Antibacterial compounds from Carissa lanceolata R.Br

The dichloromethane extract of the wood of Carissa lanceolata R.Br. (Apocynaceae) afforded the eudesmanes carissone, dehydrocarissone and carindone. This is the first account of carissone being isolated from the wood of C. lanceolata, and of carindone being isolated from this Carissa species. Dehydrocarissone has not been isolated previously from any Carissa species. The antibacterial activity of these natural products were examined against Staphylococcus aureus, Escherichia coli and Pseudomonas aeruginosa. All three compounds showed activity, with dehydrocarissone and carindone having a minimum inhibitory concentration less than 0.5 mg/ml against S. aureus and E. coli.     

Metabolite production by species of Stemphylium

Morphology and phylogeny have been used to distinguish members of the plant pathogenic fungal genus Stemphylium. A third method for distinguishing species of fungi is by chemotaxonomy. The main goal of the present study was to investigate the chemical potential of Stemphylium via HPLC-UV-MS analysis, while also exploring the potential of chemotaxonomy as a robust identification method for Stemphylium. Several species were found to have species-specific metabolites, while other species were distinguishable by a broader metabolic profile rather than specific metabolites. Many previously described metabolites were found to be important for distinguishing species, while some unknown metabolites were also determined to have important roles in distinguishing species of Stemphylium. This study is the first of its kind to investigate the chemical potential of Stemphylium across the whole genus.     

X-Y chromosome synapsis and recombination in 3 vole species of Asian lineage of the genus Microtus (Rodentia: Arvicolinae)

The pattern of X-Y chromosome pairing in male meiosis is an important taxonomic feature of grey voles of the genus Microtus. Asynaptic sex chromosomes have been found in the majority of species of the Palearctic phylogenetic lineage of this genus, while normal X-Y synapsis has been observed in the species of subgenus Pallasiinus belonging to the Asian phylogenetic lineage. We analyzed sex chromosome pairing and recombination in M. maximowiczii, M. mujanensis and M. fortis which also belong to the Asian phylogenetic lineage (subgenus Alexandromys). Using immunostaining for the proteins of the synaptonemal complex (SCP3) and recombination nodules (MLH1) we demonstrated that X and Y chromosomes of these species paired and recombined in a short subtelomeric region. This indicates that the sex chromosomes of these species retain an ancestral fully functional pseudoautosomal region, which has been lost or rearranged in the asynaptic species of the genus Microtus.     

Mucor: A Janus-faced fungal genus with human health impact and industrial applications

The Mucor genus, a polyphyletic group pertaining to early diverging lineages of fungi, includes a high number of ubiquitous species. Some species have positive or negative impacts on human activities. Indeed, certain pathogenic Mucor species are a threat for animal and human health and identified more frequently as mycosis causative agents, especially in immunocompromised patients. On the contrary, a small number of Mucor species have been used for centuries in food manufacturing for cheese ripening or Asian fermented food production. Some species are also used as biotechnologically important microorganisms due to their high growth rates, dimorphism (for certain species) and their previously unsuspected potential for secondary metabolite production. Despite all these important roles played by Mucor spp., they have been less investigated than ascomycetous or basidiomycetous species and their taxonomy, metabolism and ecology are less documented when compared to their counterparts in the so-called higher fungi. Nevertheless, research focusing most often on the emblematic Mucor circinelloides species has led to increased knowledge on the biology of this genus, and overall on fungal biology. This is particularly documented for fungal dimorphism or light-induced gene regulation. The aim of this review is to give an overview of the current knowledge on Mucor morphology, taxonomy, ecology and genetics and of its importance regarding human health and industrial applications.     

河南省湿地藓属的初步研究

在研究标本的基础上,根据配子体和孢子体的外部形态及其解剖结构和文献中对中国湿地藓属(Hyophila)系统位置的主要观点,鉴定出河南省分布有该属植物6种,其中花状湿地藓(H.nymaniana)、四川湿地藓(H.setschwanica)、匙叶湿地藓(H.spathulata)3种为河南省藓类新记录.编制了河南省湿地藓属植物分种检索表,对每个种的生境、分布及识别特征进行了概述.并对湿地藓属的系统演化位置以及该属植物在河南省的分布进行了讨论.     

A multi-locus phylogeny for Phytophthora utilizing markers derived from complete genome sequences.

