。以RSD PCR检测呈阳性的感病甘蔗为材料,分离培养Lxx抗原进行多克隆抗体制备,利用磁性Fe3O4纳米粒子与Lxx多克隆抗体偶联制备免疫磁珠。根据菌落的形态特征,并结合PCR验证确认所分离到的菌是甘蔗宿根矮化病的致病菌Lxx,免疫兔子后获得了较好的多克隆抗体,间接ELISA测定Lxx多克隆抗体的效价高于204 800。免疫磁珠外观成球性较好,粒径大小在125-268 nm之间,对菌培养液中Lxx亲和性强分离物可用于进一步的PCR实验。Lxx免疫磁珠的成功制备,能够快速实现Lxx的分离与富集,为Lxx与甘蔗互作时期下甘蔗感病性检测和病原菌的富集提供了便捷高效的技术手段。     

玉米内生杀虫工程菌对玉米螟的离体及活体生物测定

12#Bt/CXC是以能定植在玉米维管束系统的内生菌I>Clavibacter xyli subsp.Cynodon—tis(CXC)为宿主菌,将Bt urstaki的δ—内毒素基因cryIA?整合到其染色体上形成的内生工程菌。以玉米螟Ostrinia furnacalis Guenee为供试昆虫的生测结果表明：在同一浓度下,12^#菌株对玉米螟的毒力均高于野生型Bt菌株HD73和空白对照(最低浓度除外)。浓度最高时12^#处理的死亡率为63%,而m工73为53%,死亡率与浓度呈正相关,相关系数r₁₂^#大于r_HD—73。在用12^#Bt/CXC接种玉米的活体生测中,人工接虫4周后检测,注射接种法效果明显优于种子处理法。不同浓度的注射接种处理,玉米螟幼虫减少率最低70%,最高可达96%,与未处理对照相比差异显著。12#菌剂处理后对玉米螟的生长发育也有抑制作用,虫体重减轻26.4%～44.5%,处理株虫龄平均为2龄,而对照株为4龄。     

连作花生田根际土壤优势微生物的分离和鉴定

【目的】从不同连作年限的花生田根际土壤中分离优势微生物并进行鉴定,为研究花生连作后优势微生物的变化奠定基础。【方法】采用土壤稀释分离法从不同连作年限花生根际土壤中分离优势细菌、真菌和放线菌,结合菌株形态特征、培养性状、生理生化特征及16S rDNA序列分析对细菌、放线菌进行鉴定,通过形态特征、培养特征和分子鉴定方法对优势真菌进行鉴定。【结果】从连作花生田根际土壤中分离鉴定出7种优势细菌、7种优势真菌和7种优势放线菌。7种优势细菌分别为Leifsonia xyli、氯酚节杆菌(Arthrobacterchlorophenolicus)、黄色微杆菌(Microbacterium flavescens)、鞘氨醇单胞菌属(Sphingomonas sp.)、巴斯德菌属(Pasteurella sp.)、简单芽孢杆菌(Bacillus simplex)和巨大芽孢杆菌(Bacillus megaterium)。7种优势真菌分别为枝状枝孢菌(Cladosporium cladosporioides)、产紫青霉(Penicillium purpurogenum)、哈茨木霉有性型(Hypocrea lixii)、Exophiala pisciphila、微紫青霉(Penicillium janthinellum)、曲霉(Aspergillus sp.)和大丽轮枝菌(Verticillium dahliae)。7种优势放线菌分别为紫红链霉菌(Streptomyces violaceoruber)、华丽黄链霉菌(Streptomyces flaveus)、Streptomyces panaciterrae、不产色链霉菌(Streptomyces achromogenes)、假浅灰链霉菌(Streptomyces pseudogriseolus)、纤维素链霉菌(Streptomyces cellulosae)和金色链霉菌(Streptomyces aureus)。【结论】本研究是第一次系统的从连作花生根际土中分离鉴定优势微生物,种植花生后根际土壤中优势微生物的种类发生了明显变化,但变化没有规律。     

微生物学通报1974年总目录

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武汉植物学研究第7卷总目录

第1期(1989年2月)、.尹、.产、,户、.了、.产、,苦、.产、,尹、.产tl 5 13 21 27 29 39 4955了、z‘、了.、矛.、矛‘、.f、沙r、了、J了、、.夕、,了、少、,J、.1、.1、j9 51了77丹O5 6 71‘8 98了‘了、户‘、尹‘、声‘、了、‘r、水稻小抱子发育过程第工、五收缩期的探讨···················································……何国藩林月禅小麦的穗领在系统演化和个体发育中形成过程的初步探讨······································…     

