Genetic distance: probing the origin of a Papua New Guinea isolate

In an attempt to elucidate the origin of an isolated peripheral Highland, Papua New Guinea population (the Karimui), HLA, blood group and serum protein markers were investigated. Due to the paucity of published HLA marker data, genetic distances using non-HLA markers were constructed between populations surrounding the Karimui and compared in 3-dimensions by multidimensional scaling analysis. Genetically, the Karimui is most closely associated with Highland populations to the east and northeast. In a attempt to develop a more global view of relationships, distances constructed from HLA marker data between 2 close Highland populations, 2 Coastal Papua New Guinea populations and 4 Australian aborigine populations were compared. The Karimui associated most closely with the Highland populations and equidistantly and at opposite poles from both the Coastal Papuan and aborigine populations. A paradigm of the composition of the founder group and the early population dynamics is developed from genetic, linguistic and anthropologic data.     

Genetic microdifferentiation in the Semai Senoi of Malaysia.

Blood samples, demographic and cultural data were collected from seven settlements of Semai Senoi, a swidden farming ethnic group of Malaysia. Three genetic loci (ABO blood group, hereditary ovalcytosis, and hemoglobin) were analyzed in a total sample of 546 individuals. These data indicate a considerable degree of genetic microdifferentiation in this area of the Semai distribution. Parent-offspring birthplace data (analyzed by means of a migration matrix) and settlement histories show that settlements are not strongly isolated. Genetic differences in the study area demonstrate a reasonable correspondence with migration and the history of the settlements. Genetic convergence also occurs through the addition of migrant groups to established populations leading to new patterns of marriage between donor and recipient groups. The genetic structure of the total Semai population through time thus comprises a mosaic of shifiting allele frequencies in a series of semi-isolated local populations.     

Convergence of genetic distances in a migration matrix model

A recurring problem with the use of migration matrix models of genetic differentiation has to do with their convergence properties. In practice, predictions can be drawn from these models only at equilibrium; but in the case of the standard predictors (most of which are modifications of Wright's FST), it can take an unrealistically large number of generations to approach equilibrium. An alternative set of predictors, the set of all pairwise genetic distances among the populations that define the rows and columns of the migration matrix, is investigated here. These distances are shown analytically to converge much more rapidly than the more commonly used predictors. In an application of the model to migration data on a human population from Papua New Guinea, it takes only about three to four generations for the pairwise distances to converge, in contrast to more than 100 generations for one of the standard predictors. In this case, moreover, the distances predicted by the model at equilibrium are similar to those calculated from the available genetic data.     

A multivariate approach to fingerprint variation in Papua New Guinea: Perspectives on the evolutionary stability of dermatoglyphic markers

In the Markham Valley of Papua New Guinea, multivariate graphical displays of serological, anthropometric, and dermatoglyphic population structures are compared pursuant to the hypothesis that fingerprints have a slower velocity of evolutionary change and, therefore, are preferable biological markers for prehistorical reconstructions. Samples from nine villages, which represent three geographical and linguistic populations, are plotted in two dimensions using appropriate multivariate techniques for maximally portraying between sample variability. Both the serological and morphometric displays are found lacking in close clusters, which demonstrates a lack of congruence with the shared languages and, presumably, the ethnohistorical origins of the three populations. These discrepancies between biology and prehistory appear to reflect recent environmental and stochastic perturbations. On the other hand, fingerprint displays conform closely to language affiliations, relatively undisturbed by environmental variation and genetic drift. The relative congruence between ethnohistorical affiliation and fingerprint diversity is further corroborated by comparing the three measures of population structure with geographical distances, using partial rank correlations. In terms of explained variance, the level of association with fingerprints is more than twice than with anthropometry, and 13 times greater than with serology. Whereas metric and serological data provide distorted portrayals of known biohistorical relationships among the study populations, fingerprint data mirror these relationships. The theoretical foundations and consequences of this observation are discussed with respect to the broader question of polygenic versus monogenic biological markers.     