Phytophthora species are devastating plant pathogens in both agricultural and natural environments. Due to their significant economic and environmental impact, there has been increasing interest in Phytophthora genetics and genomics, culminating in the recent release of three complete genome sequences (P. ramorum, P. sojae, and P. infestans). In this study, genome and other large sequence databases were used to identify over 225 potential genetic markers for phylogenetic analyses. Here, we present a genus-wide phylogeny for 82 Phytophthora species using seven of the most informative loci (approximately 8700 nucleotide sites). Our results support the division of the genus into 10 well-supported clades. The relationships among these clades were rigorously evaluated using a number of phylogenetic methods. This is the most comprehensive study of Phytophthora relationships to date, and many newly discovered species have been included. A more resolved phylogeny of Phytophthora species will allow for better interpretations of the overall evolutionary history of the genus.     

A multi-locus phylogeny for Phytophthora utilizing markers derived from complete genome sequences

Phytophthora species are devastating plant pathogens in both agricultural and natural environments. Due to their significant economic and environmental impact, there has been increasing interest in Phytophthora genetics and genomics, culminating in the recent release of three complete genome sequences (P. ramorum, P. sojae, and P. infestans). In this study, genome and other large sequence databases were used to identify over 225 potential genetic markers for phylogenetic analyses. Here, we present a genus-wide phylogeny for 82 Phytophthora species using seven of the most informative loci (approximately 8700 nucleotide sites). Our results support the division of the genus into 10 well-supported clades. The relationships among these clades were rigorously evaluated using a number of phylogenetic methods. This is the most comprehensive study of Phytophthora relationships to date, and many newly discovered species have been included. A more resolved phylogeny of Phytophthora species will allow for better interpretations of the overall evolutionary history of the genus.     

Biology and biotechnology of Trichoderma

Fungi of the genus Trichoderma are soilborne, green-spored ascomycetes that can be found all over the world. They have been studied with respect to various characteristics and applications and are known as successful colonizers of their habitats, efficiently fighting their competitors. Once established, they launch their potent degradative machinery for decomposition of the often heterogeneous substrate at hand. Therefore, distribution and phylogeny, defense mechanisms, beneficial as well as deleterious interaction with hosts, enzyme production and secretion, sexual development, and response to environmental conditions such as nutrients and light have been studied in great detail with many species of this genus, thus rendering Trichoderma one of the best studied fungi with the genome of three species currently available. Efficient biocontrol strains of the genus are being developed as promising biological fungicides, and their weaponry for this function also includes secondary metabolites with potential applications as novel antibiotics. The cellulases produced by Trichoderma reesei, the biotechnological workhorse of the genus, are important industrial products, especially with respect to production of second generation biofuels from cellulosic waste. Genetic engineering not only led to significant improvements in industrial processes but also to intriguing insights into the biology of these fungi and is now complemented by the availability of a sexual cycle in T. reesei/Hypocrea jecorina, which significantly facilitates both industrial and basic research. This review aims to give a broad overview on the qualities and versatility of the best studied Trichoderma species and to highlight intriguing findings as well as promising applications.     

Natural compounds with important medical potential found in Helleborus sp.

Helleborus (family Ranunculaceae) are well-known as ornamental plants, but less known for their therapeutic benefits. Over the past few years, Helleborus sp. has become a subject of interest for phytochemistry, pharmacology and other medical research areas. On the basis of their usefulness in traditional medicine, it was assumed that their biochemical profile could be a source of metabolites with the potential to overcome critical medical issues. There are studies involving natural extracts from these species which demonstrate that Helleborus plants are a valuable source of chemical compounds with great medical potential. Some phytochemicals produced by these species have been separated and identified a few decades ago: hellebrin, deglucohellebrin, 20-hydroxyecdysone and protoanemonin. Lately, many other active compounds have been reported and considered as promising remedies for severe diseases such as cancer, ulcer, diabetes and also for common medical problems such as toothache, eczema, low immunity and arthritis. This paper is an overview of the Helleborus genus focusing on some recentlydiscovered compounds and their potential for finding new drugs and useful biochemicals derived from these species.     

