心内科患者医院感染鲍氏不动杆菌的耐药性分析

目的了解心内科住院患者医院感染鲍氏不动杆菌的耐药性,为指导临床合理用药提供依据。方法从2010—2012年心内科住院患者送检标本中分离鲍氏不动杆菌,采用PHOENIX-100全自动细菌鉴定药敏系统进行细菌鉴定及药敏试验,并对结果进行统计分析。结果2010-2012年心内科住院患者共分离出166株鲍氏不动杆菌,其中泛耐药菌株34株,检出率为20．5％。药敏结果显示鲍氏不动杆菌对常用抗菌药物的耐药率呈逐年上升趋势,并显示出多重耐药性,对多粘菌素B、头孢哌酮／舒巴坦、亚胺培南和美罗培南等耐药率相对较低。结论鲍氏不动杆菌已成为医院感染重要病原菌,对多种抗菌药物耐药,临床应加强耐药性监测,根据药敏结果合理选用抗菌药物,以控制医院感染的暴发流行。     

泛耐药鲍氏不动杆菌看家基因和水平转移基因样本聚类分析

目的了解20株泛耐药鲍氏不动杆菌的菌株亲缘性。方法完成该组泛耐药鲍氏不动杆菌2种与耐药相关的看家基因和54种水平转移获得与β-内酰胺类、氨基糖苷类、喹诺酮类耐药相关基因以及13种接合性质粒、转座子、插入序列、整合子等可移动遗传元件遗传标记检测,并对检测结果作样本聚类分析。结果20株泛耐药鲍氏不动杆菌已经发生演化,并存在2个克隆传播：1-4—6号菌株和2—5—7—8—9—10—11—12—13—14—15-16—17—18-19号菌株。结论与耐药相关的看家基因和水平转移获得的耐药基因均为显性遗传,本研究耐药菌所观察的表型与之相对应,为追溯耐药菌传播途径提供了方便。     

由鲍氏不动杆菌引起神经外科患者医院内感染性脑膜炎的暴发流行[英J／Wroblewska MM…／／J Hospital Infect

鲍氏不动杆菌及其密切相关的菌株3和菌株13TU是医院内获得性感染的常见病原菌,而且鲍氏不动杆菌感染可以在重症住院患者中引起快速流行,并且倾向于有多重耐药性。但是由于对快速多变的生物分类学缺乏了解且没有切实可行的菌种鉴定方法,故不动杆菌属大多数菌种的生态学尚未被阐明。     

内蒙古地区临床危重患者三种常见感染细菌耐药基因的检测及耐药性分析

目的:探讨内蒙古地区临床危重患者常见感染细菌耐药基因的检测及耐药性相关因素,以便临床合理运用抗菌药物,为病原菌感染的预防和控制提供依据。方法:选取2010年1月至2013年1月在我院重症监护室治疗的病例中检测出的215株细菌为研究对象,运用相关的检测手段分析细菌的耐药性和耐药基因情况。结果:经过临床的检测后得出大肠埃希菌、肺炎克雷伯菌、鲍氏不动杆菌分别为85株、55株和75株,其中产ESBLs大肠埃希菌54株,非产ESBLs大肠埃希菌31株;产ESBLs肺炎克雷伯菌15株,非产ESBLs肺炎克雷伯菌40株。大肠埃希菌、肺炎克雷伯菌、鲍氏不动杆菌对美罗培南、亚胺培南的敏感性最高,且在产与非产ESBLs菌株耐药上比较有差异性(P0.05);产与非产ESBLs菌株耐药基因检测方面比较无明显差异性(P0.05)。结论:大肠埃希菌、肺炎克雷伯菌、鲍氏不动杆菌均存在多重耐药情况,且耐药与喹诺酮耐药机制有一定的相关性。     

呼吸机相关性肺炎鲍氏不动杆菌感染的临床特征分析

目的：研究呼吸机相关性肺炎鲍氏不动杆菌感染的临床特征。方法：选取2010 年1 月到2015 年1 月我院收治的应用呼吸 机患者130 例,根据是否合并肺炎鲍氏不动杆菌感染将患者分为研究组（86 例）和对照组（44 例）,分析呼吸机相关性肺炎鲍氏不 动杆菌的临床特征,然后根据药敏实验选择应用药物进行治疗,并观察治疗效果。结果：呼吸机相关性肺炎鲍氏不动杆菌感染的 分布科室主要以ICU 为主,大约为76.74％,神经外科次之,大约为8.14％;研究组呼吸机应用时间（18.72± 3.15）天显著长于对照 组（6.18± 0.02）天,两组比较差异具有统计学意义（P＜0.05）;研究组经舒巴坦联合左氧氟沙星或者亚胺培南治疗后总有效率为 91.86％。结论：呼吸机相关性肺炎鲍氏不动杆菌多发生于ICU,且感染者呼吸机应用时间较长,联合治疗效果显著。     

