Redefining the damselfly families: a comprehensive molecular phylogeny of Zygoptera (Odonata)

An extensive molecular phylogenetic reconstruction of the suborder Zygoptera of the Odonata is presented, based on mitochondrial (16S, COI) and nuclear (28S) data of 59% of the 310 genera recognized and all (suspected) families except the monotypic Hemiphlebiidae. A partial reclassification is proposed, incorporating morphological characters. Many traditional families are recovered as monophyletic, but reorganization of the superfamily Coenagrionoidea into three families is proposed: Isostictidae, Platycnemididae and Coenagrionidae. Archboldargia Lieftinck, Hylaeargia Lieftinck, Palaiargia Förster, Papuargia Lieftinck and Onychargia Selys are transferred from Coenagrionidae to Platycnemididae, and Leptocnemis Selys, Oreocnemis Pinhey and Thaumatagrion Lieftinck from Platycnemididae to Coenagrionidae. Each geographically well‐defined clade of Platycnemididae is recognized as a subfamily, and thus Disparoneurinae (i.e. Old World ‘Protoneuridae’) is incorporated, Calicnemiinae is restricted, and Allocnemidinae (type genus: Allocnemis Selys) subfam.n ., Idiocnemidinae (type genus: Idiocnemis Selys) subfam.n . and Onychargiinae (type genus: Onychargia Selys) subfam.n . and Coperini trib.n . (type genus: Copera Kirby) are described. Half of Coenagrionidae belongs to a well‐supported clade incorporating Coenagrion Kirby and the potential subfamilies Agriocnemidinae, Ischnurinae and Pseudagrioninae. The remainder is less well defined, but includes the Pseudostigmatidae and New World Protoneuridae that, with Argiinae and Teinobasinae, may prove valid subfamilies with further evidence. Ninety‐two per cent of the genera formerly included in the polyphyletic Amphipterygidae and Megapodagrionidae were studied. Pentaphlebiidae, Rimanellidae and Devadattidae fam.n . (type genus: Devadatta Kirby) are separated from Amphipterygidae, and Argiolestidae, Heteragrionidae, Hypolestidae, Philogeniidae, Philosinidae and Thaumatoneuridae from Megapodagrionidae. Eight further groups formerly placed in the latter are identified, but are retained as incertae sedis; the validity of Lestoideidae, Philogangidae and Pseudolestidae is confirmed. For some families (e.g. Calopterygidae, Chlorocyphidae) a further subdivision is possible; Protostictinae subfam.n . (type genus: Protosticta Selys) is introduced in Platystictidae. Numerous new combinations are proposed in the Supporting Information. Many long‐established families lack strong morphological apomorphies. In particular, venation is incongruent with molecular results, stressing the need to review fossil Odonata taxonomy: once defined by the reduction of the anal vein, Protoneuridae dissolves completely into six clades from five families.     

Emergence pattern,microhabitat choice,and population structure of the Maghribian endemic Gomphus lucasii Selys, 1849 (Odonata: Gomphidae) in northeastern Algeria

Emergence of Gomphus lucasii Selys, 1849, an unstudied Maghreb endemic, was synchronised by overwintering in the final stadium in the Seybouse River in northeastern Algeria. Regular collections revealed that half of the annual population emerged during 10 days, showing a typical ‘spring species’ emergence pattern. Sex ratio was slightly male biased (51%). Males and females did not differ in vertical stratification. Emergence support choice was not random, but rather depended on support height, body size, and daily population density. Mortality was caused mainly by ants, although deformity of tenerals and bird predation were also important factors. Gomphus lucasii has been assessed as vulnerable (International Union for Conservation of Nature (IUCN) Red List), and the information provided in our study will be helpful in future conservation efforts.     

Birding and DNA: species for the new millennium

Capsule Based on the 1999 Witherby Memorial Lecture – reviews how developments in molecular and population genetics have led to a reappraisal of species limits in birds.

