Precise Mapping of the Homothallism Genes HML and HMR in SACCHAROMYCES CEREVISIAE

The HML and HMR loci carry unexpressed copies of MATa and MATα information, and a replica of that information is transposed to MAT during mating-type interchange in Saccharomyces yeasts. A negative control mechanism keeps silent the information located at the HML and HMR loci. We mapped these loci by constructing strains in which these loci are expressed. In these strains, the mating type of the segregants is dependent upon the allele at HML and HMR. This novel approach is independent of their switching function. HML is located on the left arm of chromosome III distal to his4 by about 26.8 centimorgans (cM). HMR maps on the right arm of the same chromosome distal to thr4 by about 39.8 cM and proximal to MAL2 by about 1.0 cM. The results allow the exact placement of these loci and are in accord with the observations made by Harashima and Oshima (1976).     

Hard ticks (Acari,Ixodidae) of Croatia

The present paper is based on original and literature data. In Croatia the first studies on the occurrence of ixodid species were made about 80 years ago. The number of tick species recorded in Croatia considerably increased during the 1950s, 60s, 70s and 80s of the past century. A total of 21 species of hard tick belonging to 5 genera have been recorded in Croatia. Ixodes is the best represented genus, with seven species recorded. Haemaphysalis is represented by six species, followed by Rhipicephalus with four species. Dermacentor and Hyalomma are represented by two species each. The ticks were collected on 47 different host species. Eleven tick species were collected on Bos taurus and Ovis aries, followed by Capra hircus and Equus caballus with 8 species and Canis lupus familiaris with 6 species. On the remaining 42 host species one, two or three tick species were collected. The most widespread tick is Ixodes ricinus which was found on 25 different host species.     

Phylogenetic analysis of the sharpshooter genus Subrasaca Young, 1977 (Hemiptera,Cicadellidae, Cicadellini)

The South American sharpshooter genus Subrasaca comprises 14 species. Some species of this genus are quite common in the Brazilian Atlantic Rainforest. In this paper, a phylogenetic analysis of Subrasaca, based on a matrix of 20 terminal taxa and 72 morphological characters of the head, thorax, and male and female genitalia, is presented. The analysis yielded six equally most parsimonious trees (197 steps, CI = 0.6091, RI = 0.5722, and RC = 0.3486). The results suggest that Subrasaca is a monophyletic taxon, although the genus branch is not robust. The clade showing the highest bootstrap and Bremer scores is formed by species with longitudinal dark brown to black stripes on the forewings (Subrasaca bimaculata, Subrasaca constricta, Subrasaca curvovittata, and Subrasaca flavolineata), followed by Subrasaca atronasa + Subrasaca austera.     

Calculation of the energy confinement time and power threshold for L-H transitions in a tokamak with allowance for the parameters of the transport barrier

The ASTRA-ETL code is used to simulate L-H transition scenarios and calculate the energy confinement time and the threshold power of the L-H transition as functions of the averaged electron density 〈n〉, the averaged magnetic field B, the neutral density n _n , and the neutral temperature T _n , as well as the values of T _Se , T _Si , and n _S at the separatrix. It is shown that the linear dependence of the threshold power of the L-H transition on the averaged electron density, Q _L-H∝〈n〉, is associated with an increase in the viscosity of a poloidally rotating plasma due to charge exchange and is governed exclusively by an increase in the neutral density n _n . When the averaged electron density 〈n〉 is low, the threshold power rises because T _Si and T _Se increase. The accuracy of predictions for the power threshold of the L-H transition can be improved if the scaling of Q _L-H versus 〈n〉 and B is derived by processing experimental data from discharges with close parameter values at the separatrix. The hysteresis effect during an L-H-L transition triggered by varying the input power is modeled. The global energy confinement time τ_E is shown to increase linearly with 〈n〉 in the range 〈n〉<3.6×10¹⁹ m^?3 and to saturate at higher electron densities; this behavior is found to be characteristic of the Ohmic, L-, and H-modes. The saturation is associated with the fact that losses via the ion channel (when the transport coefficients are density-independent) dominate over losses via the electron channel. The dependence of τ _E on the input power is determined from the calculated database and is found to be τ _E =0.12Q _L-H ^?0.46 at a fixed averaged electron density 〈n〉. In the simulations of the L-H transition, the energy confinement time τ _E increases by a factor of 2 only if the thermal diffusivity inside the transport barrier is lower than that in the central plasma by a factor of more than 6.     