cry8E启动子指导的非晶体蛋白GabR在苏云金芽胞杆菌HD73菌株中的表达

【目的】利用cry8E基因启动子指导的高效表达载体pHT315-8E21b,构建一个能够在苏云金芽胞杆菌(Bacillus thuringiensis,简称Bt)中正确表达非晶体蛋白GabR的重组菌株。【方法】将苏云金芽胞杆菌中的功能基因gabR装载到cry8E基因启动子指导的高效表达载体pHT315-8E21b上,转入到HD73-无晶体突变株后获得重组菌株HD-8E-gabR。通过SDS-PAGE和凝胶阻滞等方法对GabR蛋白的表达和功能进行分析。【结果】通过SDS-PAGE及蛋白定量等方法首次证明了在Bt表达体系中cry8E基因启动子指导的高效表达载体能够表达非晶体蛋白GabR,且通过碱裂解的方法可以提高GabR蛋白在Bt系统中的溶解性。进一步凝胶阻滞试验证明GabR能与其调控启动子PgabT结合。【结论】证明了cry8E基因启动子指导的Bt表达系统具有大量表达非晶体类蛋白的能力。     

一株抑真菌、对甜菜夜蛾高效的苏云金芽胞杆菌菌株

为了扩大苏云金芽胞杆菌的杀虫谱及生防范围,通过抑真菌和杀虫生物活性测定,筛选到一株抑真菌并对甜菜夜蛾高效的菌株Bt519-1.此菌株对所测试的小麦赤霉、黄瓜灰霉等8种真菌都有不同程度的抑制作用,且完全抑制这些真菌孢子的萌发.通过室内生物测定发现该菌株对甜菜夜蛾具有很高的杀虫活性,半致死浓度(LC50>)仅为5.5 μg/mL.经特异引物检测,证明该菌株含有6种杀虫蛋白基因:crylAa、crylAb、crylAc、cry1I、cry2和vip3A.经SDS-PAGE分析,Bt519-1菌株分别产生分子量大约为135 kD～130 kD、95 kD、80 kD、70 kD和65 kD～60 kD的几种杀虫晶体蛋白.在有无几丁质的培养基中都能产生较高活性的几丁质酶.试验证明苏云金芽胞杆菌Bt519-1是一株既杀虫又拮抗真菌的多功能生防菌株.     

Bt新菌株资源的采集与鉴定

【目的】寻找对致倦库蚊高效的苏云金芽胞杆菌(Bacillus thuringiensis,Bt)杀蚊菌株新资源。【方法】从福建省的武夷山自然保护区、建阳、建瓯、浦城等多个地区采集土壤样品,采用热处理法从土壤中分离Bt菌株,并测定其对致倦库蚊活性的效果。【结果】从125份土壤样品中分离出71株Bt菌株,经生物测定得到4株对致倦库蚊有效菌株(QQ13、QQ42、QQ66和QQ92)。其中,QQ66和QQ92有较高的毒性,均有几丁质酶基因,没有检测到cry1、cry1Ⅰ、cry2、cry4、cry5、cry6、cry7、cry8、cry9、cry10和cry11基因,在75～100 ku处各有一条杀虫晶体蛋白条带。【结论】采集和鉴定到的Bt新菌株资源将对致倦库蚊的生物防治起到促进作用。     

肺部感染患者分离的鲍氏不动杆菌的耐药性分析

了解本院肺部感染患者分离的鲍氏不动杆菌的耐药性。分析了自2007—2008年本院肺部感染患者分离的鲍氏不动杆菌的耐药性资料。2a间本院从肺部感染患者的痰标本中共分离到鲍氏不动杆菌124株,80％以上来源于ICU及神经内、外科,这些分离株对阿米卡星、环丙沙星及头孢他啶等抗生素高度耐药,对头孢吡肟仍保持较高敏感,尚未发现对亚胺培南及美洛培南的耐药株。临床医生要重视病原学监测,合理使用抗生素,避免耐药茵株的产生和流行。     