The taxonomy of birds of the West Palearctic has moved from the comparative stability of the ‘Voous List’ into a period of serious activity, with new data emerging in almost every issue of every evolutionary and avian journal! This activity comes from two directions. Firstly, developments in population genetics, molecular biology, acoustics, behaviour and distributional studies have opened new avenues to measuring differentiation among groups of birds. This, in turn, has led to the recognition that earlier views of what constitutes a ‘species’ are in need of modification (‘improvement’), and the emergence of the ‘lineage concept’ of species. I review some of the species concepts most relevant to avian studies, and attempt to show how and why this change has happened, and its consequences for taxonomy and species limits. Examples are given in the form of ‘case studies’, and include Carrion/Hooded Crows Corvus corone/cornix, Green-winged/Eurasian Teals Anas carolinensis/crecca and Phylloscopus warblers.     

Autumnal emergence of Anagrus wasps,egg parasitoids of Empoasca vitis,from grapevine leaves and their migration towards brambles

• 1 The Anagrus‘atomus’ parasitoid group (Hymenoptera: Mymaridae), associated with Empoasca vitis (Göthe) (Homoptera: Cicadellidae), overwinters on vegetation surrounding vineyards. The emergence of parasitoid adults from grapevine leaves in autumn was studied in north‐eastern Italy, both in relation to the E. vitis egg‐laying period and to the presence of leafhoppers overwintering as eggs on Rubus bushes.
• 2 Autumnal peaks of Anagrus captured using yellow sticky traps were observed first on grapevines and then on brambles. Parasitoid captures in vineyards were observed for more than 1 month after the last first‐instar nymphs of the grape leafhoppers were noticed. Two species belonging to the A. ‘atomus’ group, Anagrus atomus and Anagrus ustulatus, were captured both on grapevines and brambles.
• 3 Parasitoids of the A.‘atomus’ group can emerge from third‐generation grape leafhopper eggs in accordance with two different development time patterns (i.e. normal or delayed). Individuals with delayed emergence required up to 2.2‐fold more time to develop from an egg to adult than individuals with normal emergence. This meant that some parasitoid adults emerged in autumn from eggs of grape leafhopper laid in August.
• 4 A delayed emergence as a result of a slower development ensures that the A.‘atomus’ parasitoid group is synchronized with the egg‐laying of leafhoppers that overwinter as eggs on Rubus spp.
• 5 Consequently, leafhoppers overwintering as eggs on brambles play a key role in the ecology of the relationship between grape leafhoppers and the A.‘atomus’ parasitoid group.

     

Proteomics advances for precision therapy in ovarian cancer

ABSTRACT

Introduction: Due to the relatively low mutation rate and high frequency of copy number variation, finding actionable genetic drivers of high-grade serous carcinoma (HGSC) is a challenging task. Furthermore, emerging studies show that genetic alterations are frequently poorly represented at the protein level adding a layer of complexity. With improvements in large-scale proteomic technologies, proteomics studies have the potential to provide robust analysis of the pathways driving high HGSC behavior.

Areas covered: This review summarizes recent large-scale proteomics findings across adequately sized ovarian cancer sample sets. Key words combined with ‘ovarian cancer’ including ‘proteomics’, ‘proteogenomic’, ‘reverse-phase protein array’, ‘mass spectrometry’, and ‘adaptive response’, were used to search PubMed.

Expert opinion: Proteomics analysis of HGSC as well as their adaptive responses to therapy can uncover new therapeutic liabilities, which can reduce the emergence of drug resistance and potentially improve patient outcomes. There is a pressing need to better understand how the genomic and epigenomic heterogeneity intrinsic to ovarian cancer is reflected at the protein level and how this information could be used to improve patient outcomes.     

