The influence of mesh size in environmental quality assessment of estuarine macrobenthic communities

The Water Framework Directive (WFD) strengthened the need for environmental quality assessment with rapid and accurate results. Studies of estuarine benthic macrofauna communities often use 0.5-mm mesh sieves in samples processing. However, this represents a considerable increase in sampling and identification effort compared to the use of 1-mm mesh sieves. Therefore, it is relevant to determine if mesh size matters in environmental quality assessments.The objectives of this study were as follows: (i) to test whether sieves with different mesh sizes provided different environmental status assessments in transitional systems, (ii) to compare the performance of different ecological indicators based on data from 0.5- and 1-mm mesh sieves and (iii) to compare the costs involved in using these two mesh sizes.Data were collected in the fall of 2007 and winter of 2008 at four sampling stations located in the Mondego Estuary, Portugal. The relative performance of Margalef and Shannon–Wiener indices, AMBI—AZTI Marine Biotic Index, Pielou, Eco-Exergy and Specific Eco-Exergy indices was analysed. Additionally, the multimetric Benthic Assessment Tool (BAT) was applied. The samples from the 1-mm mesh sieve were processed 2.9 times faster than the samples from the 0.5-mm mesh sieves. As expected, the density, biomass and number of species retained in the 0.5-mm mesh sieve were significantly higher in both seasons than the density, biomass and number of species retained in the 1-mm mesh sieve. All indicators were significantly different for the two mesh sizes in at least one season. The Pielou index was significantly different for the two mesh sizes in both seasons. Most indices showed that the 0.5-mm mesh sieve captured more information from the study system. The first BAT analysis provided different Ecological Quality Status (EQS) assessments for the two mesh sizes. To use the EQS obtained from the 1-mm mesh sieve as a proxy for the EQS for the 0.5-mm mesh sieve, further modifications were done in terms of reference conditions and class boundary thresholds. Regarding the Mondego Estuary, the use of a 1-mm mesh sieve appeared to be advantageous on routine environmental quality assessment, giving unbiased results with relatively less effort. Nevertheless, the methodology needs further validation and additional tests.     

Spatial heterogeneity recognition in estuarine intertidal benthic macrofaunal communities: influence of sieve mesh-size and sampling depth

Estuarine intertidal soft-bottom macrobenthic infauna of the Tagus estuary was characterised using different mesh size sieves and sediment sampling depth. The study sampled 105 sites using a hand held 0.01 m² corer. The top layer (0–5 cm) was sieved through nested 1.0 and 0.5 mm meshes whereas the bottom layer (5–20 cm) was through a 1 mm mesh. The total survey took 26 taxa of more than 5800 individuals and a total wet weight biomass of over 650 g. The top layer, using both sieves, gathered 23 taxa (92% of the total), more than 5600 specimens (96%) but less than 8 g of biomass (1%) whereas the 1.0 mm sieve retained 21 taxa (91%), more than 1700 specimens (31%) and almost 7 g of biomass (1%). Abundance was dominated by small annelids, of which Streblospio shrubsolii was 68%, whereas biomass was dominated by molluscs, with the bivalve Scrobicularia plana representing 98%. Multivariate analyses showed an abundance pattern where the top layer data was very similar to that obtained with both layers. The bottom layer data were needed to accurately represent the total biomass pattern. The macrofaunal spatial pattern identified with the 0.5 mm sieve data differed from that identified by the 1.0 mm and was essential to discriminate a faunal assemblage located along the upper part of the shore. It was concluded that in order to characterize the macrofauna community structure, based on the presence/absence of taxa, the top layer and a 1.0 mm sieve would be sufficient. An abundance-based characterization requires the top layer and a 0.5 mm sieve whereas a biomass-based characterization requires data for both layers but it is sufficient to use the 1.0 mm sieve. Electronic supplementary material The online version of this article (doi:) contains supplementary material, which is available to authorized users.     

