Cutting out the middle clam: lucinid endosymbiotic bacteria are also associated with seagrass roots worldwide

Seagrasses and lucinid bivalves inhabit highly reduced sediments with elevated sulphide concentrations. Lucinids house symbiotic bacteria (Ca. Thiodiazotropha) capable of oxidising sediment sulphide, and their presence in sediments has been proposed to promote seagrass growth by decreasing otherwise phytotoxic sulphide levels. However, vast and productive seagrass meadows are present in ecosystems where lucinids do not occur. Hence, we hypothesised that seagrasses themselves host these sulphur-oxidising Ca. Thiodiazotropha that could aid their survival when lucinids are absent. We analysed newly generated and publicly available 16S rRNA gene sequences from seagrass roots and sediments across 14 seagrass species and 10 countries and found that persistent and colonising seagrasses across the world harbour sulphur-oxidising Ca. Thiodiazotropha, regardless of the presence of lucinids. We used fluorescence in situ hybridisation to visually confirm the presence of Ca. Thiodiazotropha on roots of Halophila ovalis, a colonising seagrass species with wide geographical, water depth range, and sedimentary sulphide concentrations. We provide the first evidence that Ca. Thiodiazotropha are commonly present on seagrass roots, providing another mechanism for seagrasses to alleviate sulphide stress globally.Subject terms: Microbial ecology, Plant ecology, Soil microbiology     

Causes of the eelgrass wasting disease: Van der Werff's changing theories

The 1930's wasting disease among the North Atlantic population of eelgrass,Zostera marina, is still an ecological and historical enigma, despite several attractive theories. Van der Werff investigated the die-back of eelgrass in the thirties in the Dutch Wadden Sea, and he considered the micro-organismLabyrinthula as the possible cause of the disease. In 1980, Grevelingen lagoon, harbouring an extensive population ofZostera marina, experienced a major decline of the area covered by the submerged macrophyte. Speculations about the cause of this dramatic decline induced us to think that the wasting disease had struck again. Van der Werff investigated the Grevelingen population and found bothLabyrinthula and a Chaetophoracean endophytic alga to be presumably responsible for the decline. During the quest for the ultimate cause of the wasting disease the question remains whether both micro-organisms are the cause of the disease or simply an effect of decomposition processes triggered by other factors.     

What lies beneath: Why knowledge of belowground biomass dynamics is crucial to effective seagrass management

Conservation of seagrasses meadows is important, because these habitats are ecologically important and under threat. Monitoring and modelling are essential tools for assessing seagrass condition and potential threats, however there are many seagrass indicators to choose from, and differentiating between natural variability and declining conditions poses a serious challenge. Tropical seagrass meadows in the Indo-Pacific, in contrast to most temperate meadows, are characterized by a multi-species composition and a year-round growth. Differences in characteristics between species growing within one meadow could induce uncertainty in the assessment of the dynamics of these meadows if variation in productivity and related biomass turnover timescales are not taken into consideration. We present data on biomass distribution, production and turnover timescales of above- and belowground tissues for three key tropical seagrass species (Thalassia hemprichii, Cymodocea rotundata and Halodule uninervis) in two mixed-species meadows in the Spermonde Archipelago, Indonesia. Seagrass leaf turnover time scales were comparable for the three studied seagrass species and varied between 25 and 30 days. Variation in leaf and rhizome turnover timescales were small (or insignificant) between the two meadows. In contrast, rhizome turnover time scales were around ten times longer than leaf turnover timescales, and large differences in rhizome turnover time scales (200–500 days) were observed between the species. The late-successional species T. hemprichii had much slower rhizome turnover compared to the two early successional species. Furthermore, since rhizome biomass has a much longer turnover time compared to leaf biomass, changes in rhizome biomass reflect effects on seagrass meadows on a much longer timescale compared to changes in leaf biomass for these tropical meadows. We conclude that belowground biomass dynamics are an important proxy to assess long-term effects of environmental stressors on seagrass ecosystems and should be included in tropical seagrass management programmes.     