SZZ-Harpin融合蛋白在苏云金芽孢杆菌中的表达及活性测定*

PCR扩增编码SZZ短肽与植物过敏素 (harpin)融合蛋白的 1 5kb基因片段 ,克隆到苏云金杆菌 (^{Bacillusthuringiensis} ,Bt)表达载体pHZB1上 ,并置于晶体蛋白cry1类基因的启动子下游 ,从而构建表达质粒pHSZH。将表达载体pHSZH电激转化晶体缺陷型的BtK CryB菌株 ,获得工程菌Bt pHSZH。SDS PAGE蛋白分析和生物测定结果显示 ,培养 4 8h的Bt pH SZH明显表达SZZ Harpin融合蛋白 ,表达产物具有诱导烟草     

Comparative genomic analysis of Xanthomonas axonopodis pv. citrumelo F1, which causes citrus bacterial spot disease, and related strains provides insights into virulence and host specificity

Xanthomonas axonopodis pv. citrumelo is a citrus pathogen causing citrus bacterial spot disease that is geographically restricted within the state of Florida. Illumina, 454 sequencing, and optical mapping were used to obtain a complete genome sequence of X. axonopodis pv. citrumelo strain F1, 4.9 Mb in size. The strain lacks plasmids, in contrast to other citrus Xanthomonas pathogens. Phylogenetic analysis revealed that this pathogen is very close to the tomato bacterial spot pathogen X. campestris pv. vesicatoria 85-10, with a completely different host range. We also compared X. axonopodis pv. citrumelo to the genome of citrus canker pathogen X. axonopodis pv. citri 306. Comparative genomic analysis showed differences in several gene clusters, like those for type III effectors, the type IV secretion system, lipopolysaccharide synthesis, and others. In addition to pthA, effectors such as xopE3, xopAI, and hrpW were absent from X. axonopodis pv. citrumelo while present in X. axonopodis pv. citri. These effectors might be responsible for survival and the low virulence of this pathogen on citrus compared to that of X. axonopodis pv. citri. We also identified unique effectors in X. axonopodis pv. citrumelo that may be related to the different host range as compared to that of X. axonopodis pv. citri. X. axonopodis pv. citrumelo also lacks various genes, such as syrE1, syrE2, and RTX toxin family genes, which were present in X. axonopodis pv. citri. These may be associated with the distinct virulences of X. axonopodis pv. citrumelo and X. axonopodis pv. citri. Comparison of the complete genome sequence of X. axonopodis pv. citrumelo to those of X. axonopodis pv. citri and X. campestris pv. vesicatoria provides valuable insights into the mechanism of bacterial virulence and host specificity.     

Biofilm formation, epiphytic fitness, and canker development in Xanthomonas axonopodis pv. citri

The phytopathogenic bacterium Xanthomonas axonopodis pv. citri is responsible for the canker disease affecting citrus plants throughout the world. Here, we have evaluated the role of bacterial attachment and biofilm formation in leaf colonization during canker development on lemon leaves. Crystal violet staining and confocal laser scanning microscopy analysis of X. axonopodis pv. citri strains expressing the green fluorescent protein were used to evaluate attachment and biofilm formation on abiotic and biotic (leaf) surfaces. Wild-type X. axonopodis pv. citri attached to and formed a complex, structured biofilm on glass in minimal medium containing glucose. Similar attachment and structured biofilm formation also were seen on lemon leaves. An X. axonopodis pv. citri gumB mutant strain, defective in production of the extracellular polysaccharide xanthan, did not form a structured biofilm on either abiotic or biotic surfaces. In addition, the X. axonopodis pv. citri gumB showed reduced growth and survival on leaf surfaces and reduced disease symptoms. These findings suggest an important role for formation of biofilms in the epiphytic survival of X. axonopodis pv. citri prior to development of canker disease.     

DNA polymorphisms and biocontrol of bacillus antagonistic to citrus bacterial canker with indication of the interference of phyllosphere biofilms

Citrus bacterial canker caused by Xanthomonas axonopodis pv. citri is a devastating disease resulting in significant crop losses in various citrus cultivars worldwide. A biocontrol agent has not been recommended for this disease. To explore the potential of bacilli native to Taiwan to control this disease, Bacillus species with a broad spectrum of antagonistic activity against various phytopathogens were isolated from plant potting mixes, organic compost and the rhizosphere soil. Seven strains TKS1-1, OF3-16, SP4-17, HSP1, WG6-14, TLB7-7, and WP8-12 showing superior antagonistic activity were chosen for biopesticide development. The genetic identity based on 16S rDNA sequences indicated that all seven native strains were close relatives of the B. subtilis group and appeared to be discrete from the B. cereus group. DNA polymorphisms in strains WG6-14, SP4-17, TKS1-1, and WP8-12, as revealed by repetitive sequence-based PCR with the BOXA1R primers were similar to each other, but different from those of the respective Bacillus type strains. However, molecular typing of the strains using either tDNA-intergenic spacer regions or 16S-23S intergenic transcribed spacer regions was unable to differentiate the strains at the species level. Strains TKS1-1 and WG6-14 attenuated symptom development of citrus bacterial canker, which was found to be correlated with a reduction in colonization and biofilm formation by X. axonopodis pv. citri on leaf surfaces. The application of a Bacillus strain TKS1-1 endospore formulation to the leaf surfaces of citrus reduced the incidence of citrus bacterial canker and could prevent development of the disease.     