Conservation status of New Zealand frogs, 2009

Abstract

A reappraisal of the conservation status of the New Zealand frog fauna is presented using the 2008 version of the New Zealand Threat Classification System. Of New Zealand's four extant endemic species, three are judged to be ‘Threatened’ (Leiopelma hamiltoni being ‘Nationally Critical’, and L. pakeka and L. archeyi being ‘Nationally Vulnerable’) and one ‘At Risk’ (L. hochstetteri ‘Declining’). Three Leiopelma species are listed as extinct—they are known from bone deposits in caves throughout the country until some time in the last 1000 years. Three introduced and naturalised Litoria species are abundant in New Zealand although two (L. aurea and L. raniformis) are threatened in their country of origin (Australia). An additional unidentified frog taxon from northern Great Barrier Island is listed as ‘Data Deficient’.     

Craniological differentiation between European wildcats (Felis silvestris silvestris), African wildcats (F. s. lybica) and Asian wildcats (F. s. ornata): implications for their evolution and conservation

Intraspecific diversification of the wildcat (Felis silvestris), including the European wildcat (F. s. silvestris), the Asian wildcat (F. s. ornata) and the African wildcat (F. s. lybica), was examined based on 39 cranial morphology variables. The samples of free‐ranging cats originated from Britain, Europe, Central Asia and southern Africa, consisting of both nominal wildcat specimens (referred to henceforth as ‘wildcats’) and nominal non‐wildcat specimens (‘non‐wildcats’) based on museum labels. The skull morphology of ‘wildcats’ from Britain and Europe is clearly different from that of ‘wildcats’ of Central Asia and southern Africa. The latter are characterized especially by their proportionately larger cheek teeth. On the basis of principal component, discriminant function and canonical variate analyses, the skull morphology of British ‘non‐wildcats’ is less distinct than is that of British ‘wildcats’ from the skull morphologies of ‘wildcats’ of Central Asia and southern Africa. On the other hand, the skull morphology of southern African ‘non‐wildcats’ is as distinct from those of ‘wildcats’ of Britain and Europe as is that of southern African ‘wildcats’. We suggest that the evolution of the modern wildcat probably consisted of at least three different distribution expansions punctuated by two differentiation events: the exodus from Europe during the late Pleistocene, coinciding with the emergence of the steppe wildcat lineage (phenotype of Asian–African wildcat), followed by its rapid range expansion in the Old World. The second differentiation event was the emergence of the domestic cat followed by its subsequent colonization of the entire world with human assistance. Considering the recent evolutionary history of, and morphological divergence in, the wildcat, preventing hybridization between the European wildcat and the domestic cat is a high conservation priority. © 2004 The Linnean Society of London, Biological Journal of the Linnean Society, 2004, 83 , 47–63.     

Theoretical Model of the Three-dimensional Structure of a Disease Resistance Gene Homolog Encoding Resistance Protein in Vigna mungo

Abstract

Plant disease resistance (R) genes, the key players of innate immunity system in plants encode ‘R’ proteins. ‘R’ protein recognizes product of avirulance gene from the pathogen and activate downstream signaling responses leading to disease resistance. No three dimensional (3D) structural information of any ‘R’ proteins is available as yet. We have reported a ‘R’ gene homolog, the 'VMYR1′, encoding ‘R’ protein in Vigna mungo. Here, we describe the homology modeling of the 'VMYR1′ protein. The model was created by using the 3D structure of an ATP-binding cassette transporter protein from Vibrio cholerae as a template. The strategy for homology modeling was based on the high structural conservation in the superfamily of P-loop containing nucleoside triphosphate hydrolase in which target and template proteins belong. This is the first report of theoretical model structure of any ‘R’ proteins.     

Expression of a costly, plastic secondary sexual trait is correlated with age and condition in a damselfly with two male morphs

Males of the damselfly Mnais costalis Selys (Odonata: Calopterygidae) are morphologically and behaviourally polymorphic, typically existing as clear-winged non-territorial ‘sneaks’ and orange-winged territorial ‘fighters’. The amount of orange pigment in the wing, as measured with a chromameter, varied between individuals, and decreased as the reproductive season progressed. Young individuals maintained in the laboratory on high or low nutrient diets differed in the amount of pigment that developed in the wing. Males in the high nutrient group developed darker wings faster than those in the low nutrient group. Young adults of both sexes and morphs were fed ¹⁴C-radiolabelled tryptophan or tyrosine (precursors of the pigments ommochrome and melanin, respectively). Ommochrome was restricted to the pseudopterostigma of the males of both morphs and was not present in females. The presence of tyrosine in the wing cells of orange males, but not of clear males, indicated that the orange pigment is at least partly constituted from melanin. These data show that at least some pigment levels must be maintained continuously in the wings of orange males, and that maintenance is costly as it is compromised at low nutrient levels.     