The rate of allelism of lethal genes in a geographically structured population

The expected rate of allelism, E[I(x)], of lethal genes between two colonies with distance x in a structured population is studied by using one- and two-dimensional stepping-stone models. It is shown that E[I(x)] depends on the magnitude of selection in heterozygous condition (h), the rate of migration among adjacent colonies (m), the number of loci which produce lethal mutations (n) and the effective population size of each colony (N).——E[I(x)] always decreases with distance x. The rate of decrease is affected strongly by the magnitude of m. The rate of decrease is faster when m is small. E[I(x)] also decreases with increasing N and n. The effect of h on E[I(x)] is somewhat complicated. However, E[I(0)] is always smaller when h is small than when it is large.——For large x, the following approximate formulae may be obtained: (see PDF) where q and Var (q) are the mean and the variance of gene frequencies in each colony, t is approximated as t=h, (see PDF), -h for the partially recessive, completely recessive, and overdominant lethals, respectively, and C₀ is a function of m and t. It is clear that E[I(x)] declines exponentially with x in a one-dimensional habitat. The decrease E[I(x)] is faster in a two-dimensional habitat than in a one-dimensional habitat. The present result is applied to some of the existing data and the estimation of population parameters is also discussed.     

Analysis of the Bacillus subtilis recO gene: RecO forms part of the RecFLOR function

The deduced protein product of the Bacillus subtilis gene yqfI, which is 255 residues long, shares homology (25% identity) with the Escherichia coli RecO protein. A null allele of yqfI, when present in an otherwise Rec⁺ B. subtilis strain, causes cells to become highly sensitive to DNA-damaging agents, and plasmid transformation (intramolecular recombination) is reduced by 25-fold while chromosomal transformation (intermolecular recombination) is only moderately affected (2.5-fold reduction). Therefore, the yqfI gene was renamed recO and its null allele is referred to as recO1. The recO1 mutation was introduced into recombination-deficient strains representative of the epistatic groups α (recF, recR and recL strains), β (addA5 addB72), γ (recH342) and ? (recU40). The recO mutation did not affect the sensitivity of recF, recR or recL cells to DNA-damaging agents, increased the sensitivity of recU and addAB cells and abolished the DNA repair capacity of recH cells. The recO mutation did not affect intermolecular recombination in recF, recL, recH or recU cells, but reduced (by about 9-fold) the incidence of intermolecular recombination in addAB cells. The recO mutation did not affect intramolecular recombination in the addAB, recU, recF or recL cells, but reduced it by about 75-fold in recH cells. The defects caused by the recO1 mutation can be partially suppressed by a common suppressor of the recF, recL and recR phenotypes. We therefore assigned recO to epistatic group α and predict that the RecO protein acts at the same stage of recombination as the RecF, RecL and RecR proteins, in a RecFLOR complex.     

A revision and phylogenetic analysis of Stoiba Spaeth?1909 (Coleoptera,Chrysomelidae)

Stoiba Spaeth, 1909 is revised with a phylogenetic analysis of 38 adult morphological characters for nine Stoiba species and 11 outgroup species (Mesomphaliini, Ischyrosonychini, and Hemisphaerotini). Four Cuban species of Stoiba were not sampled. Parsimony analysis located the four most parsimonious trees. The strict consensus (CI=0.59, RI=0.78, Steps=83) resolved the monophyly of Stoiba. The monophyly of Stoiba is supported by pale yellow antennae, antennomere VII broader than its length, and rounded basal line of pronotum. An illustrated key to ten species of Stoiba is provided along with a distribution map of 11 species. Stoiba rufa Blake is synonymized with Stoiba swartzii (Thunberg) by a morphological comparison which includes female genitalia.     

