New species in <Emphasis Type="Italic">Barleria</Emphasis> sect. <Emphasis Type="Italic">Stellatohirta</Emphasis> (<Emphasis Type="Italic">Acanthaceae</Emphasis>) from Africa

Summary  Three new species are described in Barleria L. sect. Stellatohirta M. Balkwill from tropical Africa: B. aristata from south-central Tanzania, B. aenea from south-western Tanzania and northeast Zambia, and B. purpureotincta from south-western Zambia. Their affinities and conservation status are discussed.     

<Emphasis Type="Italic">Daphnia</Emphasis>species diversity in Kenya,and a key to the identification of their ephippia

The distribution of Daphniaspecies in tropical Africa is poorly known and understood. Daphniaare assumed rare in tropical regions, but systematic studies covering large areas are sparse. We sampled the active community (live zooplankton) and/or the dormant community (diapausing egg banks in the sediment) of 41 standing water bodies in Kenya in search for Daphnia.Overall the dormant communities yielded 11 species of Daphnia, a species richness more than twice the species richness found in the active communities. Dormant community species diversity better reflects the spatial, and particularly the temporal (multi-annual) variation in environmental conditions available to Daphniain these tropical standing waters. Hence, we suggest that the dormant community be taken into account when assessing local zooplankton diversity, especially in fluctuating tropical lake ecosystems, where the presence of each local Daphniaspecies in the active community may be strongly seasonal or erratic. Geographic distribution data from this study are supplemented with previous records of Daphniain East Africa to provide an overview of the known distribution of Daphniain Kenya and neighbouring countries. We also present a detailed key for morphological identification of the ephippia of the 11 Daphniaspecies encountered, complemented with photographs and drawings of diagnostic characters.     

Endophytic bacterial flora in the stem tissue of a tropical maize (<Emphasis Type="Italic">Zea mays</Emphasis> L.) genotype: isolation,identification and enumeration

The genotypic diversity of indigenous bacterial endophytes within stem of tropical maize (Zea mays L.) was determined in field and greenhouse experiments. Strains were isolated from stem tissues of a tropical maize cultivar (PEHM-1) by trituration and surface disinfestation and their population dynamics was determined. Endophytes were found in most of the growing season at populations ranging from 1.36–6.12 × 10⁵ colony-forming units per gram fresh weight (c.f.u./gm fw) of stem. Analysis of these bacterial endophytes using Gas Chromatography—Fatty Acid Methyl Ester (GC-FAME) led to the identification of Bacillus pumilus, B. subtilis, Pseudomonas aeruginosa and P. fluorescens as the relatively more predominant group of bacterial species residing in maize stem. When the maize seedlings grown in a greenhouse were inoculated with these four isolates individually, their population densities decreased (1.6–3.1 × 10⁵ c.f.u./gm fw of stem) as compared to the field-grown maize (1.8–3.8 × 10⁵ c.f.u./gm fw of stem). The highest persistence, however, was recovered in the case of B. subtilis with a population density of 3.1 × 10⁵ c.f.u./gm fw of stem tissue on 28 days after emergence (DAE). This is the first report on population dynamics of bacterial endophytes from tropical maize and the results establish that symptomless populations of bacteria exist in the maize stem.     

“Candidatus Paraholospora nucleivisitans”, an intracellular bacterium in Paramecium sexaurelia shuttles between the cytoplasm and the nucleus of its host