Extreme temperatures,foundation species,and abrupt ecosystem change: an example from an iconic seagrass ecosystem

Extreme climatic events can trigger abrupt and often lasting change in ecosystems via the reduction or elimination of foundation (i.e., habitat‐forming) species. However, while the frequency/intensity of extreme events is predicted to increase under climate change, the impact of these events on many foundation species and the ecosystems they support remains poorly understood. Here, we use the iconic seagrass meadows of Shark Bay, Western Australia – a relatively pristine subtropical embayment whose dominant, canopy‐forming seagrass, Amphibolis antarctica, is a temperate species growing near its low‐latitude range limit – as a model system to investigate the impacts of extreme temperatures on ecosystems supported by thermally sensitive foundation species in a changing climate. Following an unprecedented marine heat wave in late summer 2010/11, A. antarctica experienced catastrophic (>90%) dieback in several regions of Shark Bay. Animal‐borne video footage taken from the perspective of resident, seagrass‐associated megafauna (sea turtles) revealed severe habitat degradation after the event compared with a decade earlier. This reduction in habitat quality corresponded with a decline in the health status of largely herbivorous green turtles (Chelonia mydas) in the 2 years following the heat wave, providing evidence of long‐term, community‐level impacts of the event. Based on these findings, and similar examples from diverse ecosystems, we argue that a generalized framework for assessing the vulnerability of ecosystems to abrupt change associated with the loss of foundation species is needed to accurately predict ecosystem trajectories in a changing climate. This includes seagrass meadows, which have received relatively little attention in this context. Novel research and monitoring methods, such as the analysis of habitat and environmental data from animal‐borne video and data‐logging systems, can make an important contribution to this framework.     

Antibacterial compounds in estuarine submersed aquatic plants

Estuarine seagrasses often exist in nutrient-rich waters and thus might benefit from mechanisms to control exterior growth of epiphytic microorganisms. In this study, we tested extracts from three estuarine seagrass species, Potamogeton pectinatus L. (sago pondweed), Potamogeton perfoliatus L. (redhead grass) and Ruppia maritima L. (wigeon grass), for antibacterial activity. Methanolic extracts of axenic cultured plants were effective against all gram-positive bacteria tested, inhibiting growth of 12 species in the genera Micrococcus, Staphylococcus, Streptococcus, Bacillus, Aerococcus, Mycobacterium and Corynebacterium. Some gram-negative species in the genera Vibrio, Listonella and Pasteurella were also sensitive. Other gram-negative bacteria were resistant. Antibacterial activity was detected in field-collected plants in spring, but appeared absent in plants collected in fall. These seagrass species thus appear to possess an antibacterial agent. It has not been identified and may consist of one or multiple compounds. The antibacterial agent in P. pectinatus was released into the water column in vitro at concentrations sufficient to inhibit or kill sensitive bacterial species. The agent was stable, with an in vitro half-life of 12 days at 25 °C and 6.6 days at 37 °C. It is possible that antibacterial production has ecological effects upon the bacterial and faunal communities associated with seagrass ecosystems.     

Seagrasses in tropical Australia, productive and abundant for decades decimated overnight

Seagrass ecosystems provide unique coastal habitats critical to the life cycle of many species. Seagrasses are a major store of organic carbon. While seagrasses are globally threatened and in decline, in Cairns Harbour, Queensland, on the tropical east coast of Australia, they have flourished. We assessed seagrass distribution in Cairns Harbour between 1953 and 2012 from historical aerial photographs, Google map satellite images, existing reports and our own surveys of their distribution. Seasonal seagrass physiology was assessed through gross primary production, respiration and photosynthetic characteristics of three seagrass species, Cymodocea serrulata, Thalassia hemprichii and Zostera muelleri. At the higher water temperatures of summer, respiration rates increased in all three species, as did their maximum rates of photosynthesis. All three seagrasses achieved maximum rates of photosynthesis at low tide and when they were exposed. For nearly six decades there was little change in seagrass distribution in Cairns Harbour. This was most likely because the seagrasses were able to achieve sufficient light for growth during intertidal and low tide periods. With historical data of seagrass distribution and measures of species production and respiration, could seagrass survival in a changing climate be predicted? Based on physiology, our results predicted the continued maintenance of the Cairns Harbour seagrasses, although one species was more susceptible to thermal disturbance. However, in 2011 an unforeseen episodic disturbance – Tropical Cyclone Yasi – and associated floods lead to the complete and catastrophic loss of all the seagrasses in Cairns Harbour.     