An amber dna mutant of Escherichia coli K12 affecting DNA ligase

We have isolated an amber mutant (dnaL321) of Escherichia coli K12, which affects DNA ligase and which is lethal unless it is suppressed. DNA is degraded under the restrictive conditions. The mutation also affects the sensitivity of the cell to ultraviolet light irradiation, and the capacity to support the growth of phage λ that is deficient in general recombination. This pleiotropy is considered to be due to a single mutation, and is suppressed by supD^?_Isu+ and by supF^?su_III⁺). The mutation is cotransducible with dapE(2%), and with ptsI(85%), by phage Plvir.     

Three Nrt2 genes are differentially regulated in Chlamydomonas reinhardtii

Two new nitrate assimilation-related genes, Nrt2;3 and Nar5, have been identified in Chlamydomonas reinhardtii. The Nrt2;3 gene is a new member of the Nrt2 family, encoding high-affinity nitrate (nitrite) transporters. Like that of the nitrate assimilation genes, expression of the Nrt2;3 gene is down-regulated by ammonium and positively controlled by Nit2, a regulatory locus specific for the pathway. The three Nrt2 genes of C. reinhardtii are differentially regulated by the nitrogen source. Expression of Nrt2;3 and of Nrt2;1, a nitrate/nitrite-bispecific transporter gene, was induced by nitrate and more efficiently by nitrite. Accumulation of mRNA of Nrt2;2, the nitrate-specific transporter gene, was only induced efficiently by nitrate. The Nar5 gene is located upstream of the Nrt2;3 genomic region and expression of its mRNA is down-regulated by ammonium. The Nrt2;3 and Nar5 genes are overexpressed in a deletion mutant that lacks nitrate assimilation loci.     

Kinetics of the ion-sensitive Mg, Ca-adenosinetriphosphatase (ATPase) from Escherichia coli.

The Mg, Ca-ATPase from Escherichia coli is activated by KCl at low concentration and inhibited at high ion concentration. The optimum is at 30 mm KCl. The anion has a major effect, the monovalent cation a minor effect. The activation by Cl^? shows positive cooperativity with a Hill coefficient n_H= 2. The activation is accompanied by a decrease in K_m, leaving V unchanged. Thus the activation is seen especially at low substrate [MgATP] concentration. Trypsin-treated ATPase is also activated by KCl. An allosteric transition by anions is assumed.     

The palynological assemblages from the J–K boundary beds of the Bureya Basin,Russian Far East

Palynological assemblages were studied from the coal-bearing Upper Jurassic (Talanja Formation) to the Lower Cretaceous (Dublikan Formation) deposits of the Bureya Basin, Russia. The palynological assemblages from the upper part of the Talanja Formation are dominated by gymnosperms, mainly Ginkgocycadophytus (up to 40%) and conifers related to Pinaceae (up to 70%). The contribution of non-seed plants is not great, but their diversity is considerable. The miospore assemblages of the Talanja sequence are characterized by the last appearance of the spore taxa Staplinisporites pocockii, Camptotriletes cerebriformis, Camptotriletes nitida, and Cingulatisporites sanguinolentus. The palynological assemblage from the Dublikan Formation is dominated by ferns (up to 84%), represented mainly by Cyathidites and Duplexisporites. Among gymnosperms the role of Classopollis increases (making up about 20%). Another feature is the first appearance of the spore taxa Stereisporites bujargiensis, Neoraistrickia rotundiformis, Contignisporites dorsostriatus, Appendicisporites tricostatus, and Concavissimisporites asper.     

The tipuloid dipterans (Diptera,Tipulidae, Limoniidae) from the Putorana Plateau,with a description of Dactylolabis tschernovi sp. n.

The first data are presented on the tipuloid dipterans from the Putorana Plateau, the Central Siberian Plateau: the crane-flies, Tipula (Arctotipula) oklandi Al., Tipula (Pterelachisus) tundrensis stackelbergiana Lack., Tipula (Vestiplex) arctica Curt., and Tipula (Yamatotipula) lionota Holm.; and the limoniids, Dactylolabis (Dactylolabis) novaezemblae (Al.) and Dactylolabis (Dactylolabis) tschernovi sp. n. A new species, Dactylolabis (D.) tschernovi sp. n., is described from the adult males and females. The male of the new species is very similar to those of Dactylolabis (Dactylolabis) carbonaria Sav. and Dactylolabis (Dactylolabis) satanas Sav. but can be distinguished from the former by the presence of a distinct throat, by the coloration of the head, femora, tibiae, and abdominal segments, as well as by the spear-shaped interbase of the hypopygium; and from the latter species, by the fully developed wings and by the absence of large spines at the base of the interbases.     