Sensitive and specific detection of Xanthomonas axonopodis pv. citri by PCR using pathovar specific primers based on hrpW gene sequences

A sensitive and specific assay was developed to detect citrus bacterial canker caused by Xanthomonas axonopodis pv. citri, in leaves and fruits of citrus. Primers XACF and XACR from hrpW homologous to pectate lyase, modifying the structure of pectin in plants, were used to amplify a 561 bp DNA fragment. PCR technique was applied to detect the pathogen in naturally or artificially infected leaves of citrus. The PCR product was only produced from X. axonopodis pv. citri among 26 isolates of Xanthomonas strains, Escherichia coli (O157:H7), Pectobacterium carotovorum subsp. carotovorum, and other reference microbes.     

A LOV protein modulates the physiological attributes of Xanthomonas axonopodis pv. citri relevant for host plant colonization

Recent studies have demonstrated that an appropriate light environment is required for the establishment of efficient vegetal resistance responses in several plant-pathogen interactions. The photoreceptors implicated in such responses are mainly those belonging to the phytochrome family. Data obtained from bacterial genome sequences revealed the presence of photosensory proteins of the BLUF (Blue Light sensing Using FAD), LOV (Light, Oxygen, Voltage) and phytochrome families with no known functions. Xanthomonas axonopodis pv. citri is a Gram-negative bacterium responsible for citrus canker. The in silico analysis of the X. axonopodis pv. citri genome sequence revealed the presence of a gene encoding a putative LOV photoreceptor, in addition to two genes encoding BLUF proteins. This suggests that blue light sensing could play a role in X. axonopodis pv. citri physiology. We obtained the recombinant Xac-LOV protein by expression in Escherichia coli and performed a spectroscopic analysis of the purified protein, which demonstrated that it has a canonical LOV photochemistry. We also constructed a mutant strain of X. axonopodis pv. citri lacking the LOV protein and found that the loss of this protein altered bacterial motility, exopolysaccharide production and biofilm formation. Moreover, we observed that the adhesion of the mutant strain to abiotic and biotic surfaces was significantly diminished compared to the wild-type. Finally, inoculation of orange (Citrus sinensis) leaves with the mutant strain of X. axonopodis pv. citri resulted in marked differences in the development of symptoms in plant tissues relative to the wild-type, suggesting a role for the Xac-LOV protein in the pathogenic process. Altogether, these results suggest the novel involvement of a photosensory system in the regulation of physiological attributes of a phytopathogenic bacterium. A functional blue light receptor in Xanthomonas spp. has been described for the first time, showing an important role in virulence during citrus canker disease.     

柑桔溃疡病菌重组单链抗体的高效表达及活性检测

运用PCR方法扩增利用核糖体展示技术筛选的抗柑桔溃疡病菌(Xanthomonas axonopodis pv.citri,XAC)的单链抗体(ScFv95)基因片段,将单链抗体基因重组到原核表达载体pET30a( )中,构建单链抗体高效表达载体pET30a( )-XAC-ScFv。再将pET30a( )-XAC-ScFv质粒转化进大肠杆菌BL21(DE3)后诱导表达,并对表达产物进行纯化、复性及活性检测。获得了抗XAC单链抗体的高效表达蛋白,以包涵体形式存在的表达蛋白大小约32kDa。包涵体蛋白经过变性、纯化和复性后,初步获得有功能的单链抗体。同时用Biacore分析XAC-ScFv-95与XAC LPS作用,结果表明复性后的XAC-ScFv-95具有较高的亲和力,从而为柑桔溃疡病菌XAC的免疫诊断和防治研究提供了新的工具和途径。     

Mutation in the xpsD gene of Xanthomonas axonopodis pv. citri affects cellulose degradation and virulence

