Biotic and abiotic determinants of Batrachochytrium dendrobatidis infections in amphibians of the Brazilian Atlantic Forest

Latitudinal gradients are linked to the dynamics of infectious diseases. Both prevalence and infection intensity of the amphibian-killing fungus, Batrachochytrium dendrobatidis (Bd), vary with latitude. Here, we tested whether abiotic and biotic factors are associated with Bd infection prevalence and intensity along a large latitudinal gradient across the Brazilian Atlantic Forest. We detected a positive association between infection prevalence and infection intensity with latitude; elevation, temperature and precipitation best explained infection prevalence, while temperature best explained infection intensity. We also detected a positive association between species richness and Bd infections and associations between Bd infections with host reproductive biology and habitat type. This represents the longest and most thoroughly sampled latitudinal gradient of Bd in anuran populations. Our results corroborate earlier findings that abiotic factors are a major determinant of Bd infections and highlight the need for a better understanding of the role that species diversity plays in disease outcomes.     

Favolaschia in remnants of the Atlantic Forest,Brazil

The examination of recent collections of Favolaschia from remnants of the Atlantic Forest, Brazil, resulted in the identification of F. aurantiaca, F. cinnabarina and F. luteoaurantiaca sp. nov. Internal transcribed spacer (ITS) sequences obtained from these collections were introduced into the previously published phylogenetic tree of the genus to assess the position of these species within the Favolaschia clade. A maximum likelihood analysis generated a phylogenetic tree with a better resolution, especially for the clade that contains species belonging to section Favolaschia subsection Auriscalpium, where the three specimens collected in Brazil also were clustered in.     

Sharing of termites (Blattodea: Isoptera) between sugarcane matrices and Atlantic Forest fragments in Northeast Brazil

The Atlantic Forest of South America is one of the most degraded tropical forests and the cultivation of sugarcane is considered one of the main causes. In humid forests termites stand out with regard to their abundance and functional importance. The present study aimed to compare termite assemblages of fragments of the Atlantic Forest with that of the sugarcane matrices that surround them. Collections were performed in two sugarcane plantations in Northeast Brazil. In each plantation a fragment of Atlantic Forest and an adjacent sugarcane field were sampled using a standardized termite sampling protocol. A total of 39 species and 302 encounters were recorded. Species richness, relative abundance and composition differed significantly between forests and the matrices, with the presence of exclusive species in each environment—25 in the forests and seven in the matrices. Soil feeding species of the subfamily Apicotermitinae and species of open areas were found in the matrices. There was a marked difference between the assemblages of the matrices, possibly due to soil characteristics. The majority of the species found in the matrices do not cause damage to the crop, but instead act in the processes of soil decomposition and formation, thereby contributing to increased productivity.     

Ecological aspects of mosquitoes (Diptera: Culicidae) in an Atlantic forest area on the north coast of Rio Grande do Sul State,Brazil

Mosquito diversity was determined in an area located on the southern limit of the Atlantic Forest on the north coast of Rio Grande of Sul State. Our major objective was to verify the composition, diversity, and temporal distribution of the mosquito fauna, and the influence of temperature and rainfall. Samplings were performed monthly between December, 2006 and December, 2008, in three biotopes: forest, urban area, and transition area, using CDC light traps and a Nasci vacuum. A total of 2,376 specimens was collected, from which 1,766 (74.32%) were identified as 55 different species belonging to ten genera. Culex lygrus, Aedes serratus, and Aedes nubilus were dominant (eudominant) and constant throughout samplings. The forest environment presented the highest species dominance (D_S=0.20), while the transition area showed the highest values of diversity (H'=2.55) and evenness (J'=0.85). These two environments were the most similar, according to the Morisita‐Horn Index (I_M‐H=0.35). Bootstrap estimates showed that 87.3% of the species occurring in the region were detected. The seasonal pattern showed a greater abundance of mosquitoes between May and October, indicating the period to intensify entomological surveillance in that area.     

Occurrence of fungi in combs of fungus-growing termites (Isoptera: Termitidae, Macrotermitinae)

Fungus-growing termites cultivate their mutualistic basidiomycete Termitomyces species on a substrate called a fungal comb. Here, the Suicide Polymerase Endonuclease Restriction (SuPER) method was adapted for the first time to a fungal study to determine the entire fungal community of fungal combs and to test whether fungi other than the symbiotic cultivar interact with termite hosts. Our molecular analyses show that although active combs are dominated by Termitomyces fungi isolated with direct Polymerase Endonuclease Restriction - Denaturing Gradient Gel Electrophoresis (PCR-DGGE), they can also harbor some filamentous fungi and yeasts only revealed by SuPER PCR-DGGE. This is the first molecular evidence of the presence of non-Termitomyces species in active combs. However, because there is no evidence for a species-specific relationship between these fungi and termites, they are mere transient guests with no specialization in the symbiosis. It is however surprising to notice that termite-associated Xylaria strains were not isolated from active combs even though they are frequently retrieved when nests are abandoned by termites. This finding highlights the implication of fungus-growing termites in the regulation of fungi occurring within the combs and also suggests that they might not have any particular evolutionary-based association with Xylaria species.     