Revision of the paraphyletic genus Koerneria Meyl, 1960 and resurrection of two other genera of Diplogastridae (Nematoda)

Recent inferences of phylogeny from molecular characters, as well as a reexamination of morphological and biological characters, reject the monophyly of the nematode genus Koerneria Meyl, 1960 (Diplogastridae). Here, Koerneria sensu lato is revised. The genus, which previously consisted of 40 species, is separated into three genera. Almost all of the transferred species are moved to the resurrected genus Allodiplogaster Paramonov & Sobolev in Skrjabin et al. (1954). Koerneria and Allodiplogaster are distinguished from each other by a weakly vs. clearly striated body surface, an undivided vs. divided stomatal cheilostom, and arrangement of the terminal ventral triplet of male genital papillae, namely in that v5 and v6 are paired and separated from v7 vs. v5–v7 being close to each other. Allodiplogaster is further divided into two groups of species, herein called the henrichae and striata groups, based on both morphological and life-history traits. The henrichae group is characterized by papilliform labial sensilla and male genital papillae, a conical tail in both males and females, and an association with terrestrial habitats and insects, whereas the striata group is characterized by setiform labial sensilla and male genital papillae, an elongated conical tail in both sexes, and an association with aquatic habitats. A second genus, Anchidiplogaster Paramonov, 1952, is resurrected to include a single species that is characterized by its miniscule stoma and teeth, unreflexed testis, and a distinct lack of male genital papillae or stomatal apodemes. Lastly, one further species that was previously included in Koerneria sensu lato is transferred to the genus Pristionchus Kreis, 1932. The revision of Koerneria sensu lato is necessitated by the great variability in its subordinate taxa, which occupy a variety of habitats, in addition to the increased attention to Diplogastridae as a model system for comparative mechanistic biology.     

A method to calculate binding equilibrium concentrations in the allosteric ternary complex model that supports ligand depletion

The allosteric ternary complex model is frequently used in pharmacology to represent the interaction of a receptor R with two ligands A and B. Certain well-known formulas are routinely used to calculate the fractions of the receptor bound at equilibrium with A only, B only, and both A and B. However, it is often omitted that these classical formulas presume that there is no ligand depletion, i.e. that the equilibrium concentrations [A] and [B] of the ligands are well approximated by their total concentrations [A]_T and [B]_T. We present a calculation method which is applicable without this or any restrictions. The equilibrium concentration [R] of the receptor is implicitly characterized by an equation which is solved with a very simple convergent numerical algorithm. The concentrations [A] and [B] are given by explicit formulas in terms of [R]. The required parameters are the equilibrium dissociation constants K_A and K_B, the cooperativity factor α, and the total concentrations [R]_T, [A]_T and [B]_T.     

On the validity of Epeorella Ulmer, 1939 (Ephemeroptera,Heptageniidae) with general considerations on the Heptageniidae of the Sunda Islands

The type material of Epeorella borneonia Ulmer, 1939, the sole species of the genus Epeorella Ulmer, 1939 is reinvestigated and a lectotype (male imago) is designated. Based on several morphological structures, the synonymy with Epeorus Eaton, 1881 (Rhithrogeninae) is rejected. Epeorella stat. prop., known only at the winged stages, belongs to the subfamily Ecdyonurinae, and is a probable endemic of the island of Borneo. The newly erected genus Darthus Webb & McCafferty, 2007, also endemic to Borneo and only known by one species at the nymphal stage, is shown to be a junior subjective synonym of Epeorella. The new combination Epeorella vadora (Webb & McCafferty, 2007) is proposed for the species. The distribution of known heptageniid species from the Sunda Islands is discussed.