A multi-faceted framework of diversity for prioritizing the conservation of fish assemblages

Floodplain waterbodies and their biodiversity are increasingly threatened by human activities. Given the limited resources available to protect them, methods to identify the most valuable areas for biodiversity conservation are urgently needed. In this study, we used freshwater fish assemblages in floodplain waterbodies to propose an innovative method for selecting priority areas based on four aspects of their diversity: taxonomic (i.e. according to species classification), functional (i.e. relationship between species and ecosystem processes), natural heritage (i.e. species threat level), and socio-economic (i.e. species interest to anglers and fishermen) diversity. To quantitatively evaluate those aspects, we selected nine indices derived either from metrics computed at the species level and then combined for each assemblage (species rarity, origin, biodiversity conservation concern, functional uniqueness, functional originality, fishing interest), or from metrics directly computed at the assemblage level (species richness, assemblage rarity, diversity of biological traits). Each of these indices belongs to one of the four aspects of diversity. A synthetic index defined as the sum of the standardized aspects of diversity was used to assess the multi-faceted diversity of fish assemblages. We also investigated whether the two main environmental gradients at the catchment (distance from the sea) and at the floodplain (lateral connectivity of the waterbodies) scales influenced the diversity of fish assemblages, and consequently their potential conservation value. Finally, we propose that the floodplain waterbodies that should be conserved as a priority are those located in the downstream part of the catchment and which have a substantial lateral connectivity with the main channel.     

Prioritization of fish assemblages with a view to conservation and restoration on a large scale European basin,the Loire (France)

The hierarchical organization of important sites for the conservation or the restoration of fish communities is a great challenge for managers, especially because of financial or time constraints. In this perspective, we developed a methodology, which is easy to implement in different locations. Based on the fish assemblage characteristics of the Loire basin (France), we created a synthetic conservation value index including the rarity, the conservation status and the species origin. The relationship between this new synthetic index and the Fish-Based Index allowed us to establish a classification protocol of the sites along the Loire including fish assemblages to be restored or conserved. Sites presenting disturbed fish assemblages, a low rarity index, few threatened species, and a high proportion of non-native species were considered as important for the restoration of fish biodiversity. These sites were found mainly in areas where the assemblages are typical of the bream zone, e.g. with a higher number of eurytopic and limnophilic species. On the contrary, important sites for conservation were defined as having an important conservation potential (high RI, a lot of threatened species, and few non-natives fish species) and an undisturbed fish assemblage similar to the expected community if habitats are undisturbed. Important sites for conservation were found in the Loire basin’s medium reaches which host assemblages typical for the grayling and the barbell zones, e.g. with a higher number of rheophilic species. The synthetic conservation value index could be adapted and completed with other criteria according to management priorities and capacities.     

Distribution and community structure of Ostracoda (Crustacea) in shallow waterbodies of southern Kenya

The current study presents the ostracod communities recovered from 26 shallow waterbodies in southern Kenya, combined with an ecological assessment of habitat characteristics. A total of 37 waterbodies were sampled in 2001 and 2003, ranging from small ephemeral pools to large permanent lakes along broad gradients in altitude (700–2 800 m) and salinity (37–67 200 µS cm^?1). Between 0 and 12 species were recorded per site. Lack of ostracods was associated with either hypersaline waters, or the presence of fish in fresh waters. Three of the 32 recovered ostracod taxa, Physocypria sp., Sarscypridopsis cf. elizabethae and Oncocypris mulleri, combined a wide distribution with frequent local dominance. Canonical correspondence analysis on species–environment relationships indicated that littoral vegetation, altitude, surface water temperature and pH best explain the variation in ostracod communities. Presence of fish and water depth also influence species occurrence, with the larger species being more common in shallow waterbodies lacking fish. Based on Chao’s estimator of total regional species richness, this survey recovered about two-thirds (60–68%) of the regional ostracod species pool. Scanning electron micrographs (SEM) of the valve morphology of 14 ostracod taxa are provided, in order to facilitate their application in biodiversity and water-quality assessments and in palaeoenvironmental reconstruction.     