Long-Term Field Study Reveals Subtle Effects of the Invasive Alga Sargassum muticum upon the Epibiota of Zostera marina

Invasive species can alter coastal ecosystems both directly, e.g. through competition for substratum and nutrients, and indirectly. Indirect effects may be mediated by creation of dissimilar or inimical habitats, changes in predator and/or prey assemblages, alterations in associated biota, and perturbations of water movement and thermal regimes. Previous studies have shown that invasive algae can modify native habitat architecture, disrupt intricately linked food webs and alter epibiotic assemblages. In the UK, the seagrass Zostera marina supports a diverse epibiotic assemblage, influencing key factors such as sediment dynamics, depositional regime and trophic linkages. Increasing encroachment of the invasive alga Sargassum muticum into seagrass meadows changes the physical and chemical characteristics of the local environment and creates the potential for changes in the epibionts associated with the seagrass blades, threatening the integrity of the seagrass ecosystem. We investigated the effects of S. muticum invasion upon the epibiota of Z. marina in a drowned river valley in SW England seasonally from spring to autumn over four years in an in-situ manipulative experiment, comparing permanent quadrats with and without artificially introduced S. muticum. Epibiota were weighed, identified to the most detailed operational taxonomic unit (OTU) possible, and unitary organisms were enumerated. Multivariate PERMANOVA+ analysis revealed significant differences in epibiont assemblages between Sargassum treatments. Linear mixed effects models indicated that differences in epibiota assemblage composition were not reflected as significant differences in mean biomass per sample, or number of epibiont OTUs per sample. We conclude that S. muticum invasion into Z. marina meadows may significantly alter the species composition and abundance distribution of epibiotic assemblages found on the blades of the seagrass. Thus S. muticum invasion could have more wide-reaching effects on processes within coastal ecosystems than predicted purely by direct effects.     

Effects of Posidonia Oceanica Beach-Cast on Germination,Growth and Nutrient Uptake of Coastal Dune Plants

Seagrass meadows play an important role in marine ecosystems. A part of seagrass production is also exported to adjacent coastal terrestrial systems, possibly influencing their functioning. In this work we experimentally analyzed the effect of Posidonia oceanica beach-cast on plant germination, growth, and nutrient uptake of two plant species (Cakile maritima and Elymus farctus) that grow on upper beaches and fore dunes along the Mediterranean coasts. We compared plants growing in simple sand (control) with those growing in a substrate enriched with P. oceanica wrack (treatment) in laboratory. P. oceanica wrack doubled the N substrate pool and kept the substrate humid. Plants growing in the treated substrate grew faster, were twice as large as those growing in the control substrate, while tissues were enriched in N and P (Cakile by the 1.3 fold in N and 2.5 fold in P; Elymus by 1.5 fold in N and 2 fold in P). Our results suggest a positive effect of seagrass litter for the enhancing of dune species, highlighting its role for the conservation of coastal dune ecosystems.     

Environmental variables explaining structural and functional diversity of seagrass macrofauna in an archipelago landscape

Thirteen seagrass beds located over a 80-km range in the brackish waters of SW, Finland, northern Baltic Sea were investigated in order to determine the environmental variables important for univariate community measures and for number, composition and redundancy of functional groups of benthic macrofauna. For species assemblages, fetch and shore angle were the best explanatory variables, followed by sediment granulometry (fine gravel) and then sediment organics. Similarly, fetch, shore angle and Zostera marina shoot density were the best explanatory variables for functional group patterns. Small (< 50 m²) inner-archipelago beds were functionally and structurally equal to the most extensive (500 to > 1000 m²) seagrass beds in the study area. Community measures (density, number of species and diversity) and functional diversity (number of functional groups) equalled or exceeded levels previously recorded in deeper, non-vegetated communities in the northern Baltic Sea. In comparison with marine seagrass assemblages, the total number of species and number of species per function were low. However, species density and derived diversity measures (Shannon-Wieners index H′) equalled or exceeded those reported for other seagrass ecosystems. It is concluded that in terms of seagrass infauna, the Baltic Sea should not be regarded species poor, as is often generally stated, and that conservation initiatives and management strategies should consider both minor as well as more extensive occurrences of seagrasses in coastal waters.     