Vegetation influence on ectomycorrhizal inoculum Available to sub-arctic willow (Salix lapponum L.) planted in an upland Site

Summary

Restoration of scrub and woodland in deforested upland sites is an important conservation activity. However, little is known about the mycorrhizal colonisation potential of upland soils or the factors that influence the distribution of mycorrhizal inoculum. We investigated the effect of existing vegetation on mycorrhizal colonisation potential for a sub-arctic willow (Salix lapponum) by planting uninoculated cuttings into plotsrepresenting two upland habitats with either grassand herbs (‘grass’) or Vaccinium myrtillus (‘vaccinium’) and assessing mycorrhizal colonisation after 14 months using morphological and molecular techniques. From 40 willow cuttings (20 in each habitat), DNA sequences of rive ectomycorrhizal (EcM) fungal taxa were recovered: Laccaria proxima, Thelephora terrestris, Hebeloma sp., ‘Thelephoraceae sp.’ and ‘Pezizales sp.’. Cuttings in the ‘grass’ habitat were dominated by Laccaria proxima and ‘Pezizales sp.’ and in the ‘vaccinium’ habitat by Thelephora terrestris which was absent from the ‘grass’ habitat. There were no significant differences between habitats in frequency of EcM inoculum (overall percentage of cuttings colonised = 70%) or colonisation potential (overall mean percentage of root tips colonised per cutting = 20 %). These data suggest that the mycorrhizal colonisation potential and diversity of fungi available to willow in these upland soils are low and planted willow may benefit from inoculum enhancement.     

Egg development in the mosquito Anopheles albimanus

Summary

In the mosquito, Anopheles albimanus, previtellogenic egg development was completed by 48 h after emergence, and vitellogenic growth was completed by 36 h after a blood meal. Ecdysteroid levels reached a peak of 800 pg/female by 18 h, while vitellin levels rose to their maximum 36–48 h after a blood meal. Most of the ecdysteroids present in the female before 36 h behaved as ‘free’ hormone, while after 42 h the ecdysteroids were ‘conjugated’. Injection of 20-hydroxyecdysone into non-blood-fed females induced degeneration of the resting stage oocytes, but vitellogenin synthesis was detectable by autoradiography. Injection of 5 μ of 20-hy-hroxyecdysone into blood-fed decapitated females induced almost precisely normal levels of vitellin. Detailed analysis of the effect of decapitating blood-fed females suggested that the release of factors from the head (e.g., egg development neurosecretory hormone) occurs as an all-or-none phenomenon, and probably occurs twice.     

Pollen morphology of Trigonostemon and its relatives (Euphorbiaceae)

The pollen of Trigonostemon and the related genera Dimorphocalyx, Ostodes, Tritaxis and Jatropha (outgroup) has been studied with light microscopy, and scanning and transmission electron microscopy. The two major pollen types within Trigonostemon correlate well with macromorphological characters. Species belonging to the Trigonostemon reidioides type have pollen with ‘croton pattern’ ornamentation, a pistil with deeply divided stigmas (to at least half the length of the stigma arm) and stamens with a protruding appendage on the connective, while species of the Trigonostemon verrucosus type have verrucate (to almost gemmate) pollen, stigmas that are shortly cleft and stamens without an appendage on the connective. Dimorphocalyx, Ostodes, Tritaxis and Jatropha (outgroup) have similar pollen morphology, while Trigonostemon deviates from these genera in the absence of the ‘vertically’ striate ornamentation on the subunits. Therefore, when compared with an existing phylogeny of the Euphorbiaceae, the pollen characters of Trigonostemon appear to be derived. Moreover, because the ‘croton pattern’ ornamentation itself is widely shared by the ‘inaperturate crotonoids’, the loss of that structure in the Trigonostemon verrucosus type pollen is considered a further apomorphy.     