中国森林遥感Rao′s Q指数时空演变

明确宏观森林植物多样性时空分布格局,对于评估森林生态工程效果以及有效开展区域生物多样性保护工作具有重要意义。遥感生物多样性研究能够弥补原位观测在时空连续性方面的不足,研究旨在为区域尺度生物多样性研究引入一种新方法——遥感Rao′s Q指数。结果表明：基于归一化植被指数(NDVI)计算的Rao′s Q指数与收集的物种丰富度在空间分布上基本一致,且两者的数值拟合通过极显著检验(R²=0.66,P<0.001),Rao′s Q指数随物种丰富度增加而增加,适用于表征宏观尺度跨气候带地区的森林植物多样性。2000—2017年间,中国森林的Rao′s Q指数时空分布基本一致,整体呈南高北低的态势;不同时段中均以降低为主,降低面积占总面积的44.23%—54.08%,武夷山-南岭一带增高特征凸显,而2010—2017年也表现出降低特征,该区域森林植物多样性本底丰富,应加强管控力度,阻止降低热点区扩散。引入遥感Rao′s Q指数有效表征区域森林植物多样性分布特征,可为区域生态质量评估提供一种新的监测指标,进而为森林植物多样性保护及区域生态质量改善相关政策制定提供支撑。     

A landscape‐based approach for assessing spatiotemporal impacts of forest biomass‐based electricity generation on the age structure of surrounding forest plantations in the Southern United States

Forest plantations support several ecosystem services including biodiversity conservation. Establishment of a forest biomass‐based industry could significantly change the age structure of forest plantations located in its vicinity and thus, could lead to a possible loss of biodiversity. Therefore, this study assesses spatiotemporal impacts of a forest biomass‐based power plant on the age structure of surrounding forest plantations at landscape level. A cellular automata approach was adopted and interactions between economic objectives of forest landowners and a power plant owner punctuated by forest growth and management characteristics were considered. These spatiotemporal impacts were jointly assessed for four separate scenarios and four different power plant capacities using appropriate landscape‐level indices. Slash pine (Pinus elliotti L.) was selected as a representative species. Results indicate that the age structure of surrounding forest plantations continuously fluctuates with respect to each year of power plant operation. However, the age structure, once disturbed, never becomes comparable to the original age structure. We also found that the mature plantations were harvested during early years of power plant operation and were never observed again for the remaining years of power plant operation. This was particularly true for high capacity power plants. Similarly, high value of selected spatial index at the end of power plant life for a high capacity power plant relative to the original low value of the same index indicates aggregation of remaining plantation ages at landscape level. Establishment of low capacity forest biomass‐based power plants and adoption of an integrated regional level planning approach could help in maintaining original age structure characteristics of surrounding forest plantations to a large extent. This might help in sustaining various ecosystem services including biodiversity conservation obtained from forest plantations in a long run.     

Do hotspots fall within protected areas? A Geographic Approach to Planning analysis of regional freshwater biodiversity

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Mammal indicator species for protected areas and managed forests in a landscape conservation area of northern India

There is a realization that managed forests and other natural areas in the landscape matrix can and must make significant contributions to biodiversity conservation. Often, however, there are no consistent baseline vegetation or wildlife data for assessing the status of biodiversity elements across protected and managed areas for conservation planning, nor is there a rapid and efficient means to acquire those data. We used a unified vegetation classification and simple animal sampling design to describe the patterns of abundance of selected mammals as indicator, or characteristic, species in different vegetation types and protected areas vs. managed forest units in the Terai Conservation Area (TCA) in northern Uttar Pradesh state, India. We quantified the relative abundance of 15 mammals of conservation concern from dung counts in vegetation sampling plots within 122 sample patches in 13 vegetation types and 4 management units. Assemblages of species differed both among vegetation types and among management units. Species assemblages in the two protected areas differed strongly from those in two managed forests. Grasslands in protected areas were the most species diverse among vegetation types and had several indicator species. Protected forests were dominated by chital (Axis axis) and nilgai (Boselaphus tragocamelus) in a second species group. A third species group in open grasslands and savannas in managed forests was characterized by cattle (Bos taurus) and Indian hare (Lepus nigricollis). Protected areas clearly are the core conservation area of the TCA for their relatively high habitat value and species diversity, and their protected status minimizes human disturbance. Impacts of human use are high in managed forests, indicating their compromised value for biodiversity conservation. Our simple assessment methodology gives managers a simple way to assess the status of important mammals across landscape conservation units.     