Sieve size effects on root length and biomass measurements of maize (Zea mays) and Grevillea robusta

The purpose of this study was to investigate the effects of different mesh sizes on the recovery of root length and biomass and to determine whether the degree of recovery was influenced by plant species and sample location. Sieves of 2.0, 1.0, 0.5 and 0.25 mm (4.0, 1.0, 0.25 and 0.06 mm2) mesh sizes were used to recover and measure the root length and biomass of Zea mays L. (maize) at 0–15 cm and 30–45 cm depths and of Grevillea robusta A. Cunn. ex R. Br. (grevillea) at the same depths 1.0 m and 4.5 m from a line of grevillea trees. At 0–15 cm, the coarser sieves (sum collected with 2.0 and 1.0 mm sieves) recovered approximately 80% of the total root biomass measured, but only 60% of the root length. The proportion of total maize root length and biomass recovered by the coarser sieves decreased with soil depth. The proportion of total grevillea root length recovered by the coarser sieves was similar at the two soil depths, but increased slightly with distance from the tree line. The ≥ 0.5 mm sieves recovered between 93 and 96% of grevillea and maize root biomass and between 73 and 98% of their root length, depending on the sample location. Roots passing through the 0.5 mm sieve, but recovered by the 0.25 mm sieve were about 20% of total maize root length and grevillea root length at 1.0 m from the tree line but < 5% of the total grevillea root length at 4.5 m from the tree. Roots passing through the 0.5 mm sieve but recovered by the 0.25 mm sieve contributed only slightly to root biomass. Although the ≥ 0.5 mm sieves provided adequate measurements of root biomass, the ≥ 0.25 mm sieves were required for accurate measurement of fine root length. There was no universal correction for root length and biomass underestimation when large sieve sizes were used because the proportions of length and biomass recovered depended on the plant species and on soil depth and distance from the plant. This revised version was published online in August 2006 with corrections to the Cover Date.     

插网网目尺寸及采样时间对潮沟游泳动物采样的影响

在长江河口九段沙盐沼湿地的一条潮沟中,我们比较了两种不同网目尺寸（4mm和8mm）的插网（fyke net）及日夜潮对游泳动物群落采样效率的影响。共捕获鱼类16种5476尾、虾2种4982只。采用方差分析、柯尔莫诺夫-斯米尔诺夫非参数检验法和无度量多维标定分析对两种网目插网的捕获效率,样品的体长分布,群落结构及日夜潮间的差异进行了分析。结果表明,网目尺寸对样品中游泳动物的物种数和鱼类的多度没有影响,但是小网目的插网对虾类有较高的捕获率。两种网目尺寸的插网均在夜潮中捕获较多的鱼类个体,但虾类在日潮捕获较多。在日潮中,网目尺寸对捕获物中五种优势游泳动物的体长分布无显著影响。在夜间,小网目的插网对斑尾复缎虎和脊尾白虾的较大个体具有较高的捕获率,但对较大个体鲅的捕获率不如大网目的插网。样品中游泳动物的群落组成在日夜潮间存在明显差异,大网目捕获物的样本间差异比小网目小。     

基于表型数据的辣椒核心种质构建研究

以收集保存的603份辣椒种质为材料,根据果形指数大小将其分成5组。基于28个性状的表型数据,采用简单比例、平方根比例、对数比例及遗传多样性指数比例法计算各组内取样份数,比较4种组内取样比例法、6种总体取样规模和2种取样方法在构建辣椒核心种质中的作用和效果。结果表明:(1)简单比例、平方根比例、对数比例、遗传多样性指数比例法入选的材料份数占预选核心种质份数依次为24.2%、22.2%、21.1%、17.8%,说明遗传多样性指数比例法对各组取样数量的修正能力最强,使取样更加均衡。(2)当总体取样规模为15%时,遗传多样性指数比例法构建的预选核心种质遗传多样性指数(I)达到最大,表型保留比例(RPR)超过98%;当总体取样规模超过20%时,RPR值、变异系数(CV)和极差符合率(CR)虽然平缓增加,但I值反而减小;说明15%为合适的总体取样规模。(3)利用对数比例法和多样性比例法,在15%的总体取样规模下,聚类取样构建的核心种质I值、RPR值、CV值及CR值均高于随机取样。(4)该研究根据所获得的优化方案最终在表型水平建立了包含91份种质的辣椒核心种质。     

Root length and biomass losses during sample preparation with different screen mesh sizes