Early Middle Ordovician scolecodonts from north‐western Argentina and the emergence of labidognath polychaete jaw apparatuses

Scolecodonts provide fossil evidence of the evolution and diversification of jaw‐bearing polychaetes from the latest Cambrian onwards. However, their record before the Darriwilian (Middle Ordovician) is scarce worldwide, which limits our understanding of key evolutionary events. One such event is the emergence of taxa possessing the asymmetrical labidognath‐type jaw apparatus architecture, which became common in the Middle Ordovician and is often dominant throughout the Palaeozoic. Here, we document a small collection of Dapingian scolecodonts from the Capillas section, Sierras Subandinas, north‐western Argentina. The isolated elements recovered allowed us to reconstruct the distinctive jaw apparatus, and to introduce a new taxon, Andiprion paxtonae gen. et sp. nov. The maxillary apparatus of Andiprion is intermediate between the symmetrognath type of the Early Ordovician Kadriorgaspis and the labidognath type that is present in polychaetaspids and related taxa. The apparatus architecture of Andiprion corresponds best to the labidognath type, but the morphology of the individual jaws suggests that it may be the most primitive representative of this lineage currently known. We propose that Andiprion‐like forms were ancestral to polychaetaspids, polychaeturids and ramphoprionids. The Capillas collection provides supporting evidence for the evolutionary homology of the ‘basal plate’ and the left first maxilla. Thus the labidognath‐type asymmetry, with an unpaired left maxilla III, developed as a result of gradual reduction in size of the first right jaw (‘basal plate’) in front of the carriers, instead of loss or fusion of anterior maxillae.     

Oviposition site selection and avoidance of additional mating by females of the dragonfly,Cordulia aenea amurensis Selys (Corduliidae)

Females of an odonate species in which oviposition sites overlap with mating sites may adopt one or more of the following strategies when they lay eggs except when they ‘trade’ mating for access to suitable oviposition sites or for services (guarding, etc.) provided by males: (1) ovipositing at hidden places; (2) ovipositing at a time when males are neither patrolling nor watching; (3) indicating non-receptivity by a behavioral display. The density of ovipositing females of the dragonfly, Cordulia aenea amurensisSelys which was studied between 1970 and 1983 at a pond (Hôrai-numa, Sapporo, Hokkaido) had a high negative correlation with the distance from ‘entrance’ (a part of shore at which the arrival of most adults seems to have occurred). On the other hand, oviposition was rarely observed at a sector being distant from entrance in spite of the inference that larval survivorship was probably high at this sector. Most females oviposited among emergent vegetation in which approach of males to them was difficult, and they scarcely traveled across the open water in search of oviposition sites. Therefore, most females of the population studied were considered to adopt the first strategy. The second and third strategy were not adopted by the population studied. Finally, the influences of some environmental factors and traits possessed by a species on the adoption of these tactics or on the execution of the ‘trades’ were discussed.     

A NEW ACOUSTIC SIGNAL OF THE FRUIT-FLIES DROSOPHILA SIMULANS AND D. MELANOGASTER

ABSTRACT

We found a new acoustic signal in Drosophila simulans (si) and D. melanogaster (me). It is a ‘rejection signal’ (RS) produced by adult males and young males and females in response to the courting behaviour of mature males who emit ‘pulse songs’ (i.e. love song: LS). It occurs most frequently in si, less in adults me except if the interacting males belong to different chemical morphs (i.e. temperate or equatorial population). There are no differences in the LS characteristics directed to various sexes and ages. The RSs produced by adult males or by young animals do not differ significantly either. They are emitted by neither virgin nor fecundated adult me females but a few times by virgin adult si females. The RS (like the LS) is a multipulse signal but intervals between pulses are about twice those of LS, around 90 ms for si and 80 ms for me. They are very irregular, as is the distribution of energy along the bandwidth mainly between 300 and 800 Hz for si and 200 and 600 Hz for me. The sound level of the RS is from 10 to 20 dB less than the LS. The RS seems to be linked to the ‘flicking’ behaviour produced by both wings, while the LS always corresponds to the so-called ‘wing vibration’.     