Microchemical provenancing of prey remains in cormorant pellets reveals the use of diverse foraging grounds

Piscivorous birds in aquatic ecosystems exert predation pressure on fish populations. But the site-specific impact on fish populations, including stocked and commercially used fish species, remains disputed. One of the key questions for the management of piscivorous birds and fish is determining the origin of prey and thus which fish populations are targeted by the birds. We addressed this question by provenancing otoliths (earstones) of fish obtained from regurgitated pellets of piscivorous birds by otolith microchemistry analysis. We retrieved otoliths from regurgitated pellets of great cormorants (Phalacrocorax carbo sinensis) collected every 2 weeks for 2 years from breeding and roosting colonies at Chiemsee in Bavaria, Germany, and classified them according to family or species. We collected water samples from Chiemsee and potential surrounding foraging grounds. We measured the strontium (Sr) ⁸⁷Sr/⁸⁶Sr isotope ratio and Sr mass fraction of water and otoliths using (laser ablation) inductively coupled plasma-mass spectrometry. We assigned otoliths from regurgitated pellets to habitat clusters of origin by comparing the Sr isotopic and elemental composition of otoliths and waterbodies. In 36% of cormorant pellets collected at Chiemsee, prey was assigned to waterbodies distinct from Chiemsee. Furthermore, cormorants used different foraging sites during 1 day. Microchemical provenancing of prey remains can contribute to identifying foraging sites of piscivorous birds and to what extend the birds switched among foraging sites.     

基于环境DNA技术的赤水河秋季鱼类多样性分布特征

赤水河是长江上游少有的仍保持自然流态的大型一级支流,是长江鱼类重要的繁衍场和珍稀物种的保护地,摸清其鱼类多样性现状及鱼类群落结构特征对赤水河水生态恢复评估极为重要。于2021年9月对赤水河流域开展了鱼类多样性、分布及其特征调查,全流域共设置52个采样点,采用环境DNA技术采集并研究了赤水河鱼类的组成及其分布。结果显示通过环境DNA方法共调查到鱼类6目18科62属77种,包含16种长江特有鱼类。以鲤形目为主,占总数的87.87%。赤水河鱼类食性以杂食性和肉食性鱼类为主,群落结构上,处于下层水环境鱼类较多;赤水河鱼类优势种为宽鳍鱲(Y=0.205)、西昌华吸鳅(Y=0.085)、麦穗鱼(Y=0.068)、乌苏拟鲿(Y=0.033)、云南光唇鱼(Y=0.027);赤水河上游和下游鱼类群落(P<0.01)和Shannon-Wiener指数差异均显著(P<0.05)。海拔、流速、pH、电导率和温度是影响赤水河鱼类多样性的主要环境因素。为环境DNA技术在赤水河鱼类多样性调查中的应用提供了探索性研究,将有助于赤水河生物多样性的保护。     

Beaver dams maintain fish biodiversity by increasing habitat heterogeneity throughout a low‐gradient stream network

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Water quality of rural ponds in the extensive agricultural landscape of the Cerrado (Brazil)

The Brazilian Cerrado, one of the world’s 34 biodiversity hotspots, is today under increasing pressure from the intensification of agriculture, with the replacement of traditional extensive pastures by arable crops. Manmade ponds are currently widespread in rural areas of the Cerrado and provide many ecosystem services such as cattle watering, fish production, irrigation and erosion protection. As in other parts of the world, ponds are also likely to play a critical role in the conservation of freshwater biodiversity, although in the Cerrado there is still very little known about their biota. Good water quality, in particular the level of eutrophication, is a key factor in maintaining aquatic biodiversity at the regional scale. Therefore, we aimed here to assess the water quality of ponds in the Cerrado. We also assessed whether the main types of socioeconomic pond uses have an impact on their water quality. We focused on measures of primary production and conducted socioeconomic inquiries for 56 waterbodies in the Goiânia Cerrado region (GO, Brazil) at the beginning of the 2012 dry season. Overall, differences in water quality appeared to be linked to the type of pond use. The trophic level, as indicated by the chlorophyll concentration and conductivity, was greater in fish ponds and seemed to be related to management practices such as fish feeding and the type of water supply, in particular relatively low inflow volume. This contrasted with ponds used for cattle watering in extensive agricultural landscapes characterized by a low trophic level potentially beneficial for regional biodiversity. Good water quality in pasture ponds may be maintained by spring water inflow or heavy precipitation. Overall, the water quality of the Cerrado ponds was good compared with the same type of waterbodies in other regions of the world. These results highlight the high potential of the Cerrado ponds in extensive agricultural landscapes to provide an important habitat for aquatic biodiversity. Biodiversity inventories and assessments are now needed to increase our knowledge of these waterbodies and inform management activities at the local and regional scale.     