Seagrass–Sediment Feedback: An Exploration Using a Non-recursive Structural Equation Model

The reciprocal effects between sediment texture and seagrass density are assumed to play an important role in the dynamics and stability of intertidal?Ccoastal ecosystems. However, this feedback relationship has been difficult to study empirically on an ecosystem scale, so that knowledge is mainly based on theoretical models and small-scale (experimental) studies. In this paper we apply a non-recursive structural equation model (SEM) to empirically investigate, at large spatial scale, the mutual dependence between seagrass (Zostera noltii) density and sediment texture, on the pristine, seagrass-dominated, intertidal mudflats of the Banc d??Arguin, Mauritania. The non-recursive SEM allows consistent estimation and testing of a direct feedback between sediment and seagrass whilst statistically controlling for the effects of nutrients and abiotic stress. The resulting model is consistent with the hypothesized negative feedback: grain size decreases with seagrass density, whereas fine grain size has a negative impact on seagrass density because it decreases pore water exchange which leads to hypoxic sediment conditions. Another finding is that seagrass density increases with sediment organic material content up to a threshold level beyond which it levels off. In combination with decreasing grain size, accumulation of organic matter creates hypoxic sediment conditions which lead to the production of toxic hydrogen sulfide which slows down seagrass growth. The negative feedback loop implies that intertidal Z. noltii modifies its own environment, thus controlling its growing conditions. To the best of our knowledge, this study is the first to demonstrate a direct negative feedback relationship in ecosystems by means of a non-recursive SEM.     

The Mangrove Nursery Paradigm Revisited: Otolith Stable Isotopes Support Nursery-to-Reef Movements by Indo-Pacific Fishes

Mangroves and seagrass beds have long been perceived as important nurseries for many fish species. While there is growing evidence from the Western Atlantic that mangrove habitats are intricately connected to coral reefs through ontogenetic fish migrations, there is an ongoing debate of the value of these coastal ecosystems in the Indo-Pacific. The present study used natural tags, viz. otolith stable carbon and oxygen isotopes, to investigate for the first time the degree to which multiple tropical juvenile habitats subsidize coral reef fish populations in the Indo Pacific (Tanzania). Otoliths of three reef fish species (Lethrinus harak, L. lentjan and Lutjanus fulviflamma) were collected in mangrove, seagrass and coral reef habitats and analyzed for stable isotope ratios in the juvenile and adult otolith zones. δ¹³C signatures were significantly depleted in the juvenile compared to the adult zones, indicative of different habitat use through ontogeny. Maximum likelihood analysis identified that 82% of adult reef L. harak had resided in either mangrove (29%) or seagrass (53%) or reef (18%) habitats as juveniles. Of adult L. fulviflamma caught from offshore reefs, 99% had passed through mangroves habitats as juveniles. In contrast, L. lentjan adults originated predominantly from coral reefs (65–72%) as opposed to inshore vegetated habitats (28–35%). This study presents conclusive evidence for a nursery role of Indo-Pacific mangrove habitats for reef fish populations. It shows that intertidal habitats that are only temporarily available can form an important juvenile habitat for some species, and that reef fish populations are often replenished by multiple coastal habitats. Maintaining connectivity between inshore vegetated habitats and coral reefs, and conserving habitat mosaics rather than single nursery habitats, is a major priority for the sustainability of various Indo Pacific fish populations.     

Seagrass Restoration Enhances “Blue Carbon” Sequestration in Coastal Waters

Seagrass meadows are highly productive habitats that provide important ecosystem services in the coastal zone, including carbon and nutrient sequestration. Organic carbon in seagrass sediment, known as “blue carbon,” accumulates from both in situ production and sedimentation of particulate carbon from the water column. Using a large-scale restoration (>1700 ha) in the Virginia coastal bays as a model system, we evaluated the role of seagrass, Zostera marina , restoration in carbon storage in sediments of shallow coastal ecosystems. Sediments of replicate seagrass meadows representing different age treatments (as time since seeding: 0, 4, and 10 years), were analyzed for % carbon, % nitrogen, bulk density, organic matter content, and ²¹⁰Pb for dating at 1-cm increments to a depth of 10 cm. Sediment nutrient and organic content, and carbon accumulation rates were higher in 10-year seagrass meadows relative to 4-year and bare sediment. These differences were consistent with higher shoot density in the older meadow. Carbon accumulation rates determined for the 10-year restored seagrass meadows were 36.68 g C m^-2 yr^-1. Within 12 years of seeding, the restored seagrass meadows are expected to accumulate carbon at a rate that is comparable to measured ranges in natural seagrass meadows. This the first study to provide evidence of the potential of seagrass habitat restoration to enhance carbon sequestration in the coastal zone.     