An intracellular bacterium was discovered in two isolates of Paramecium sexaurelia from an aquarium with tropical fish in Münster (Germany) and from a pond in the Wilhelma zoological–botanical garden, Stuttgart (Germany). The bacteria were regularly observed in the cytoplasm of the host, but on some occasions they were found in the macronucleus of the host cell. In these cases, only a few, if any, bacteria were observed remaining in the cytoplasm. The bacterium was not infectious to P. sexaurelia or other species of Paramecium and appeared to be an obligate intracellular bacterium, while bacteria-free host cells were completely viable. The fluorescence in situ hybridisation (FISH) and comparative 16SrDNA sequence analyses showed that the bacterium belonged to a new genus, and was most closely, yet quite distantly, related to Holospora obtusa. In spite of this relationship, the new bacteria differed from Holospora by at least two biological features. Whereas all Holospora species reside exclusively in the nuclei of various species of Paramecium and show a life cycle with a morphologically distinct infectious form, for the new bacterium no infectious form and no life cycle have been observed. For the new bacterium, the name Candidatus Paraholospora nucleivisitans is suggested. The host P. sexaurelia is usually known from tropical and subtropical areas and is not a species typically found in Germany and central Europe. Possibly, it had been taken to Germany with fish or plants from tropical or subtropical waters. Candidatus Paraholospora nucleivisitans may therefore be regarded as an intracellular neobacterium for Germany.     

Occurrence of the putatively heat-tolerant <Emphasis Type="Italic">Symbiodinium</Emphasis> phylotype D in high-latitudinal outlying coral communities

Biogeographic investigations have suggested that coral-symbiont associations can adapt to higher temperatures by hosting a heat-tolerant Symbiodinium, phylotype D. It is hypothesized that phylotype D is absent in high latitudes due to its heat-tolerant characteristics. In this study, this hypothesis was tested by examining the symbiont diversity in a scleractinian coral, Oulastrea crispata, throughout its entire latitudinal distribution range in the West Pacific. Molecular phylotyping of the 5′-end of the nuclear large subunit of ribosomal DNA (lsu rDNA) indicated that phylotype D was the dominant Symbiodinium in O. crispata from the tropical reefs to the marginal non-reefal coral communities. Several colonies of tropical populations were associated with phylotype C, either alone or simultaneously with phylotype D. Analysis of the polymerase chain reaction products using single-strand conformation polymorphism (SSCP) detected relatively low densities of phylotype C in most of the O. crispata colonies surveyed. These results provide evidence for the occurrence of phylotype D in cold-water outlying coral communities. The dominant occurrence of phylotype C in some O. crispata colonies on tropical reefs and the relatively low densities of phylotype C identified by SSCP in subtropical and temperate populations show that the dominant symbiont type can vary in this coral species and that multiple symbionts can co-occur in the same host.     

Changes in biomass and nutrient content of <Emphasis Type="Italic">Nymphoides hydrophylla</Emphasis> (Lour.) O. Kuntz. in a tropical pond: a comparison with other tropical and temperate species

A study was conducted to ascertain monthly changes in biomass of the plant and nutrient content in various organs of Nymphoides hydrophylla grown in a tropical pond during September 1999–August 2000 in relation to environmental factors. Biomass of N. hydrophylla ranged from 25 to 247 g dry weight m⁻². Among the various organs, leaf blade showed highest nitrogen (3.0–4.6%) and phosphorus content (0.9–2.4%). Comparative data of three Nymphoides species showed that N. peltata, the temperate species, had maximum potential of biomass production while long flowering period, year around growth, higher nitrogen content in various organs and presence of other associated flora were unique features of tropical species (N. hydrophylla and N. indica). Both water temperature and water level together appeared to be the best environmental variables that significantly explained the variability in biomass of N. hydrophylla.     

Growth and mortality of bigeye tuna <Emphasis Type="Italic">Thunnus obesus</Emphasis> (Scombridae) in the eastern and central tropical Pacific Ocean

Biological parameters such as age, growth and age (or size) at maturity are vital for stock assessment and management. Aging is essential in yielding such information. However, limited aging studies have been conducted for large tropical pelagic species in the eastern and central tropical Pacific Ocean. The objective of this study is to conduct a length frequency analysis for estimating growth and mortality of bigeye tuna in the eastern and central tropical Pacific Ocean using samples from the Chinese longline fishery during February to November 2006. The von Bertalanffy growth parameters of asymptotic fork length L _∞ and growth coefficient k were estimated at L _∞ = 207.4 cm fork length, k = 0.23 year^-1, and theoretical age at zero length t ₀ = −0.40 year. The total mortality rate (Z) was estimated to be 0.60; the fishing mortality rate (F) and the natural mortality rate (M) were 0.25 year^-1 and 0.35 year^-1, respectively. The exploitation rate (E) was 0.16. This study provides the estimates of growth and mortality rate for bigeye tuna in the eastern and central tropical Pacific Ocean, which can be used as biological input parameters in further stock evaluations in this region. However, age analysis, further validation of the age composition and stock structure are needed for future studies.     