A convolute diversity of the Auriculariales (Agaricomycetes,Basidiomycota) with sphaeropedunculate basidia

Morphological and DNA data show that effused representatives of the Auriculariales (Basidiomycota) with sphaeropedunculate basidia belong to eleven genera of which seven are dealt with in this study. Among them, Myxarium is the largest genus containing 21 accepted species of which nine are reintroduced below and five are described as new. Protodontia is limited to three species only, P. subgelatinosa (the generic type) and two newly described species from Africa. Protoacia is a new monotypic genus for P. delicata, sp. nov., widely distributed on coniferous hosts in Eurasia. Myxariellum is erected for two new species with smooth hymenophore from northwestern North America while Gelacantha is introduced for G. pura, a new species with hydnoid hymenophore from Caucasus. Our data do not confirm the present synonymy of Sebacina sphaerospora with Tremella glaira, and these species are placed in two separate genera – Hydrophana, gen. nov., and Ofella, gen. nov., respectively. A key to European Myxarium and similar‐looking species is included.     

The relationship between productivity and multiple aspects of biodiversity in six grassland communities

Biodiversity is a multifaceted concept but most studies examining the association between the biodiversity of a community and its productivity focus only on species richness. Consequently, studies are needed to examine how other facets of biodiversity vary with productivity if we want to have a better understanding of the distribution of biodiversity across our planet. We evaluated how a number of biodiversity measures (species richness, evenness, dominance, rarity, Simpson’s diversity, and Shannon–Weiner diversity) varied across natural productivity gradients at 6 grassland sites in the continental US. Variation in productivity did not account for a substantial amount of variation in any measure of biodiversity at small spatial scales (≈1 m²) at most sites. When productivity accounted for substantial variation in biodiversity, different measures of biodiversity responded to productivity in different ways. For example, dominance changed in a U-shaped fashion along a productivity gradient whereas richness increased in an asymptotic fashion. Consequently, diversity indices, which account for both species richness and evenness, varied in a hump-shaped fashion along the productivity gradient. Our results highlight that an exclusive focus on the association between species richness and productivity provides an incomplete picture of how a community’s biodiversity is related to its functioning.     

New species and distribution records for Clavulina (Cantharellales,Basidiomycota) from the Guiana Shield,with a key to the lowland neotropical taxa

Three new and one previously described species of Clavulina (Clavulinaceae, Cantharellales, Basidiomycota) are reported from the central Guiana Shield region from tropical rainforests dominated by ectomycorrhizal trees of the leguminous genus Dicymbe (Fabaceae subfam. Caesalpinioideae). We provide morphological, DNA sequence, habitat, and fruiting occurrence data for each species. The new species conform to a generic concept of Clavulina that includes coralloid, branched basidiomata with amphigenous hymenia, basidia with two or 2−4 incurved sterigmata and postpartal septa present or absent, and smooth, hyaline, guttulate basidiospores. Placements of the new species in Clavulina were corroborated with DNA sequence data from the internal transcribed spacer and large subunit of the nuclear ribosomal repeat, and their infrageneric relationships were examined with phylogenetic analyses based on DNA from the region coding for the second largest subunit of DNA-dependent RNA polymerase II (rpb2). To facilitate future studies of the genus in the neotropics, a key is provided for all Clavulina species described from the lowland neotropics.     

Linking scorpion (Arachnida: Scorpiones) assemblage with fragment restoration in the Brazilian Atlantic Forest

Habitat loss due to forest degradation can induce changes in species richness due to variation in species susceptibility to environmental stress. This is particularly important for species with highly specific microhabitats, such as scorpions that inhabit forest habitats. In this study, the richness and abundance of these arachnids were compared between an old-growth (mature) and secondary (65 years under natural restoration) forests. Seasonal influence was also evaluated by comparing diversity between dry and wet seasons. The animals were collected through nocturnal active search using UV lamps and pitfall traps in both areas (old-growth and secondary). Both environments showed similar breast heights of trees, litter depth, litter dry mass, and understory density, indicating a high level of restoration. Scorpion diversity (characterized by Tityus pusillus, T. neglectus, T. brazilae, Bothriurus asper, and Ananteris mauryi) and abundance were not influenced by the different historical usage of both areas. In contrast, the abundance of these arachnids was highly affected by rain regimes, and increased during the dry season. These results suggest that 65 years was a sufficient time period for restoration, making it possible to maintain similar scorpion assemblages in both environments.     