Data are presented on the differences in root length density (RLD), dry matter (DM), and root diameter values determined on wheat and faba bean using sieves of different mesh size to separate roots from soil during sample preparation. Screens with 0.2, 1, and 2 mm (0.04, 1, and 4 mm²) aperture were used. Roots collected on the 2-mm sieve represented on average 55% of the weight and only 10% of the total length collected using a 0.2-mm sieve. With a 1-mm sieve 75% of weight was retained, but only 34% of the length. In the 0–20 cm soil layer average RLD and DM values ranged between 1.3 and 2.5 cm cm^-3 and 215 and 136 g m^-2 for faba bean and wheat respectively with 2 mm screens and 14.6 and 18.1 cm cm^-3 and 313 and 202 g m^-2 with 0.2 mm sieves. RLD was more affected than weight since losses from coarse screens were largely due to fine root fractions, although the 1-and 2-mm screens retained a small amount of fine roots that were long or attached to main structures. Variability was higher for measurements on coarser screens. The use of screens much coarser than the diameter of fine roots is not recommended for the study of surface-related phenomena in which root length quantification is necessary, while it may be acceptable for gross comparisons of root weight and spatial extent.     

Granules characteristics in the vertical profile of a full-scale upflow anaerobic sludge blanket reactor treating poultry slaughterhouse wastewater

The performance and the granules characteristics of a 450 m(3) -UASB reactor operating for 1228 days, treating poultry slaughterhouse wastewater with an average COD reduction of 85% was examined. Granules were sampled in three different positions along the vertical central line of the reactor, revealing variations in the concentration of volatile total solids. Although the reactor had been in operation for an extended period of time, granule sizes of 0.5-1.5 mm appeared to predominate. The hollow core was well defined for granules with sizes ranging from 2 to 3 mm in all the sampling ports. The granules exhibited no layered microbial distribution and were packed with different morphotype cells intertwined randomly throughout the cross-section. Methanogenic Archaea predominated in the granules taken from every sampling port along the reactor. The results indicated that the characterization of the granules is a useful tool for the adoption of operational strategies toward optimization of UASB reactors.     

宁夏荒漠草原柠条锦鸡儿枯落物分解特征及其影响因素

以宁夏荒漠草原柠条锦鸡儿(Caragana kornshinskii)枯落物为研究对象,利用网孔分解袋法研究了极小型、小型、中型和大型柠条锦鸡儿灌丛微生境枯落物分解率变化特征及对土壤环境的响应规律。结果表明:(1)随着分解时间延长,不同大小柠条锦鸡儿灌丛微生境土壤含水量和土壤温度均呈现出相似的分布特征,而土壤pH值和电导率随时间分布特征则受到灌丛大小的显著影响。(2)3种网孔内,不同大小柠条灌丛微生境间枯落物分解率均无显著差异性。但是,灌丛微生境中枯落物分解率受到灌丛大小和网孔大小的共同影响。(3)中型灌丛微生境中枯落物分解率在3种网孔间均无显著差异性。但在极小型灌丛微生境中,120 d时枯落物分解率表现为4 mm(40.95%)0.01 mm(38.51%)2 mm(32.14%),150 d时枯落物分解率表现为2 mm(37.64%)4 mm(35.20%)0.01 mm(26.68%)。在小型灌丛微生境中,120 d时枯落物分解率表现为0.01 mm(46.81%)4 mm(41.07%)2 mm(34.75%)。在大型灌丛微生境中,120 d时枯落物分解率表现为4 mm(39.65%)2 mm(36.65%)0.01 mm(35.96%),210 d时枯落物分解率表现为2 mm(48.05%)4 mm(35.96%)0.01 mm(30.80%)。(4)Olson衰减指数模型得出枯落物分解50%和95%所需时间,表现为极小型灌丛和中型灌丛微生境中均为0.95年和4.1年(3种网孔相同);小型灌丛微生境中为0.63年和2.74年(4 mm)、1.90年和8.21年(2 mm)、0.95年和4.1年(0.01 mm);大型灌丛微生境中为0.95年和4.1年(4 mm)、0.63年和2.74年(2 mm)、1.90年和8.21年(0.01 mm)。研究表明,在宁夏荒漠草原,仅灌丛大小引起的微生境差异对枯落物分解率影响较小,但灌丛大小和土壤动物类群的相互作用对枯落物分解率的影响较大。     

Polychaeta (Annelida) associated with Thalassia testudinum in the northeastern coastal waters of Venezuela