Two new species of <Emphasis Type="Italic">Neosartorya</Emphasis> from Amazonian soil,Brazil

Neosartorya indohii and N. tsurutae, two new Neosartorya species isolated from tropical rainforest soil in the Amazonian area, Brazil, are described and illustrated. Neosartorya indohii is characterized by its spreading growth on Czapeks and malt extract agars, light yellow cleistothecia, broadly lenticular ascospores with two conspicuously serrate-incised equatorial crests and tuberculate convex surfaces, and globose to subglobose conidia with a smooth wall. Neosartorya tsurutae is characterized by its spreading growth on Czapeks and malt extract agars, white cleistothecia, broadly lenticular ascospores with four equatorial crests and rugulose-ruminate convex surfaces, and ovoid to broadly ellipsoidal conidia with a smooth wall.     

Requirement for particular seed-borne fungi for seed germination and seedling growth of <Emphasis Type="Italic">Xyris complanata</Emphasis>, a pioneer monocot in topsoil-lost tropical peatland in Central Kalimantan,Indonesia

Hawaii yellow-eyed grass (Xyris complanata: Xyridaceae) inhabits infertile, acidic peat soil in the rainy tropical zone in Southeast Asia. This monocot plant produces a large number of dormant seeds in order to make a large deposit to seed bank in the soil. Under laboratory conditions, surface-sterilized X. complanata seeds are rarely able to germinate on sterilized peat moss bed; they require inoculation with either seed epiphytic or soil fungi to facilitate active seed germination. In the present study, three different genera of seed epiphytic fungi were isolated, and two common fungal genera, Fusarium sp. (strain R-1) and Penicillium sp. (strain Y-1), were found to promote seed germination of X. complanata. In sterile peat moss beds, the germination-stimulating fungi also showed growth-promoting effects on X. complanata seedlings. These results suggest that the seed germination-promoting fungi likely function as genuine partners for X. complanata in tropical open peat lands.     

Impacts of a Toxic <Emphasis Type="Italic">Microcystis</Emphasis> Bloom on the Macroinvertebrate Fauna of Lake Elphinstone,Central Queensland,Australia

The biological, physical and chemical properties of Lake Elphinstone were studied during a dense, toxic cyanoprokaryote bloom dominated by Microcystis. Decreases in total abundance and richness in macroinvertebrate communities coincided with increases in Microcystis toxicity. Water quality was characterized by high light attenuation values caused by abiogenic turbidity and shading and absorbance from thick algal scums. The study highlights the potential for multidimensional environmental impacts associated with toxic cyanoprokaryote blooms, and the consequent implications for the management of shallow, inland and tropical lakes that are susceptible to toxic blooms.     

A comparison of populations from the Daphnia similis group (Cladocera: Daphniidae)

European populations of Daphnia similis Claus have been compared with populations from tropical Asia. Daphnia similoides n. sp. from tropical Asia was described as the sibling species of D. similis. The female has characteristic neonate, postabdomen, head, and ephippium. The male has characteristic rostrum, antennules, and the distalmost part of the postabdomen. The D. similis group was compared with D. carinata s. str. Australian populations.     