Genetic diversity of Labyrinthula terrestris, a newly emergent plant pathogen, and the discovery of new Labyrinthulid organisms

Labyrinthuloid organisms are thought almost exclusively to be only associated with marine environments. However in 1995, a disease of turfgrass suddenly appeared that was eventually determined to be caused by a new Labyrinthula species (Labyrinthula terrestris). The disease is primarily thought to be caused by the use of elevated salinity irrigation water, making it a unique example of an emergent plant disease potentially induced by human activity. Our objective was to examine diversity of L. terrestris from broadly distributed isolates using AFLP, sequence analysis of two rDNA loci (SSU & LSU-ITS), and pathogenicity tests since previous research on a limited number of isolates found no variability based in ITS and SSU. In contrast to previous work, 18 unique genotypes were found out of a total of 29 analyzed based on AFLP. Sequence variability was only found in a single pathogenic isolate (Laby 31) that was isolated from the United Kingdom. The divergence based on AFLP and sequence analysis suggests that this isolate is a distinct species but closely related to the other L. terrestris isolates examined. Two putatively new nonpathogenic Labyrinthulid species were also found (Laby 13 & 32). Our results suggest that these organisms may be widely distributed in terrestrial environments based on the diversity found in this study and may have long been associated with terrestrial plants. Our results also suggest that more Labyrinthulid organisms may potentially emerge as new plant pathogens in the future if salinification of agricultural systems continues to increases worldwide.     

Leaf vs. epiphyte nitrogen uptake in a nutrient enriched Mediterranean seagrass (Posidonia oceanica) meadow

In situ nitrogen uptake by leaves and epiphytes was studied in a Mediterranean seagrass (Posidonia oceanica) meadow impacted from a fish farm and a pristine meadow, using ¹⁵NH₄ and ¹⁵NO₃ as tracers. In the impacted meadow both leaves and epiphytes yielded higher N concentrations and showed higher specific N uptake, suggesting a linkage between N uptake and its accumulation. Epiphytes took up N faster than leaves in relation to their corresponding biomass, but when assessed per unit area, N uptake was higher in leaves. Leaf N uptake was negatively correlated with epiphyte N uptake. With increasing epiphyte load on leaves, N leaf uptake decreased while N epiphyte uptake increased, indicating that epiphyte overgrowth hinders N uptake by P. oceanica leaves. Epiphyte contribution to total N uptake increased, while that of leaves decreased at the impacted meadow. However, 2-3 times less N was transferred daily from the water column to the benthic compartment, through seagrass and epiphyte uptake on total, at the impacted meadow. Therefore, it is probably still the loss of the key species - the seagrass - which plays the most important role in N cycling in seagrass ecosystems.     

Differences among major taxa in the extent of ecological knowledge across four major ecosystems

Existing knowledge shapes our understanding of ecosystems and is critical for ecosystem-based management of the world''s natural resources. Typically this knowledge is biased among taxa, with some taxa far better studied than others, but the extent of this bias is poorly known. In conjunction with the publically available World Registry of Marine Species database (WoRMS) and one of the world''s premier electronic scientific literature databases (Web of Science®), a text mining approach is used to examine the distribution of existing ecological knowledge among taxa in coral reef, mangrove, seagrass and kelp bed ecosystems. We found that for each of these ecosystems, most research has been limited to a few groups of organisms. While this bias clearly reflects the perceived importance of some taxa as commercially or ecologically valuable, the relative lack of research of other taxonomic groups highlights the problem that some key taxa and associated ecosystem processes they affect may be poorly understood or completely ignored. The approach outlined here could be applied to any type of ecosystem for analyzing previous research effort and identifying knowledge gaps in order to improve ecosystem-based conservation and management.     