Seasonal variations of polychaetes in a Thalassia testudinum bed were studied from June 2000 to April 2001 in Chacopata, northeastern Venezuela. Eight replicate samples were taken monthly with a 15 cm diameter core and the sediment was passed through a 0.5 mm mesh sieve. A total of 1,013 specimens, belonging to 35 species, was collected. The monthly density ranged from 387 ind/m2 (September) to 1,735 ind/m2 in May (x = 989+/-449 ind/m2). Species richness was lowest in August and September (8) and highest (25) in April (x = 18.00+/-5.29). The shoot density of Thalassia showed an average of 284+/-77.60 shoots/m2, with extreme values in February (164) and May (422). Species diversity ranged from 1.25 in August and 3.33 bits/ind in December (x = 2.47+/-0.64). Significant positive correlations were detected among the number of Thalassia shoots, polychaete abundance and species richness, as well as among species richness, polychaete abundance and species diversity. Species number and average density were found within the intervals of mean values reported in similar studies. The higher number of species and organisms obtained in March-April and June-July can be attributed to the recruitment correlated with the regional up-welling.     

Sampling demersal zooplankton: A comparison of field collections using three different emergence traps

Comparisons of demersal zooplankton collected in three structurally different emergence traps indicated that density and diversity estimates are affected by design features and sampling procedures. The smallest mesh netting (63 μm) in the walls of Hobson-Chess traps contained larger catches than traps with 202- or 333-μm mesh. Samples from Porter-Porter traps tethered 1 and 10 cm above the bottom had statistically more zooplankton than all other traps set on the substratum. A consistently greater total number of demersal zooplankton was captured in the Alldredge-King traps when all three trap types sampled at the same time and area. The abundance and rank order of all but the most numerous animals ( = harpacticoid copepods) differed between the traps. Alldredge-King traps caught more of the larger organisms (= polychaetes, cumaceans, and gammaridean amphipods), whereas, the Porter-Porter and Hobson-Chess traps contained larger densities of smaller zooplankton ( = copepod nauplii and gastropod veligers).     

Methodological considerations on the coastal and transitional benthic indicators proposed for the Water Framework Directive

A large data set from the coastal environment of the Mediterranean across benthic enrichment gradients was used to test the performance of various indices as indicators of the seabed environmental conditions. Comparisons involved samples sieved through different mesh sizes, taken in different seasons and taken with different samplers. Most indices were found not to be affected by sieve mesh size, they showed some variations with sampling season and they varied considerably with sampler (sampling size) used, but also they were found to be significantly intercorrelated. Among the indicators tested, the Benthic Quality Index at the family level (BQI-family) was found to be the least sensitive in changes in the sampling configuration; it is highly correlated with all the other indicators and needs less time and taxonomic expertise. Our results indicate that there is a need for standardization of the methodology used during sampling for the Water Framework Directive, since the sampling configuration (and the indicator used) may to a large extend determine the results of the Ecological Status (ES) analysis.     

Effects of sampling teams and estimation methods on the assessment of plant cover

Abstract. We evaluated variability in cover estimation data obtained by (1) two sampling teams who double sampled plots and (2) one team that used two methods (line intercepts and visual estimation of cover classes) to characterize vegetation of herbaceous wetlands. Species richness and cover estimates were similar among teams and among methods, but one sampling team scored cover higher than the other. The line intercept technique yielded higher cover estimates but lower species richness estimates than the cover class method. Cluster analyses of plots revealed that 36% and 11% of plots sampled consecutively by two teams or using two methods, respectively, were similar enough in species composition and abundance to be paired together in the resulting clustering tree. Simplifying cover estimate data to presence/absence increased the similarity among both teams and methods at the plot scale. Teams were very similar in their overall characterization of sites when cover estimation data were used, as assessed by cluster analysis, but methods agreed best on their overall characterization of sites when only presence/absence data were considered. Differences in abundance estimates as well as pseudoturnover contribute to variability. For double sampled plots, pseudoturnover was 19.1%, but 57.7% of pseudo‐turnover cases involved taxa with ≤ 0.5% cover while only 3.4% involved taxa with > 8% cover. We suggest that vegetation scientists incorporate quality control, calibrate observers and publish their results.     