Consistency of growth response to precipitation by Pseudopiptadenia contorta in two Atlantic Forest remnants

Tree growth sensitivity to climate can vary over space and time. This variability generates inconsistency in growth response to climate, which makes it difficult to assess the effects of past climate and global climate change on tree growth. A previous short-term study of Pseudopiptadenia contorta found a consistent growth response to climate in distinct locations, which raises the question, is the growth response of P. contorta to climate consistent over the long-term? We aimed to assess whether there is a common pattern of variation in tree-ring width, build tree-ring width chronologies, and verify the consistency of the climate-growth response of P. contorta in two Atlantic Forest remnants. Wood samples were collected in Reserva Biológica de Poço das Antas (RBPA) and Reserva Biológica de Tinguá (RBT) in the state of Rio de Janeiro, Brazil. Conventional dendrochronology methods were used for cross-dating, to build chronologies and to assess the climate-growth relationship. A common growth pattern was detected for P. contorta, and two tree-ring width chronologies were constructed. A congruent growth response was found for trees of RBPA and RBT to annual and spring precipitation as well as precipitation in the rainy months. Other climate-growth relationships were detected with other precipitation and temperature variables. Considering that P. contorta is a widespread species, occurring in other Brazilian biomes and forest formations, it is a promising model for developing further dendrochronological research including regional networks of replicated site chronologies, which could facilitate the reconstruction of historical climatic series and predictions of future impacts of climate change in tropical areas.     

Inventory,diversity and communities of macrofungi in the Collestrada forest (Umbria,central Italy)

In this study, an inventory of the macrofungi in the Collestrada forest (Umbria, Italy).was performed through the collection of sporocarps of basidiomycetes and ascomycetes over a period of three years. Sampling was performed in selected sites’ representatives of the seven wood types present in the Collestrada forest. A total of 341 species were identified and a comprehensive spatial and seasonal analysis of macrofungal species richness, abundance and diversity was performed. Patterns of fungal fructification varied greatly between species and ecological groups, over the years and seasons. Differences in fungal species composition and abundance were detected between the wood types, however, changes of meteorogical conditions, especially the rainfall level and relative humidity, during the growing seasons and years have a major impact on determining the structure of fungal communities. As 143 of the fungal species identified matched with those included in the Red List (or proposals for Red Lists) in several European countries, the studied sites may represent important areas for conservation of fungal diversity (IFA). The results of this study constitute a powerful tool to optimize conservation strategies and policy.     

Peracarid composition,diversity and species richness in the area of the Northeast Water polynya,East Greenland (Crustacea,Malacostraca)

During the ARK XI-2 expedition with RV Polarstern in September/October 1995, a transect of epibenthic sledge (EBS) samples was taken in the area of the Northeast Water Polynya off the Greenland coast, from the shelf down into the deep sea. A total of 85,304 specimens of Peracarida were collected at seven stations. These individuals comprised 45 families, 103 genera and 180 species. With regard to abundance, Cumacea occurred with highest numbers, 31,269, followed by Isopoda, Amphipoda, Mysidacea and Tanaidacea. Species richness was highest in Amphipoda with 94 species, followed by Isopoda with 43 species, Cumacea with 20 species, Tanaidacea with 15 and Mysidacea with 8 species. Species richness was highest at the shallowest station 37-016 and lowest at the deepest station 37-021, whereas the opposite pattern was found for abundance. Diversity and eveness were highest at the southernmost station and lowest at the deepest station. Amphipoda occurred more frequently at the shallower stations, while Cumacea were very frequent at the deepest station. Numbers of species were lowest for Cumacea at the deepest station, while Amphipoda and Isopoda generally occurred with high species richness at all stations. On the basis of the species composition stations were compared.     

中国小木层孔菌属研究

小木层孔菌属的种类在我国共有7种,其中芳香小木层孔菌Phellinidium fragrans为中国首次报道,该种发现于吉林省长白山自然保护区,与同属其它种的区别是子实体多年生、平伏、具有芳香气味,其担孢子在同属的种类中最小,菌肉中具有形状不规则的厚垣孢子。根据中国的材料对这个种进行了详细描述和显微结构绘图。给出了该属种类的检索表,并将每种孢子统计数据列在检索表中。     

Floristics and environmental factors determining the geographic distribution of epiphytic bromeliads in the Brazilian Atlantic Rain Forest