雷州半岛红树林鱼类群落结构及其与人类活动强度的关系

水产养殖、城镇建设等引起的土地利用变化使红树林生态系统遭受严重破坏,是红树林生物多样性面临的主要威胁之一。了解雷州半岛红树林鱼类群落结构,探究人类活动强度对鱼类群落结构的影响,对红树林鱼类资源保护至关重要。基于2021—2022年雷州半岛7片红树林共21条潮沟的鱼类数据,结合周边土地利用数据,研究鱼类群落结构及其与土地利用类型的关系。结果显示,共采集鉴定鱼类49种,隶属于8目25科,鲈形目鱼类最多,共33种占总种类数的75.5%,其中,虾虎鱼科种数最多,共15种占30.6%;食性上,主要为杂食性和肉食性鱼类,分别为53.06%和44.90%;各红树林Shannon-Wiener多样性指数在秋冬春三季的变化范围均为0—2.5,Simpson多样性指数均为0—0.9;各红树林鱼类个体数、物种数和生物量均存在显著差异(P>0.05);除秋季北潭与流沙湾的鱼类群落无显著差异(P>0.05)外,其余红树林间的鱼类群落在三个季度均有显著差异(P<0.05);人类活动强度、红树林面积和东西岸对鱼类多样性指数、个体数、物种数和生物量均有显著的主效应和交互效应(P<0.05);青...     

Are cladoceran diversity and community structure linked to spatial heterogeneity in urban landscapes and pond environments?

Biodiversity patterns in cladoceran communities were investigated in urban waterbodies in relation with residential land use, pond management, and waterbody environments. We evaluated species richness in the pelagic and littoral zones of eighteen waterbodies of a large Canadian city. Gamma diversity (26 species) observed at a small scale in the urban survey was important comparatively to large-scale surveys of lakes. Beta diversity ranged from 1 to 8 species among waterbodies. We tested if littoral species greatly contributed to regional diversity in urban waterbodies. Littoral species (Chydoridae, Ilyocryptidae, Macrothricidae, Polyphemidae) accounted for 58% of the total species pool. We distinguished five cladoceran assemblages associated to different waterbodies (temporary ponds, permanent lakes, and wetlands). Cladoceran communities were more diverse and variable in permanent lakes than in temporary ponds. Changes in cladoceran species assemblages among waterbodies were driven by variations in waterbody size and phosphorus enrichment, macrophyte and algal biomass, urban density, pond management practices, and the presence of potential predators as fish and macroinvertebrates. Our study indicates that both artificial ponds and lakes and natural wetlands are valuable habitats for the conservation of cladoceran biodiversity and rare endemic species in urban regions. Further research on pond management strategies promoting urban aquatic biodiversity should be undertaken.     

Employing DNA barcoding as taxonomy and conservation tools for fish species censuses at the southeastern Mediterranean,a hot-spot area for biological invasion