Pseudomonas: a promising biocatalyst for the bioconversion of terpenes

The Pseudomonas genus is one of the most diverse and ecologically significant groups of known bacteria, and it includes species that have been isolated worldwide in all types of environments. The bacteria from this genus are characterized by an elevated metabolic versatility, which is due to the presence of a complex enzymatic system. Investigations since the early 1960s have demonstrated their potential as biocatalysts for the production of industrially relevant and value-added flavor compounds from terpenes. Although terpenes are often removed from essential oils as undesirable components, its synthetic oxy-functionalized derivatives have broad applications in flavors/fragrances and pharmaceutical industries. Hence, biotransformation appears to be an effective tool for the structural modification of terpene hydrocarbons and terpenoids to synthesize novel and high-valued compounds. This review highlights the potential of Pseudomonas spp. as biocatalysts for the bioconversion of terpenes and summarizes the presently known bioflavors that are obtained from these processes.     

The sesquiterpenoids and their chemotaxonomic implications in Senecio L. (Asteraceae)

Sesquiterpenoids are important characteristic compounds in Asteraceae plants. These compounds have been proposed to be potential chemotaxonomic markers, but this application has not been comprehensively investigated. In this paper, sesquiterpenoids from 149 species of the genus Senecio were investigated to assess their taxonomic utility. The presence and absence were encoded as binary taxonomic characteristics and subsequently utilised in a clustering analysis. The previously biosynthesis pathway of sesquiterpenoids was taken into account to explore the relationship among these species contained different sesquiterpenoid types. In addition, the DNA phylogeny was also considered to explore the distribution and evolution of sesquiterpenoids in genus Senecio further. As a result, seven chemical major sections within the Senecio were recognised based on the chemical character. Although with several exceptions, the biosynthesis pathway, molecular phylogeny and the geographical origin of these sesquiterpenoid were found to be related to the chemical sections, which largely confirmed the validity of our chemo-classification for genus Senecio. In conclusion, we suggest that the sesquiterpenoid character in Senecio has some value for the genus taxonomy but should be analysed carefully and critically.     

TAXONOMY OF THE LENORMANDIA - LENORMANDIOPSIS COMPLEX (RHODOMELACEAE, RHODOPHYTA)

The genus Lenormandia is composed of nine species from Australia and New Zealand. Some of the these are well known, but others are rare, obscure and ill-defined. We have examined material of all described species and found that they fall into two discrete groups that differ in apex morphology and position of reproductive structures. Plants of the first group, containing the type species L. spectabilis , have a cleft apex and reproductive structures produced directly on the blade surface, whereas those of the second group have a strongly inrolled apex and produce reproductive structures dorsally on small branchlets which arise either from the margins or the midrib. The groups were also found to form discrete clades on analysis of 18S rRNA sequences. All the members of the first group are endemic to Australia, whereas the second group, designated by the new genus name Adamsiella , contains two previously described New Zealand species and a single Australian representative. In addition, two new species are described in this group from New Zealand. Members of the closely related genus Lenormandiopsis were also examined and the type species, L. latifolia , was found to conform in apex morphology and position of reproductive structures to the genus Lenormandia. Accordingly Lenormandiopsis has been subsumed within Lenormandia. The remaining three members of the former genus Lenormandiopsis , however, were found to differ from both the type species and the genus Lenormandia and consequently have been transferred to the separate genus Geraldia , along with a new species from Geraldton, Western Australia which is designated as the type.     

The genus Dietzia: a new home for some known and emerging opportunist pathogens

The genus Dietzia has only been established fairly recently. The Gram morphology and colony appearance of the species of this genus is remarkably similar to Rhodococcus equi . In the absence of simple, accurate methods for their identification, Dietzia spp. might have been misidentified as a Rhodococcus spp. and/or considered to be contaminants only. This MiniReview is designed to summarize current evidence on the clinical significance of Dietzia species, to consider their potential role as human pathogens, and to outline approaches that can be used to accurately classify and identify members of the genus, with the overall aim of alerting the medical microbiological community to a little known genus that contains clinically significant organisms.     

Leptopsyllines from Madagascar (Insecta: Siphonaptera: Ceratophyllidae): description of five new species of Paractenopsyllus Wagner, 1938

Five new species of the malagasy endemic genus Paractenopsyllus Wagner, 1938, are described. Paractenopsyllus rouxi, P. ratovonjatoi, P. duplantieri, P. juliamarinus and P. gemelli have been collected on endemic small mammals and the black rat. Biotopes are mid-elevation rain-forests of the central highlands or the northern mountains of Madagascar. Morphological affinities between these new species and those already known provide taxonomic links within the genus. Differences in the spatial and altitudinal distributions and host ranges allow discussion of the potential factors important in the species distribution of this genus.     