We investigated how epiphytic species and subfamilies of Bromeliaceae change along the extent of the Atlantic Rain Forest, to answer the questions: (i) How do the epiphytic genera and subfamilies of Bromeliaceae change along the domain? (ii) How similar are the different regions of the Atlantic Rain Forest in relation to the epiphytic species of bromeliads? (iii) Which environmental variables are the most important factors in determining species composition along the domain? We found 114 species of Bromelioideae and 73 of Tillandsioideae. The predominance of Bromelioideae was unexpected, because they are not wind-dispersed as would be expected for most epiphytes. The smaller number of species of Tillandsioideae, and the high frequency of species of Vriesea with limited geographic distributions indicated that epiphytes with rather limited geographic distributions predominate in this domain. Species similarity was divided into one block of south–southeastern localities, and a second block of northeastern–southeastern localities. These results suggest that the distribution of epiphytic bromeliad species resembles that of the phorophyte trees, more than a previous pattern suggested for all epiphytes in the domain. Latitude, temperature and altitude were important factors affecting the species composition along the domain. In general, our results differ from those of other studies in Latin America, and we suggest that historical and evolutionary events generated these differences.     

Effect of fragmentation on the community structure of epixylic bryophytes in Atlantic Forest remnants in the Northeast of Brazil

The effects of fragmentation and edge effects on the floristic composition, richness, diversity and abundance of epixylic bryophytes (growing on decaying wood) were investigated in ten fragments of Atlantic Forest remnants in the Northeast of Brazil. In each fragment, four perpendicular 100 m transects were demarcated. Along these transects, samples of bryophytes growing on decaying wood were collected. The forest fragments were grouped in three size classes (small: <100 ha; medium: 100–500 ha; large: >500 ha). Correlation and multivariate analysis were undertaken between bryophyte flora and fragment metrics (size, form, isolation, altitude variation, nuclear area and secondary vegetation percentage and distance from the edge). A total of 99 species of bryophytes, 52 liverworts and 47 mosses were registered. The statistical results confirming fragment size is an important factor in epixylic community structure. Therefore, composition, richness, diversity and abundance can be better explained by a junction of all studied landscape factors. Bryophyte richness, the percentage of samples with the greatest coverage of decaying wood and shade-tolerant species’ distribution, were not correlated to distance from the forest edge. This suggests that edge effects are not linear or can be detected beyond 100 m from the edge, which is very important for inclusion in future studies.     

Spatial distribution of an undergrowth palm in fragments of the Brazilian Atlantic Forest

The occurrence of disturbed sectors may be as important as microscaleedge effects in tropical forests fragments. We considered the spatialdistribution dynamics of life stages (youngs, immatures, and adults) of theacaulescent, endemic palm Attalea humilis Mart. ex.Spreng.in fire-prone fragments of the Brazilian Atlantic forest to investigatepopulation responses to fragment size and fire occurrence. From 1996 to 1999,werecorded the number of individuals in different life stages in adjacent10×10-m plots in two perpendicular transects across each of threefragments of different sizes (1.6, 6.4, and 9.9 ha) in the ReservaNacional de Poço das Antas, Southeastern Brazil. A fire burnt thefragments studied in 1997. Application of Morisita's Index showed clumping atmost scales, with a marked reduction in clumping degree from youngs to adults,apattern not influenced by fragment size. After fire, clumping degree increasedtemporarily among the youngs. No association between life stages was detectedusing presence/absence data. Palm density concentrated in the most disturbedtransect arms, a pattern very little affected by fragment size or fire. Noconsistent relationship between palm density and distance from fragment edgewasdetected for any stage, fragment, or year. We hypothesize that short-distanceseed dispersal by scatterhoarding rodents results in discrete, low-densityclumps of youngs dissociated from reproductive plants. The spatial pattern oflater stages is probably conditioned by the distribution of canopy gaps in thelargest, more closed fragment. In the other fragments, the presence of largedisturbed sectors promotes the formation of large, continuous stands of palms.This pattern would be reinforced by fire, which is known to be recurrent onalready disturbed sites. For the species studied, large-scale variations in theforest structure (degraded vs. preserved fragment sectors) seems to be moreimportant than microscale edge effects.     

Effects of crowding on life history parameters of four green leafhoppers,Nephotettix spp. (Homoptera: Cicadellidae)

The effects of intraspecific crowding on the different life history parameters of the three tropical and subtropical green leafhoppers, Nephotettix virescensStål ,N. nigropictusDistant and N. malayanusIshihara etKawase , and one temperate species, N. cincticepsUhler , were studied under 25±1°C using the susceptible Japonica rice variety “Nipponbare”. Crowding during the immature stages of the four species prolonged the nymphal developmental period and resulted to smaller adults with reduced fecundity and shorter life span. Similarly, crowding during the adult stage also shortened the life span of both sexes of adults and decreased the fecundity of females of the four species. The effect of crowding during the adult stage was more adverse than the effect of crowding during the immature stages. N. cincticeps seemed more sensitive to crowding even at lower densities whereas the three tropical species were sensitive mostly at higher densities.