Molecular phylogenetic analyses reveal a close relationship between powdery mildew fungi on some tropical trees and Erysiphe alphitoides, an oak powdery mildew

To investigate the phylogenetic relationships among the powdery mildew fungi of some economically important tropical trees belonging to Oidium subgenus Pseudoidium, we conducted molecular phylogenetic analyses using 30 DNA sequences of the rDNA internal transcribed spacer (ITS) regions and 26 sequences of the domains D1 and D2 of the 28S rDNA obtained from the powdery mildews on Hevea brasiliensis (para rubber tree), Anacardium occidentale (cashew), Bixa orellana, Citrus spp., Mangifera indica (mango), and Acacia spp. The results indicate that the powdery mildew fungi isolated from these tropical trees are closely related to one another. These powdery mildews are also closely related to E. alphitoides (including Erysiphe sp. on Quercus phillyraeoides). Because of the obligate biotrophic nature of the powdery mildew fungi, the relationship between powdery mildews and their host plants is conservative. However, the present study suggests that a particular powdery mildew species has expanded its host ranges on a wide range of the tropical trees. This article also suggests that a powdery mildew fungus distributed in temperate regions of the Northern Hemisphere expanded its host ranges onto tropical plants and may be a good example of how geographical and host range expansion has occurred in the Erysiphales.     

Non-monophyly of the woody bamboos (Bambuseae; Poaceae): a multi-gene region phylogenetic analysis of Bambusoideae s.s.

The taxonomy of Bambusoideae is in a state of flux and phylogenetic studies are required to help resolve systematic issues. Over 60 taxa, representing all subtribes of Bambuseae and related non-bambusoid grasses were sampled. A combined analysis of five plastid DNA regions, trnL intron, trnL-F intergenic spacer, atpB-rbcL intergenic spacer, rps16 intron, and matK, was used to study the phylogenetic relationships among the bamboos in general and the woody bamboos in particular. Within the BEP clade (Bambusoideae s.s., Ehrhartoideae, Pooideae), Pooideae were resolved as sister to Bambusoideae s.s. Tribe Bambuseae, the woody bamboos, as currently recognized were not monophyletic because Olyreae, the herbaceous bamboos, were sister to tropical Bambuseae. Temperate Bambuseae were sister to the group consisting of tropical Bambuseae and Olyreae. Thus, the temperate Bambuseae would be better treated as their own tribe Arundinarieae than as a subgroup of Bambuseae. Within the tropical Bambuseae, neotropical Bambuseae were sister to the palaeotropical and Austral Bambuseae. In addition, Melocanninae were found to be sister to the remaining palaeotropical and Austral Bambuseae. We discuss phylogenetic and morphological patterns of diversification and interpret them in a biogeographic context.     

Connectivity of populations within and between major biogeographic regions of the tropical Pacific in <Emphasis Type="Italic">Conus ebraeus</Emphasis>, a widespread marine gastropod

Information on genetic connectivity and structure of populations in the tropical Pacific is critical for making inferences about the origins and maintenance of diversity in this region. Sequences of the mitochondrial COI gene from 92 individuals of the trans-Pacific gastropod Conus ebraeus from eight localities spanning the tropical Pacific were analyzed to determine whether populations in the western, central, and eastern Pacific exhibit genetic structure, to examine the demographic histories of populations, and to infer patterns of gene flow. A total of 43 unique haplotypes were recovered, including a common haplotype that occurred in six of the eight populations examined. AMOVA and pairwise F-statistics showed that populations in the western and central Pacific were significantly differentiated from populations in the eastern Pacific, but no other evidence of structure. Bayesian isolation–migration (IM) analysis suggested that populations in the western and central Pacific separated from those in eastern Pacific during the Pleistocene. Examination of mismatch distributions and results from IM revealed that populations in the western and central Pacific expanded during the Pleistocene. Gene flow across the East Pacific Barrier appears to occur predominantly westward.     

Optimal conditions of in vitro mycelial growth of <Emphasis Type="Italic">Lentinus strigosus</Emphasis>, an edible mushroom isolated in the Brazilian Amazon

The protocols of in vitro cultivation described in the literature for mushrooms are usually correlated with temperate climate habitat, but it is necessary to study protocols for species of tropical climates. In this article, we collected, isolated, and evaluated the conditions of in vitro mycelial growth of Lentinus strigosus and correlated these with the characteristics of its habitat. These results indicate, as optimal conditions of in vitro mycelial growth for L. strigosus, the use of 35°C for incubation, initial pH from 5 to 7, without illumination, Sabouraud dextrose agar medium, and agitation for culture in liquid medium.     