This study evaluates the utility of DNA barcoding (mitochondrial cytochrome oxidase subunit I; COI) as a biodiversity and conservation applied tool for identifying fish fauna from the southeastern Mediterranean (the continental coast of Israel), a hot-spot area for biological invasion, also with an eye to establish the foundation for follow-up studies that will use environmental DNA (eDNA) tracks of native and invasive species, and for the application of eDNA concepts and methodologies in nature conservation. We established a dataset of 280 DNA barcodes, representing 110 marine fish species (all identified by a taxonomist), belonging to 75 native and 35 Lessepsian migratory species that were tested within and against the BOLD system database. Most of the query sequences showed 98% matches with reference DNA barcodes in the BOLD system excluding two Trachurus species, three Dasyatis pastinaca and two Rhinobatos rhinobatos individuals. Relatively high intraspecific genetic distances were observed in two Elasmobranchii species (8.83%–18%), suggesting possible cryptic species. In contrast, relatively low interspecific genetic distances were found between two Actinopterygii species (1.54%). Gobiidae family members were observed as being the most scattered on the Bayesian tree. Out of the 110 fish species, 48 were taxonomically discordant with the BOLD BINs (4 at the family level, 15 at the genus level and 29 at the species level), 53 were concordant and 9 were singletons. Discordancy was noted for some Diplodus and Fistularia species during the BOLD BIN analysis. Apogon queketti, Champsodon nudivittis and Cheilodipterus novemstriatus were uploaded to the BOLD system for the first time. We elucidated 177 haplotypes, 122 for the native fish species and 55 for the Lessepsian species. The results will allow the evaluation of invasive species success and will help developing improved policies for the conservation of Mediterranean biodiversity.     

Environmental variables associated with the distribution and occupancy of habitat specialist tadpoles in naturally acidic,oligotrophic waterbodies

Environmental factors play an integral role, either directly or indirectly, in structuring faunal assemblages. Water chemistry, predation, hydroperiod and competition influence tadpole assemblages within waterbodies. We surveyed aquatic predators, habitat refugia, water height and water chemistry variables (pH, salinity and turbidity) at 37 waterbodies over an intensive 22‐day field survey to determine which environmental factors influence the relative abundance and occupancy of two habitat specialist anuran tadpole species in naturally acidic, oligotrophic waterbodies within eastern Australian wallum communities. The majority of tadpoles found were of Litoria olongburensis (wallum sedge frog) and Crinia tinnula (wallum froglet) species, both habitat specialists that are associated with wallum waterbodies and listed as Vulnerable under the IUCN Red List. Tadpoles of two other species (Litoria fallax (eastern sedge frog), and Litoria cooloolensis (cooloola sedge frog)) were recorded from two waterbodies. Tadpoles of Litoria gracilenta (graceful treefrog) were recorded from one waterbody. Relative abundance and occupancy of L. olongburensis tadpoles were associated with pH and water depth. Additionally, L. olongburensis tadpole relative abundance was negatively associated with turbidity. Waterbody occupancy by C. tinnula tadpoles was negatively associated with predatory fish and water depth and positively associated with turbidity. Variables associated with relative abundance of C. tinnula tadpoles were inconclusive and further survey work is required to identify these environmental factors. Our results show that the ecology of specialist and non‐specialist tadpole species associated with ‘unique’ (e.g. wallum) waterbodies is complex and species specific, with specialist species likely dominating unique habitats.     

A novel index to aid in prioritizing habitats for site‐based conservation

Funding biodiversity conservation strategies are usually minimal, thus prioritizing habitats at high risk should be conducted. We developed and tested a conservation priority index (CPI) that ranks habitats to aid in prioritizing them for conservation. We tested the index using 1897 fish species from 273 African inland lakes and 34 countries. In the index, lake surface area, rarity, and their International Union for Conservation of Nature (IUCN) Red List status were incorporated. We retrieved data from the Global Biodiversity Information Facility (GBIF) and IUCN data repositories. Lake Nyasa had the highest species richness (424), followed by Tanganyika (391), Nokoué (246), Victoria (216), and Ahémé (216). However, lakes Otjikoto and Giunas had the highest CPI of 137.2 and 52.1, respectively. Lakes were grouped into high priority (CPI > 0.5; n = 56) and low priority (CPI < 0.5; n = 217). The median surface area between priority classes was significantly different (W = 11,768, p < .05, effect size = 0.65). Prediction accuracy of Random Forest (RF) and eXtreme Gradient Boosting (XGBoost) for priority classes were 0.912 and 0.954, respectively. Both models exhibited lake surface area as the variable with the highest importance. CPI generally increased with a decrease in lake surface area. This was attributed to less ecological substitutability and higher exposure levels of anthropogenic stressors such as pollution to a species in smaller lakes. Also, the highest species richness per unit area was recorded for high‐priority lakes. Thus, smaller habitats or lakes may be prioritized for conservation although larger waterbodies or habitats should not be ignored. The index can be customized to local, regional, and international scales as well as marine and terrestrial habitats.     

