Cryo-Electron Microscopy Three-Dimensional Structure of the Jumbo Phage ΦRSL1 Infecting the Phytopathogen Ralstonia solanacearum

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Highlights? ?RSL1, a jumbo phage, is almost completely covered by decorating proteins ? The tail structure is reported to be 9 Å, revealing unprecedented structural details ? The tail inner tube shows structural similarities to the bacterial type VI secretion system ? The long fibers can stabilize phiRSL1 once it is bound to the host cell surface     

Malaria Parasites Co-opt Human Factor H to Prevent Complement-Mediated Lysis in the Mosquito Midgut

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Highlights? Malaria gametes evade human complement by binding factor H ? The plasmodial protein PfGAP50 binds to factor H on the gamete surface ? Binding of factor H results in inactivation of the complement protein C3b ? Functional inhibition of factor H or PfGAP50 reduces parasite transmission to the mosquito     

Sequence-Specific Transcription Factor NF-Y Displays Histone-like DNA Binding and H2B-like Ubiquitination

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Highlights? 3D structure of NF-Y/CCAAT shows close relationships to core histones H2A/H2B ? NF-YA displays a sequence-specific DNA minor groove-binding module ? Histone H2B and NF-YB share a functional posttranslational modification ? NF-Y binding and monoubiquitination are early events in gene activation     

The n-SET Domain of Set1 Regulates H2B Ubiquitylation-Dependent H3K4 Methylation

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Highlights? H2B ubiquitylation directly stimulates H3K4 methylation by the yeast Set1 complex ? Swd2 is not directly required for the H3K4 methylation activity of the yeast Set1 complex ? The Set1 n-SET domain plays a critical role in H2Bub-dependent H3K4 methylation ? Spp1 is conditionally involved in n-SET- and H2Bub-dependent H3K4 methylation     

LSD2/KDM1B and Its Cofactor NPAC/GLYR1 Endow a Structural and Molecular Model for Regulation of H3K4 Demethylation

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Highlights? Identifying NPAC as a novel LSD2 cofactor stimulating H3K4 demethylation ? Structure determination of LSD2 alone or in complex with NPAC and histone H3 peptide ? Defining the key NPAC residues essential for its intrinsic LSD2 cofactor activity ? Establishing a molecular model for how a cofactor regulates histone demethylation     

Spp1, a Member of the Set1 Complex,Promotes Meiotic DSB Formation in Promoters by Tethering Histone H3K4 Methylation Sites to Chromosome Axes

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Highlights? Spp1 and histone H3K4 residue are important for meiotic DSB formation ? Spp1 physically interacts with the DSB protein Mer2 ? Spp1 in meiosis is not with RNA Pol II, but on chromosome axes in DSB-rich domains ? Spp1’s PHD finger tethers H3K4me3 regions to chromosome axes for DSB formation     

DNA Minor Groove Sensing and Widening by the CCAAT-Binding Complex

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Highlights? CBC binds to the minor groove of the DNA and bends it in a nucleosome-like manner ? Interactions of subunit HapB with DNA explain the sequence specificity of the CBC ? Anchor A of HapB tethers the CBC to the CCAAT box by minor groove widening ? Interactions of the CBC with the histones H3/H4 of the nucleosome are modeled     

N-glycopeptide Signatures of IgA2 in Serum from Patients with Hepatitis B Virus-related Liver Diseases

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Highlights

• •¹⁸O/¹⁶O labeling N-glycopeptide quantification for 40-kDa band in HCC and LC.
• •MRM verification of aberrant N-glycopeptides in healthy-HBV-LC-HCC cascade.
• •TPLTAN²⁰⁵ITK (H5N5S1F1) and (H5N4S2F1) of IgA₂ change in liver diseases.
• •Variation in two N-glycopeptides abundance not caused by protein concentration.

     

Cap-assisted internal initiation of translation of histone H4

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Highlights? Two structural elements of histone H4 mRNA drive translation initiation ? Ribosome is tethered by an eIF4E-binding site located in the coding region ? A RNA three-way helix junction element positions ribosome on the start codon ? The m⁷G cap-binding pocket formed by the mRNA controls histone translation     

Energy and carbon accounting to compare bioenergy crops

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Highlights► Comparing biofuel crops is exceedingly difficult using conventional measurement methods. ► The PETRO approach quantitatively compares biological matter in terms of energy and carbon. ► Tracking carbon flux from air to liquid fuel compares all biofuel crop yields on a common basis. ► Reporting energy yields (GJ ha⁻¹ y⁻¹) and carbon flux (Mg_C ha⁻¹ y⁻¹) enables regional comparison.     

Tangled Up in Knots: Structures of Inactivated Forms of E. coli Class Ia Ribonucleotide Reductase

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Highlights? Two structures of inactivated RNRs show two concatenated α₄β₄ rings in the crystal ? Solution scattering shows rings interlock in the presence of crystallization solution ? Electron microscopy shows open and incomplete states of ring formation ? Mechanism of protein ring concatenation by ring opening and closing is proposed     

Structural basis for substrate targeting and catalysis by fungal polysaccharide monooxygenases

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Highlights? 1.1/1.37 Å polysaccharide monooxygenases structures have active-site dioxygen species ? The structures reveal a large variance in substrate binding surfaces ? Proposed electron transport pathways in polysaccharide monooxygenases are conserved ? Polysaccharide monooxygenases and CBM₃₃ enzymes likely bind substrates differently     

Antiviral Instruction of Bone Marrow Leukocytes during Respiratory Viral Infections

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Highlights? Lung-produced type I interferons instruct bone marrow cells during respiratory virus infections ? IFN-exposed bone marrow leukocytes become resistant to virus infection ? Primed and protected bone marrow leukocytes migrate to the infected lung and contribute to virus clearance     

Short Telomeres in ESCs Lead to Unstable Differentiation

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Highlights? ESCs with short telomeres do not stably differentiate and can resume proliferation ? Critically short telomeres impair Nanog regulation during ESC differentiation ? Short telomeres elicit genome-wide DNA hypomethylation and altered H3K27me3 levels ? Impaired DNA methylation and differentiation are rescued by Dnmt3b or telomere elongation     

ZNF750 is a p63 target gene that induces KLF4 to drive terminal epidermal differentiation

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Highlights? Induction of ZNF750 expression is necessary for terminal epidermal differentiation ? The C2H2 domain of ZNF750 is necessary for its prodifferentiation function ? p63 is necessary for the induction of ZNF750 expression during differentiation ? ZNF750 activates the expression of KLF4 to drive differentiation gene expression     

Crystal Structure of the Yeast Vacuolar ATPase Heterotrimeric EGChead Peripheral Stalk Complex

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Highlights? Two conformations of yeast V-ATPase EGC_head peripheral stalk complex were solved ? The EG heterodimer of the eukaryotic V-ATPase forms a noncanonical coiled coil ? Subunit G contains a conserved random coiled bulge that interrupts the coiled coil ? The EGC_head interaction represents an important target for therapeutic development