The high‐quality genome of Brassica napus cultivar ‘ZS11’ reveals the introgression history in semi‐winter morphotype

Allotetraploid oilseed rape (Brassica napus L.) is an agriculturally important crop. Cultivation and breeding of B. napus by humans has resulted in numerous genetically diverse morphotypes with optimized agronomic traits and ecophysiological adaptation. To further understand the genetic basis of diversification and adaptation, we report a draft genome of an Asian semi‐winter oilseed rape cultivar ‘ZS11’ and its comprehensive genomic comparison with the genomes of the winter‐type cultivar ‘Darmor‐bzh’ as well as two progenitors. The integrated BAC‐to‐BAC and whole‐genome shotgun sequencing strategies were effective in the assembly of repetitive regions (especially young long terminal repeats) and resulted in a high‐quality genome assembly of B. napus ‘ZS11’. Within a short evolutionary period (~6700 years ago), semi‐winter‐type ‘ZS11’ and the winter‐type ‘Darmor‐bzh’ maintained highly genomic collinearity. Even so, certain genetic differences were also detected in two morphotypes. Relative to ‘Darmor‐bzh’, both two subgenomes of ‘ZS11’ are closely related to its progenitors, and the ‘ZS11’ genome harbored several specific segmental homoeologous exchanges (HEs). Furthermore, the semi‐winter‐type ‘ZS11’ underwent potential genomic introgressions with B. rapa (A_r). Some of these genetic differences were associated with key agronomic traits. A key gene of A03.FLC3 regulating vernalization‐responsive flowering time in ‘ZS11’ was first experienced HE, and then underwent genomic introgression event with A_r, which potentially has led to genetic differences in controlling vernalization in the semi‐winter types. Our observations improved our understanding of the genetic diversity of different B. napus morphotypes and the cultivation history of semi‐winter oilseed rape in Asia.     

Slow food and the politics of pork fat: Italian food and European identity

This paper explores the emergence of the Slow Food Movement, an international consumer movement dedicated to the protection of ‘endangered foods.’ The history of one of these ‘endangered foods’, lardo di Colonnata, provides the ethnographic window through which I examine Slow Food's cultural politics. The paper seeks to understand the politics of ‘slowness’ within current debates over European identity, critiques of neo-liberal models of rationality, and the significant ideological shift towards market-driven politics in advanced capitalist societies.     

Emergence pattern,site selection,and seasonal regulation of Onychogomphus costae Selys, 1885 (Odonata: Gomphidae) in northeastern Algeria

Emergence and seasonal regulation of the dragonfly Onychogomphus costae Selys, 1885, were surveyed thoroughly during two consecutive years from two nearby stretches upstream the Seybouse River, northeastern Algeria. The emergence season started in mid-May and lasted 68 and 58 days showing a peak in late May and early June in 2011 and 2012, respectively. During the two years 2011 and 2012, 50% of annual emergence occurred after 25 and 22 days, respectively. Sex ratio was slightly but not significantly male biased. Female exuviae were recorded at higher height than males. Height of the exuviae fixation was positively correlated to support height and head width. Percentage mortality at emergence was mainly due to deformity and predation counting from 7.9% to 9.15% of the total emergent population. The species seasonal regulation is inferred and discussed based on the emergence temporal pattern and larval development.     

Transactions of the Botanical Society of Edinburgh

Summary

Evidence is adduced that the ‘hypogynous bodies’ found in two unrelated sections of Hypericum are, at the same time, ‘new’ organs in Hypericum and yet homologous with sterile stamen facicles in other genera of the Guttiferae. Their reappearance is related to the development of specialised insect pollination.