广西报春苣苔属一新种及其系统位置(英文)

报春苣苔是一类生长在石灰岩基质上的多年生草本植物,目前已知的种类160余种,主要分布在我国南部和越南北部的石灰岩地区。该属植物许多种类分布极其狭域,往往仅零星分布在某个或少数几个地点。近年来,该属植物许多新种类不断地被发现和报道,预示着该属植物可能有更加丰富的多样性。该研究报道了在广西博白县发现的该属植物一新种。从形态上判断,该新种属于广义报春苣苔属,其具有的一些特别的形态特征,如花冠下唇比上唇长得多,上唇内部具有两个近圆形斑点(其它多数种类具有条形斑点),而易于与本属其它物种区分。而且,基于叶绿体mat K基因序列重建的系统发育关系表明,该新种的确属于报春苣苔属且广义报春苣苔属是单系类群。该新种与钟冠报春(P.swinglei)和疏花报春(P.laxiflora)最为近缘,其mat K基因与后两者分别有5个和11个碱基差异,暗示这些物种间经历了较长时间的独立演化或mat K基因在这些物种中具有较高的碱基替换速率。另外,该新种只生长在丹霞岩石上,而其近缘种以及同属大多数其它种类都生长在石灰岩基质上,暗示该新种获得了特殊的适应能力以及与其它近缘种间存在生态隔离。该新种以及近年来本属许多其它新种类的发现,进一步增加了对该属植物多样性的认识,以及该属植物的演化与多样性分化之谜。这些物种所具有的高度区域或局域特有性和稀有性,以及形态上的特殊性和遗传上的独立性,进一步强化了对该属植物开展保护的重要性。     

The genus Lactobacillus--a genomic basis for understanding its diversity

The genus Lactobacillus is a diverse group that includes many species used in food production and preservation. Some lactobacilli are considered probiotic, conferring health benefits upon the host. The heterogeneity of this genus poses challenges and opportunities when characterizing or exploiting individual strains. To date, 10 Lactobacillus genome sequences have been published, and at least 11 more sequencing projects are ongoing. These studies will dramatically improve one's understanding of metabolic processes, bioprocessing capabilities and potential roles in health and well-being of the Lactobacilli. This review describes the current status of Lactobacillus genome sequence projects, highlights the major findings and summarizes functional genomics or comparative genomics studies. The genomic basis for the unusual diversity of this genus is discussed, and the potential for comparative genomics to rigorously extend phylogenetic analysis of the Lactobacilli is described.     

Phylogeny, speciation and species turnover. The case of the Mediterranean gastropods of genus Cyclope Risso, 1826

The genus Cyclope Risso, 1826 (family Nassariidae) has appeared in the fossil record since the Pliocene. Although it is still found today, the teleoconch morphology has never undergone modification, despite the fact that the protoconch morphologies of fossils (multispiral) and living forms (paucispiral) are different. They vary in their embryological and larval development and, hence, are two different species: C. migliorinii (Bevilacqua, 1928), the fossil species, and C. neritea (Linnaeus, 1758), the living species. We discuss the morphologic modifications in the evolution of this genus: the speciation that leads to its appearance and the speciation driving the Pliocene species to the living one. The order and the direction of these changes are based on phylogenetic analysis. No intermediate forms have been found showing a gradual morphological change that could have been worked by natural selection. Our analysis takes as the origin of the morphological novelties the genetic modifications in the ontogenetic processes which resulted in rapid and important phenotypic changes. Both speciation processes are sympatric cladogenetic. The changes that determine the appearance of the genus affect only the teleoconch, not the larval development. The modifications that lead from one species to the other, within the genus Cycope, affect the larval development exclusively. This points to a certain disconnection between the development of the embryo-larval phase and the young-adult formation, such that evolutionary processes could have occurred independently in different ontogenetic stages. The influence of larval ecology in relation to extinction of the ancestor and persistence of the derived species is also analysed. We hypothesize that climatic fluctuations may have affected the planktonic larvae of the fossil species, driving it to extinction. The living species, developing without the planktonic phase, would have resisted these climatic changes. We consider that the mechanisms described as drivers of the evolution of this genus can be of more general validity in prosobranch gastropods.