毛百合与山丹幼苗发育的比较形态学

本文对东北产百合属中鳞叶分节的毛百合Lilium dauricumKer-Gawl.和鳞叶不分节的山丹L.pumilum DC.种子的形态、大小、千粒重等特征,种子萌发方式和幼苗发育形态学进行了比较研究。同时对百合属的东北百合L.distichum Nakai、渥丹L.concolor Salisb.、条叶百合L.callo-sum Sieb.et Zucc.、垂花百合L.cernuum Komar.、朝鲜百合L.ama-bile Palibin.等的相应性状作了一般的平行观察,为进一步开展本属的分类工作积累了某些生物学的基础资料。     

7种獐牙菜属植物花粉形态的研究

本文应用光学显微镜和扫描电子显微镜,对龙胆科(Gentianaceae)獐牙菜属(Swertia L.)7种植物(獐牙菜Swertia bimaculata(S.et z.)HK.f.Thoms.、水灵芝S.davidii Franch.、江浙獐牙菜S.hickinii Burkill.、贵州獐牙菜S.kouitchensisFranch.、大籽獐牙菜S.macrosperma C.B.Clarke.、翼梗獐牙菜S.nervosa Wall.、紫红獐牙菜S.punicea Hemsl.)的花粉形态作了比较观察,找出了它们的鉴别特征,阐明了獐牙菜属植物花粉的外壁外层表面纹饰的三种类型为条纹—网状、网状和瘤状雕纹。     

中国淡水微囊藻属常见种类的分类学讨论——以滇池为例

根据中国云南滇池藻类样品的观察结果,对中国分布的淡水微囊藻属Microcystis10个常见种的形态特征进行了描述,同时对它们的分类学进行了讨论,并整理出分类检索表。这10种微囊藻是铜绿微囊藻M.aeruginosa、放射微囊藻M.botrys、坚实微囊藻M.firma、水华微囊藻M.flos-aquae、鱼害微囊藻M.ichthyoblabe、挪氏微囊藻M.novacekii、假丝微囊藻M.pseudofilamentosa、史密斯微囊藻M.smithii、绿色微囊藻M.viridis、惠氏微囊藻M.wesenbergii。最后还讨论了中国报道的其它微囊藻种类的分类学状况。     

植物生态学与地植物学学报 第13卷 总目录

第1期(1989年1月、.尹、产、.声、J‘、矛、产、少1 10 18 28 36 4249矛、J夕飞了、矛、护气了龟矛.、、.了、.户、矛、.口、矛、产‘,︸、产R内O品J Q.4n︸品O丹D亡曰介匕7t才一乙O曰O甘O甘r气r、矛r、矛.、目r、山叮、r、了、植被的PE(可能燕散)指标与植被一气候分类(一)—几     

Construction of a stable expression vector for Leifsonia xyli subsp. cynodontis and its application in studying the effect of the bacterium as an endophytic bacterium in rice

To study the possibility of utilizing genetically engineered Leifsonia xyli subsp. cynodontis (Lxc) as an endophytic bacterium in rice, we constructed an Escherichia coli-Lxc shuttle vector, pLGUS, containing a beta-glucuronidase reporter gene, which was stable both in vitro and in vivo. Lxc grows and expresses the beta-glucuronidase reporter gene in all parts of rice, except for seed. A 2-year field study using three rice varieties from China showed that Lxc inoculation did not have a negative effect on the growth and yield of any of these varieties. Therefore, Lxc has the potential to be used as a benign endophyte for the expression of foreign genes in rice.     

Characterization of the replicon of a 51-kb native plasmid from the gram-positive bacterium Leifsonia xyli subsp. cynodontis

The 4992-bp replicon of a large cryptic plasmid in the gram-positive bacterium Leifsonia xyli subsp. cynodontis was identified and sequenced. The replicon encoded two proteins essential for plasmid replication and stability. The putative replication protein (RepA) is homologous to that of the plasmids in mycobacterial pLR7 family, while the putative ParA protein immediately downstream of RepA is significantly homologous to the Walker-type ATPase required for partition of plasmid and chromosome of the gram-positive bacteria. These two proteins and other ORFs are clustered with the putative promoters and other regulatory sequences, illustrating an efficient organization of the replicon for this novel plasmid.     