Effects of prey dispersal on predator–prey interactions in streams

1. We studied the effect of mesh size (6 and 3 mm) on interactions between brown trout ( Salmo trutta ) and benthic invertebrates in enclosures placed in a stream in southern Sweden. We also compared how different prey exchange rates affected interactions between trout and invertebrates.
2. Trout had strong impacts on some benthic taxa, and different mesh sizes produced different patterns. Trout affected the abundance of 10 of the 21 taxa examined, six in enclosures with 3 mm mesh and six in enclosures with 6 mm mesh. The abundance of nine of the prey taxa was lower in the presence of trout, only leptocerids were more numerous in the presence of trout.
3. Our measurements of prey immigration/emigration, together with trout diet data, suggest that direct consumption by trout, rather than avoidance behaviour by prey, explains most decreases in prey abundance. There was avoidance behaviour by only two of the twenty-one prey taxa, with trout inducing emigration of the mayflies Baetis rhodani and Paraleptophlebia sp.
4. Trout indirectly increased periphyton biomass in both 3 and 6 mm enclosures. The effect of trout on periphyton was probably due to strong effects of trout on the grazer, Baetis rhodani , Heptagenia sp. and Paralepthoplebia sp.
5. Our results suggest that mesh size, through its effects on exchange rates of prey, may affect interactions between predators and prey in running waters, but that the effects of dispersal and predation on invertebrates are taxon specific.     

鱼类早期资源调查中不同网具采集效率的研究

用网目为0.500和0.776mm的筛绢分别制成长度为1.5、2.0和2.5m的弶网、圆锥网和纺锤形网,采用网箱式、滤过式集苗桶和非滤过式集苗桶3种集苗器,于1998年5-6月在长江九江江段进行了采集仔鱼效果的比较研究。结果显示,弶网采集的数量最少,纺锤形网采集的数量最多。不同长度网具采集的数量没有显著差异,但长度为1.5m的圆锥网所采集仔鱼的规格明显小于长度为2.0和2.5m圆锥网所采集的。用网口面积分别为0.38m~2和0.20m~2的圆锥网组与不同类型集苗器进行比较,所采集仔鱼的数量和规格均没有差异。不同网目网具所采集仔鱼的数量没有显著差异,但网目为0.500mm圆锥网所采集仔鱼的平均规格显著小于网目为0.776mm圆锥网的。综合比较,以网目为0.500mm的纺锤形网的采样误差较小。     

A comparison of bridled and bridle‐less ichthyoplankton nets in a variable flow estuarine environment

The effectiveness of bridled and bridle‐less plankton nets for sampling ichthyoplankton from a fixed structure in a variable flow environment was examined. From 22 June to 19 September 2011, larval and juvenile fishes were collected weekly during night flood tides from the Moon River, an estuarine tidal creek south of Savannah, Georgia, USA. Passive horizontal tows were made from a fishing pier using two ichthyoplankton nets, each with a 1 m diameter hoop and 1 mm mesh. A bridled plankton net was configured with a tow rope attached to a traditional three‐point bridle anchored to the hoop and a closed, 1 L collection jar at the cod end. A bridle‐less net was configured with a tow rope and a float tied to the top of the hoop while a weight was tied to the bottom of the hoop. The cod end of the bridle‐less net had an open collection bucket with 1 mm mesh. Nets were deployed simultaneously in the water column, just below the surface, for three consecutive 30‐min tows. For each sampling date, pair‐wise comparisons of nets were performed on mean values of fish abundance, species richness, species diversity, and species evenness. Mean abundance was the only consistent difference between bridled and bridle‐less nets, with the bridle‐less net having on average 4.870 times more fishes. Species richness (as measured by both number of species and Margalef's species richness index) tended to be greater in the bridle‐less net, but not significantly greater. Species diversity (Shannon‐Wiener diversity index) and species evenness (Pielou's evenness index) were also not significantly different between the two nets.     