Sea turtle species vary in their susceptibility to tropical cyclones

Severe climatic events affect all species, but there is little quantitative knowledge of how sympatric species react to such situations. We compared the reproductive seasonality of sea turtles that nest sympatrically with their vulnerability to tropical cyclones (in this study, “tropical cyclone” refers to tropical storms and hurricanes), which are increasing in severity due to changes in global climate. Storm surges significantly decreased reproductive output by lowering the number of nests that hatched and the number of hatchlings that emerged from nests, but the severity of this effect varied by species. Leatherback turtles (Dermochelys coriacea) began nesting earliest and most offspring hatched before the tropical cyclone season arrived, resulting in little negative effect. Loggerhead turtles (Caretta caretta) nested intermediately, and only nests laid late in the season were inundated with seawater during storm surges. Green turtles (Chelonia mydas) nested last, and their entire nesting season occurred during the tropical cyclone season; this resulted in a majority (79%) of green turtle nests incubating in September, when tropical cyclones are most likely to occur. Since this timing overlaps considerably with the tropical cyclone season, the developing eggs and nests are extremely vulnerable to storm surges. Increases in the severity of tropical cyclones may cause green turtle nesting success to worsen in the future. However, published literature suggests that loggerhead turtles are nesting earlier in the season and shortening their nesting seasons in response to increasing sea surface temperatures caused by global climate change. This may cause loggerhead reproductive success to improve in the future because more nests will hatch before the onset of tropical cyclones. Our data clearly indicate that sympatric species using the same resources are affected differently by tropical cyclones due to slight variations in the seasonal timing of nesting, a key life history process.     

The relationship between temperature,competition and the potential for colonization of a subtropical pond by Daphnia magna

The role that temperature plays in excluding large daphnid species from subtropical and tropical ponds, and competitive relationships between Daphnia laevis and Daphnia magna, are explored. D. magna, a large temperate species is probably not excluded from subtropical or tropical systems by elevated temperatures. However, D. magna was a poorer competitor, under a restricted set of laboratory conditions, than D. laevis, the only pond dwelling daphnid in subtropical Florida. Competition is proposed as one mechanism that may limit the number of daphnid species in subtropical and tropical ponds and lakes. Reduced environmental fluctuations in subtropical and tropical systems (compared with temperate systems) may allow zooplankton populations to reach an environmental carrying capacity where competition limits the number of similar, coexisting species in a habitat.     

A transgenic tropical maize line generated by the direct transformation of the embryo-scutellum by <Emphasis Type="Italic">A. tumefaciens</Emphasis>

An efficient Agrobacterium-mediated transformation system, from which transgenic tropical maize plants were directly generated without previous crosses with laboratory or temperate lines, was established. Experimental evaluations were focused on two main issues: (i) establishment of appropriate tissue culture conditions, which induced somatic embryogenesis from the scutellum-cells, and (ii) the delivery of T-DNA toward these cells. High rates of embryogenic-calli, mainly generated from the embryo-scutellum, were obtained when 15 mg l⁻¹ AgNO₃ were included into the N6-based induction medium; rates up to 19 plants per gram were regenerated from these induced calli. Regarding the Agrobacterium strains evaluated for their transformation capability on the tropical maize line LPC13 used here, best results were obtained from the EHA105 cells when applied at OD_{550 nm} = 0.5–1.0. Physical microwounds before the Agro-infection proved to be an excellent way to promoting both the T-DNA transferring toward the embryo-scutellum and the increasing of rates of transient GUS expression. The highest frequencies of transient GUS expression corresponding to the scutellum-cells as well as the regeneration of whole transgenic plants emerged from them, were obtained using immature embryos wounded by bombarding at 80 lb/in² followed for vacuum infiltration before and during the Agro-infection, respectively, or using embryos wounded by 5 s-sonication (without vacuum infiltration) before the Agro-infection. Transformation frequencies up to 5.41% and 6.82% were obtained from the Agro-infected embryos wounded by particle-bombardment and sonication, respectively. Analyses of the progenies confirmed the sexual transmission of the introduced genes and their stable expression.