Development and Application of Cloned DNA Probes for Clavibacter xyli subsp. xyli, the Causal Agent of Sugarcane Ratoon Stunting

Eco RI restriction fragments of genomic DNA from Clavibacter xyli subsp. xyli (CXX) were ligated with plasmid pUC18 and cloned in Escherichia coli JM109. The cloned DNA inserts from recombinant plasmids were Eco RI-excised and labeled with non-radioactive digoxigenin and used as probes. Ten specific DNA probes, RSD3, 15, 30, 31, 32, 35, 37, 41, 71, and 73 were selected for disease detection and pathogen differentiation. In the specificity tests, all of the 10 CXX DNA, probes differentiated Clavibacter xyli from other bacteria specifically. Seven out of the 10 CXX probes crossreacted with C. x. subsp. cynodontis (CXC) very weakly under moderate stringency wash conditions of hybridization. In the sensitivity tests, all of the 10 DNA probes detected the homologous DNA of CXX from 0.19 to 0.75 ng. To detect various cell numbers of CXX, the DNA probes detected 10⁴ to 10⁵ cells effectively. In Southern hybridizations, distinctly different band patterns were shown when the probes hybridized with DNA from CXX and CXC. Among these probes, RSD3, 15, 30, 31, 35, 37, and 71, efficiently detected CXX present in the sap collected from symptomless sugarcane.     

Establishment of a functional genomics platform for Leifsonia xyli subsp. xyli

Leifsonia xyli subsp. xyli, the causal agent of ratoon stunting disease in sugarcane, is a xylem-limited, nutritionally fastidious, slow growing, gram-positive coryneform bacterium. Because of the difficulties in growing this bacterium in pure culture, little is known about the molecular mechanisms of pathogenesis. Currently, the genome sequence of L. xyli subsp. xyli is being completed by the Agronomical and Environmental Genomes group from the Organization for Nucleotide Sequencing and Analysis in Brazil. To complement this work, we produced 712 Lxx::Tn4431 transposon mutants and sequenced flanking regions from 383 of these, using a rapid polymerase chain reaction-based approach. Tn4431 insertions appeared to be widespread throughout the L. xyli subsp. xyli genome; however, there were regions that had significantly higher concentrations of insertions. The Tn4431 mutant library was screened for individuals unable to colonize sugarcane, and one noncolonizing mutant was found. The mutant contained a transposon insertion disrupting two open reading frames (ORF), one of which had homology to an integral membrane protein from Mycobacterium leprae. Sequencing of the surrounding regions revealed two operons, pro and cyd, both of which are believed to play roles in disease. Complementation studies were carried out using the noncolonizing Lxx::Tn4431 mutant. The noncolonizing mutant was transformed with a cosmid containing 40 kbp of wild-type sequence, which included the two ORF disrupted in the mutant, and several transformants were subsequently able to colonize sugarcane. However, analysis of each of these transformants, before and after colonization, suggests that they have all undergone various recombinant events, obscuring the roles of these ORF in L. xyli subsp. xyli pathogenesis.     

The genome sequence of the gram-positive sugarcane pathogen Leifsonia xyli subsp. xyli

The genome sequence of Leifsonia xyli subsp. xyli, which causes ratoon stunting disease and affects sugarcane worldwide, was determined. The single circular chromosome of Leifsonia xyli subsp. xyli CTCB07 was 2.6 Mb in length with a GC content of 68% and 2,044 predicted open reading frames. The analysis also revealed 307 predicted pseudogenes, which is more than any bacterial plant pathogen sequenced to date. Many of these pseudogenes, if functional, would likely be involved in the degradation of plant heteropolysaccharides, uptake of free sugars, and synthesis of amino acids. Although L. xyli subsp. xyli has only been identified colonizing the xylem vessels of sugarcane, the numbers of predicted regulatory genes and sugar transporters are similar to those in free-living organisms. Some of the predicted pathogenicity genes appear to have been acquired by lateral transfer and include genes for cellulase, pectinase, wilt-inducing protein, lysozyme, and desaturase. The presence of the latter may contribute to stunting, since it is likely involved in the synthesis of abscisic acid, a hormone that arrests growth. Our findings are consistent with the nutritionally fastidious behavior exhibited by L. xyli subsp. xyli and suggest an ongoing adaptation to the restricted ecological niche it inhabits.     

Transformation and transposon mutagenesis of Leifsonia xyli subsp. xyli, causal organism of ratoon stunting disease of sugarcane