Biodiversity: bridging the gap between condition and conservation

The aim of this study is to create a two-tiered assessment combining restoration and conservation, both needed for biodiversity management. The first tier of this approach assesses the condition of a site using a standard bioassessment method, AUSRIVAS, to determine whether significant loss of biodiversity has occurred because of human activity. The second tier assesses the conservation value of sites that were determined to be unimpacted in the first step against a reference database. This ensures maximum complementarity without having to set a priori target areas. Using the reference database, we assign site-specific and comparable coefficients for both restoration (Observed/Expected taxa with >50% probability of occurrence) and conservation values (O/E taxa with <50%, rare taxa). In a trial on 75 sites on rivers around Sydney, NSW, Australia we were able to identify three regions: (1) an area that may need restoration; (2) an area that had a high conservation value and; (3) a region that was identified as having significant biodiversity loss but with high potential to respond to rehabilitation and become a biodiversity hotspot. These examples highlight the use of the new framework as a comprehensive system for biodiversity assessment.     

MASS MORTALITY OF MARINE AND ESTUARINE FISH IN THE SWARTVLEI AND WILDERNESS LAKE SYSTEMS,SOUTHERN CAPE.

Summary

Two incidences of mass mortality of fish were recorded in two saline waterbodies (Swartvlei estuary and Rondevlei) in the Wilderness National Park. Species affected were the Knysna seahorse (Hippocampus capensis) and longsnout pipefish (Syngnathus acus) in the Swartvlei estuary, and Cape stumpnose (Rhabdosargus holubi) and white steenbras (Lithognathus lithognathus) in Rondevlei. Comparison of water quality parameters during fish mortalities to past ranges and reported species tolerances indicated that the probable causes for the mortalities were high water temperature in the Swartvlei estuary, and low dissolved oxygen concentration in Rondevlei.     

Identifying priority sites for the conservation of freshwater fish biodiversity in a Mediterranean basin with a high degree of threatened endemics

The Guadiana River basin’s freshwater fish species richness, endemicity and threatened status (92% of native species are threatened) highlight the need for a large-scale study to identify priority areas for their conservation. One of the most common problems in conservation planning is the assessment of a site’s relative value for the conservation of regional biodiversity. Here we used a two-tiered approach, which integrates an assessment of biodiversity loss and the evaluation of conservation value through site-specific measures. These measures based on the reference condition approach introduce the ability to make objective comparisons throughout the Guadiana River basin, thus avoiding a priori target areas. We identified a set of biodiversity priority areas of special conservation significance—which contain rare taxa as well as intact fish communities—because of their outstanding contribution to the basin’s biodiversity. The inclusion of complete sub-basins in these priority areas might guarantee an optimal solution in terms of spatial aggregation and connectivity. However, the high spatial fragmentation to which the Guadiana River basin is submitted due to river regulation highlights the necessity of a systematic approach to evaluate the capability of the identified priority areas to maintain the Guadiana’s freshwater fish biodiversity. Handling editor: R. H. Norris     

Effects of body mass and water temperature on routine metabolism of American paddlefish Polyodon spathula

This study quantified the effects of temperature and fish mass on routine metabolism of the American paddlefish Polyodon spathula. Thermal sensitivity, as measured by Q₁₀ value, was low in P. spathula. Mean Q₁₀ was 1·78 while poikilotherms are generally expected to have Q₁₀ values in the 2·00–2·50 range. Mass‐specific metabolism did not decrease with increased fish size to the extent that this phenomenon is observed in teleosts, as evidenced by a mass exponent (β) value of 0·92 for P. spathula compared with 0·79 in a review of teleost species. Other Acipenseriformes have exhibited relatively high β values for mass‐specific respiration. Overall P. spathula metabolism appears to be more dependent on body mass and less dependent on temperature than for many other fishes. An equation utilizing temperature and fish mass to estimate gross respiration for P. spathula was derived and this equation was applied to respiratory data from other Acipenseriformes to assess inter‐species variation. Polyodon spathula respiration rates across water temperature and fish mass appear most similar to those of Atlantic sturgeon Acipenser naccarii and white sturgeon Acipenser transmontanus.