The Gram-negative bacterium Xanthomonas axonopodis pv. citri, the causal agent of citrus canker, is a major threat to the citrus industry worldwide. Although this is a leaf spot pathogen, it bears genes highly related to degradation of plant cell walls, which are typically found in plant pathogens that cause symptoms of tissue maceration. Little is known on Xac capacity to cause disease and hydrolyze cellulose. We investigated the contribution of various open reading frames on degradation of a cellulose compound by means of a global mutational assay to selectively screen for a defect in carboxymethyl cellulase (CMCase) secretion in X. axonopodis pv. citri. Screening on CMC agar revealed one mutant clone defective in extracellular glycanase activity, out of nearly 3,000 clones. The insertion was located in the xpsD gene, a component of the type II secretion system (T2SS) showing an influence in the ability of Xac to colonize tissues and hydrolyze cellulose. In summary, these data show for the first time, that X. axonopodis pv. citri is capable of hydrolyzing cellulose in a T2SS-dependent process. Furthermore, it was demonstrated that the ability to degrade cellulose contributes to the infection process as a whole.     

Amplification of DNA of Xanthomonas axonopodis pv. citri from historic citrus canker herbarium specimens

Herbaria are important resources for the study of the origins and dispersal of plant pathogens, particularly bacterial plant pathogens that incite local lesions in which large numbers of pathogen genomes are concentrated. Xanthomonas axonopodis pv. citri (Xac), the causal agent of citrus bacterial canker disease, is a notable example of such a pathogen. The appearance of novel strains of the pathogen in Florida and elsewhere make it increasingly important to understand the relationships among strains of this pathogen. USDA-ARS at Beltsville, Maryland maintains approximately 700 herbarium specimens with citrus canker disease lesions up to 90 years old, originally collected from all over the world, and so is an important resource for phytogeographic studies of this bacterium. Unfortunately, DNA in herbarium specimens is degraded and may contain high levels of inhibitors of PCR. In this study, we compared a total of 23 DNA isolation techniques in combination with 31 novel primer pairs in order to develop an efficient protocol for the analysis of Xac DNA in herbarium specimens. We identified the most reliable extraction method, identified in terms of successful amplification by our panel of 31 primer pairs. We also identified the most robust primer pairs, identified as successful in the largest number of extracts prepared by different methods. We amplified Xac genomic sequences up to 542 bp long from herbarium samples up to 89 years old. Primers varied in effectiveness, with some primer pairs amplifying Xac DNA from a 1/10,000 dilution of extract from a single lesion from a citrus canker herbarium specimen. Our methodology will be useful to identify pathogens and perform molecular analyses of bacterial and possibly fungal genomes from herbarium specimens.     

柑橘溃疡病及其微生物防治研究进展

柑橘是我国第一大水果,柑橘溃疡病是导致柑橘产量和品质下降的最具破坏性细菌性病害之一,给柑橘产业造成了巨大的经济损失,严重阻碍了柑橘产业的可持续发展。微生物防治柑橘溃疡病具有安全、环保、高效等优点,是当前研究的热点。本文主要概述了柑橘溃疡病特征及其病原菌分类、分布,全面分析了柑橘溃疡病病原菌主要致病机理和协助致病机理;系统梳理了柑橘溃疡病生防微生物的多样性;重点总结了微生物通过产生活性物质、诱导激活植物免疫防御系统等防治柑橘溃疡病的作用机制;最后,我们提出了柑橘溃疡病微生物防治面临的挑战以及未来可能的解决途径,以期为柑橘产业的健康发展提供参考。     

The solution structure of the outer membrane lipoprotein OmlA from Xanthomonas axonopodis pv. citri reveals a protein fold implicated in protein-protein interaction

The outer membrane lipoprotein A (OmlA) belongs to a family of bacterial small lipoproteins widely distributed across the beta and gamma proteobacteria. Although the role of numerous bacterial lipoproteins is known, the biological function of OmlA remains elusive. We found that in the citrus canker pathogen, Xanthomonas axonopodis pv. citri (X. citri), OmlA is coregulated with the ferric uptake regulator (Fur) and their expression is enhanced when X. citri is grown on citrus leaves, suggesting that these proteins are involved in plant-pathogen interaction. To gain insights into the function of OmlA, its conformational and dynamic features were determined by nuclear magnetic resonance. The protein has highly flexible N- and C- termini and a structurally well defined core composed of three beta-strands and two small alpha-helices, which pack against each other forming a two-layer alpha/beta scaffold. This protein fold resembles the domains of the beta-lactamase inhibitory protein BLIP, involved in protein-protein binding. In conclusion, the structure of OmlA does suggest that this protein may be implicated in protein-protein interactions required during X. citri infection.