Conditions have been developed for genetic transformation and insertional mutagenesis in Leifsonia xyli subsp. xyli (Lxx), the causal organism of ratoon stunting disease (RSD), one of the most damaging and intractable diseases of sugarcane internationally. Transformation frequencies ranged from 1 to 10 colony forming units (CFU)/microg of plasmid DNA using Clavibacter/Escherichia coli shuttle vectors pCG188, pDM302, and pDM306 and ranged from 50 to 500 CFU/microg using cosmid cloning vectors pLAFR3 and pLAFR5-km. The transformation/transposition frequency was 0 to 70 CFU/microg of DNA, using suicide vectors pUCD623 and pSUP2021 containing transposable elements Tn4431 and Tn5, respectively. It was necessary to grow Lxx in media containing 0.1% glycine for electroporation and to amplify large plasmids in a dam-/dcm- E. coli strain and purify the DNA by anion exchange. To keep selection pressure at an optimum, the transformants were grown on nitrocellulose filters (0.2-microm pore size) on media containing the appropriate antibiotics. Transposon Tn4431 containing a promoterless lux operon from Vibrio fischeri and a tetracycline-resistance gene was introduced on the suicide vector pUCD623. All but 1% of the putative transposon mutants produce light, indicating transposition into functional Lxx genes. Southern blot analysis of these transformants indicates predominantly single transposon insertions at unique sites. The cosmid cloning vector pLAFR5-km was stably maintained in Lxx. The development of a transformation and transposon mutagenesis system opens the way for molecular analysis of pathogenicity determinants in Lxx.     

Stability of the delta-endotoxin gene from Bacillus thuringiensis subsp. kurstaki in a recombinant strain of Clavibacter xyli subsp. cynodontis.

Deletion of chromosomally inserted gene sequences from Clavibacter xyli subsp. cynodontis, a xylem-inhabiting endophyte, was studied in vitro and in planta. We found that nonreplicating plasmid pCG610, which conferred resistance to kanamycin and tetracycline and contained segments of C. xyli subsp. cynodontis genomic DNA, integrated into a homologous sequence in the bacterial chromosome. In addition, pCG610 contains two copies of the gene encoding the CryIA(c) insecticidal protein of Bacillus thuringiensis subsp. kurstaki HD73. Using drug resistance phenotypes and specific DNA probes, we found that the loss of all three genes arose both in vitro under nonselective conditions and in planta. The resulting segregants are probably formed by recombination between the repeated DNA sequences flanking pCG610 that resulted from the integration event into the chromosome. Eventually, segregants predominated in the bacterial population. The loss of the integrated plasmid from C. xyli subsp. cynodontis revealed a possible approach for decreasing the environmental consequences of recombinant bacteria for agricultural use.     

Putative lipoproteins identified by bioinformatic genome analysis of Leifsonia xyli ssp. xyli, the causative agent of sugarcane ratoon stunting disease

Leifsonia xyli ssp. x yli is the causative agent of ratoon stunting disease, a major cause of economic loss in sugarcane crops. Understanding of the biology of this pathogen has been hampered by its fastidious growth characteristics in vitro . However, the recent release of a genome sequence for this organism has allowed significant novel insights. Further to this, we have performed a bioinformatic analysis of the lipoproteins encoded in the L. xyli genome. These analyses suggest that lipoproteins represent c . 2.0% of the L. xyli predicted proteome. Functional analyses suggest that lipoproteins make an important contribution to the physiology of the pathogen and may influence its ability to cause disease in planta .     

Bacterial phytopathogens and genome science

There are now fourteen completed genomes of bacterial phytopathogens, all of which have been generated in the past six years. These genomes come from a phylogenetically diverse set of organisms, and range in size from 870 kb to more than 6Mb. The publication of these annotated genomes has significantly helped our understanding of bacterial plant disease. These genomes have also provided important information about bacterial evolution. Examples of recently completed genomes include: Pseudomonas syringae pv tomato, which is notable for its large repertoire of effector proteins; Leifsonia xyli subsp. xyli, the first Gram-positive bacterial genome to be sequenced; and Phytoplasma asteris, the small genome that lacks important functions previously thought to be essential in a bacterium.     

Stability of the delta-endotoxin gene from Bacillus thuringiensis subsp. kurstaki in a recombinant strain of Clavibacter xyli subsp. cynodontis.

Deletion of chromosomally inserted gene sequences from Clavibacter xyli subsp. cynodontis, a xylem-inhabiting endophyte, was studied in vitro and in planta. We found that nonreplicating plasmid pCG610, which conferred resistance to kanamycin and tetracycline and contained segments of C. xyli subsp. cynodontis genomic DNA, integrated into a homologous sequence in the bacterial chromosome. In addition, pCG610 contains two copies of the gene encoding the CryIA(c) insecticidal protein of Bacillus thuringiensis subsp. kurstaki HD73. Using drug resistance phenotypes and specific DNA probes, we found that the loss of all three genes arose both in vitro under nonselective conditions and in planta. The resulting segregants are probably formed by recombination between the repeated DNA sequences flanking pCG610 that resulted from the integration event into the chromosome. Eventually, segregants predominated in the bacterial population. The loss of the integrated plasmid from C. xyli subsp. cynodontis revealed a possible approach for decreasing the environmental consequences of recombinant bacteria for agricultural use.