Use of the size fractionation of the macrobenthic biomass for the rapid assessment of benthic organic enrichment

A new biomass index for monitoring the impact of marine fish cage farming on the benthic environment was evaluated at seven commercial fish farms in the eastern Mediterranean. At each farm, stations near and further away from the cages were sampled for macrofauna and geochemical variables during July 2001, and March and October 2002. Benthic samples were sequentially sieved through 1.0 and 0.5 mm mesh screens and a biomass fractionation index (BFI) was estimated as follows: biomass having passed through 1.0 mm and retained on 0.5 mm sieve only/total biomass (biomass retained on 1.0 mm + 0.5 mm sieve). BFI was quantitatively assessed and compared with the geochemical faunistic and management practice data. BFI was found to decrease consistently with distance from fish cages and particularly after 10 m from the edge of the cages. At all farms, BFI was found to be significantly correlated with distance, redox potential and organic carbon. Multiple regression analysis showed that BFI incorporates various components of sediment geochemistry (sediment grain size and total organic carbon) as well as distance and feeding rates. Although BFI needs to be further tested in different geographic locations and under different management practices, the results seem to be promising for long-term monitoring programmes since it provides a simple and inexpensive solution for assessing the effects of benthic organic enrichment due to fish farm activities.     

Aquatic insect faunas and communities of a mountain stream in Sapa Highland,northern Vietnam

Aquatic insect communities were investigated from the Muonghoa Stream in the Sapa Highland (highest peak 3,143 m), a subtropical mountain stream in northern Vietnam. Field investigations for quantitative (Surber net 50 cm × 50 cm, mesh size 0.2 mm, riffle and pool/run) and qualitative (hand net, mesh size 1 mm) sampling were conducted at nine sites along the watercourse between 27 November and 2 December 2005. As a result, a total of 216 species (the majority of them undescribed) belonging to 139 genera, 61 families, and nine orders were recognized: 53 Ephemeroptera species (24.5%), nine Odonata species (4.2%), 15 Plecoptera species (6.9%), seven Hemiptera species (3.2%), 35 Coleoptera species (16.2%), one Megaloptera species (0.5%), 29 Diptera species (13.4%), 66 Trichoptera species (30.6%), and one Lepidoptera species (0.5%). Trichoptera, Ephemeroptera, and Coleoptera represented the major aquatic insect groups with regard to taxonomic and individual richness, whereas Hemiptera and Odonata were relatively less diverse and abundant than in studies of other tropical Southeast Asian streams. The dominance, richness, and diversity indices (H′) fell within the following ranges [mean ± standard deviation (SD)]: 0.18–0.76 (0.42 ± 0.19), 4.13–9.19 (7.06 ± 1.45), and 1.61–3.22 (2.67 ± 0.55), respectively. Riffle habitats generally yielded numbers of aquatic insect species and individuals approximately twice that sampled in pool/run habitats. Shredders were relatively larger in proportion within the headwater reach, whereas scrapers and collector-gatherers were more abundant in the middle and lower stream reaches. This functional feeding group composition is characteristic of temperate streams in East Asia. The results of detrended correspondence analysis and Bray–Curtis cluster analysis indicated that aquatic insect compositions at the sampling sites were very reflective of the reach characteristics, which evidence gradual changes with altitude and stream order along the stream watercourse. This is the first comprehensive investigation of aquatic insects in highland Southeast Asian regions.     

Methods to control ectomycorrhizal colonization: effectiveness of chemical and physical barriers

We conducted greenhouse experiments using Douglas-fir (Pseudotsuga menziesii var. glauca) seedlings where chemical methods (fungicides) were used to prevent ectomycorrhizal colonization of single seedlings or physical methods (mesh barriers) were used to prevent formation of mycorrhizal connections between neighboring seedlings. These methods were chosen for their ease of application in the field. We applied the fungicides, Topas (nonspecific) and Senator (ascomycete specific), separately and in combination at different concentrations and application frequencies to seedlings grown in unsterilized forest soils. Additionally, we assessed the ability of hyphae to penetrate mesh barriers of various pore sizes (0.2, 1, 20, and 500 microm) to form mycorrhizas on roots of neighboring seedlings. Ectomycorrhizal colonization was reduced by approximately 55% with the application of Topas at 0.5 g l(-1). Meshes with pore sizes of 0.2 and 1 microm were effective in preventing the formation of mycorrhizas via hyphal growth across the mesh barriers. Hence, meshes in this range of pore sizes could also be used to prevent the formation of common mycorrhizal networks in the field. Depending on the ecological question of interest, Topas or the employment of mesh with pore sizes <1 microm are suitable for restricting mycorrhization in the field.