Seascape-scale trophic links for fish on inshore coral reefs

It is increasingly accepted that coastal habitats such as inshore coral reefs do not function in isolation but rather as part of a larger habitat network. In the Caribbean, trophic subsidies from habitats adjacent to coral reefs support the diet of reef fishes, but it is not known whether similar trophic links occur on reefs in the Indo-Pacific. Here, we test whether reef fishes in inshore coral, mangrove, and seagrass habitats are supported by trophic links. We used carbon stable isotopes and mathematical mixing models to determine the minimum proportion of resources from mangrove or seagrass habitats in the diet of five fish species from coral reefs at varying distances (0–2,200 m) from these habitats in Moreton Bay, Queensland, eastern Australia. Of the fish species that are more abundant on reefs near to mangroves, Lutjanus russelli and Acanthopagrus australis showed no minimum use of diet sources from mangrove habitat. Siganus fuscescens utilized a minimum of 25–44 % mangrove sources and this contribution increased with the proximity of reefs to mangroves (R ² = 0.91). Seagrass or reef flat sources contributed a minimum of 14–78 % to the diet of Diagramma labiosum, a species found in higher abundance on reefs near seagrass beds, but variation in diet among reefs was unrelated to seascape structure. Seagrass or reef flat sources also contributed a minimum of 8–55 % to a fish species found only on reefs (Pseudolabrus guentheri), indicating that detrital subsidies from these habitats may subsidize fish diet on reefs. These results suggest that carbon sources from multiple habitats contribute to the functioning of inshore coral reef ecosystems and that trophic connectivity between reefs and mangroves may enhance production of a functionally important herbivore.     

Introduced species in seagrass ecosystems: Status and concerns

A literature review revealed that at least 56 non-native species, primarily invertebrates and seaweeds, have been introduced to seagrass beds, largely through shipping/boating activities and aquaculture. Four seagrass species also have been introduced. The introductions of the seaweeds Caulerpa taxifolia, C. racemosa v. cylindracea, Codium fragile ssp. tomentosoides, Sargassum muticum, the Asian mussel, Musculista senhousia, and the seagrass, Zostera japonica, are the best-known examples in seagrass beds. The ecological effects on seagrasses and associated communities have been examined for slightly less than half of the introduced species, which have predominantly negative effects. There is a paucity of experimental data for ecological effects, particularly for seagrass community structure and function. The exception to this finding is the introduction of the seagrass Z. japonica with oyster aquaculture to native eelgrass beds on the Pacific coasts of Canada and the USA. Recent experiments in several different seagrass ecosystems confirmed that disturbance contributes to the invasibility of seagrass beds. More definitive studies are required to elucidate the relative effects of nutrient pollution and introduced species in causing seagrass decline, particularly where reduced herbivory and boating activity also covary. Seagrass beds often are subject to multiple introduced species, but their cumulative effect has been virtually unstudied. The potential for compounded negative effects merits serious attention. Heightened attention to the issue of introduced species in seagrass beds is called for given the evidence that introduced species can contribute to seagrass decline, to biodiversity changes that could affect seagrass ecosystem functions, and that they can compromise seagrass restoration. Comprehensive surveys in seagrass beds, complemented by more stringent experimental and mensurative sampling designs, are needed. In the interim, conserving seagrass density and bed size can offer resistance to introduced species. Managing to prevent the introductions, including restricting transplantations of non-native biota during seagrass restorations, is likely to bear positive benefits for seagrass ecosystems.     

First experimental evidence of corals feeding on seagrass matter

We present the first experimental evidence of a coral (Oulastrea crispata) ingesting and assimilating seagrass material. Tropical seagrass meadows export a substantial portion of their productivity and can provide an important source of nutrients to neighbouring systems such as coral reefs; however, little is known about the mechanisms of this link. To investigate whether seagrass nutrient uptake via coral heterotrophy is possible, we conducted a feeding experiment with seagrass particulate and dissolved organic matter. Using gut extractions and stable isotope analyses, we determined that O. crispata ingested ¹⁵N-enriched seagrass particles and assimilated the nitrogen into its tissue at a rate of 0.75 μg N cm^?2 h^?1. Corals took up nitrogen from dissolved matter at a comparable rate of 0.98 μg N cm^?2 h^?1. While other ecological connections between seagrass meadows and reef ecosystems are well known, our results suggest a previously unstudied direct nutritional link between seagrasses and corals.