A new species of Lesticus Dejean, 1828 (Coleoptera,Carabidae) from the Finisterre Range,Papua New Guinea and a key to the genera of pterostichine-like Harpalinae of New Guinea

Lesticus finisterrae (Carabidae: Pterostichini) sp. n. (type locality: Finisterre Range, Papua New Guinea), is described and characters to differentiate it from other “Trigonotomi” species are given. A key to the genera of pterostichine-like Harpalinae of the island, including all genera of Morionini, Cratocerini, Drimostomatini, Abacetini, Loxandrini and Pterostichini, is provided. The genus Rhytisternus (Pterostichini) is for the first time reported from New Guinea, represented by the likely adventive species Rhytisternus laevis (Macleay). The previously unknown male of Stegazopteryx ivimkaensis Will (Drimostomatini) is described.     

Genetic structure and heterozygosity in the kuru region,Eastern Highlands of New Guinea

Genetic structure of 20 of the 37 linguistic groups in the Eastern Highlands of New Guinea including the kuru region is analyzed using information on blood groups and serum protein polymorphisms. The average individual is heterozygous at 28.6% of loci and the average number of alleles per locus is 1.234. Coefficients of kinship for linguistic groups range from 0.005 for the sweet potato cultivating North Fore to 0.075 for the isolated Pawaians whose dietary staple is sago and who depend more on hunting and gathering. As one selects linguistic groups with smaller and smaller population size and increasing isolation, one finds that kinship coefficients rise as much as tenfold, but there is no concomitant loss of heterozygosity or trend toward fixation of alleles. Genetic relationships established by genetic distance trees and by principal components analysis are comparable and are consistent with other anthropological observations.     

Contributions to the Cladocera fauna from Papua New Guinea

Twenty-eight taxa of the Cladocera are identified in collections from Papua New Guinea, 17 being new records for New Guinea, bringing the total number of Cladocera taxa reported for this region to 39. Most of the taxa are circumtropical. One species (Sarsilatona papuana) is endemic to Papua New Guinea and northern Australia. The species list includes two species that are normally listed as Holarctic:Alonella nana andAlona rustica. Widespread genera such asDaphnia, Pleuroxus, Disparalona, Acroperus were strikingly absent from the Papua New Guinean material.     

Electromyography of pongid shoulder muscles II. Deltoid, rhomboid and "rotator cuff"

Red cell antigen, serum protein and red cell enzyme groups were determined for a series of 1,821 individuals belonging to six language families in Western New Guinea. Three of the language families represent groupings of languages spoken by people in the swampy coastal plain of south central Western New Guinea, two belong to the Central Highlands and one to the Lake Plain area near the confluence of the Idenburg and Rouffaer Rivers. The distribution of genetic markers reveals similarities with other parts of New Guinea. The A₂ allele is absent in the ABO system, the frequency of Ns in the MNS system is very high as is the R₁ (CDe) allele in the Rh system. Hp¹ frequencies are high, and the transferrin allele Tf^D 1 is present as in other parts of New Guinea. In the red cell enzyme systems several alleles were detected which are characteristic of Papuan, and in some cases other Melanesian populations: these include MDH³, PGK⁴, PGK², PGM⁹₂, PGM¹⁰₂, as well as some very restricted alleles such as Peptidase B⁶ and Pep B². Three indices of genetic distance were computed. The most striking results are the genetic closeness of the Dani and Moni populations from the Central Highlands to the Asmat on the southern coastal plain, and the relative remoteness of the Awyu from the other south coastal populations. The results are discussed in terms of recent theories on the origin and dispersal of Papuan languages.     

Optimisation of metric matrix embedding by genetic algorithms

Summary To improve the convergence properties of embedding distance geometry, a new approach was developed by combining the distance-geometry methodology with a genetic algorithm. This new approach is called DG-OMEGA (DG, optimised metric matrix embedding by genetic algorithms). The genetic algorithm was used to combine well-defined parts of individual structures generated by the distance-geometry program, and to identify new lower and upper distance bounds within the original experimental restraints in order to restrict the sampling of the metrisation algorithm to promising regions of the conformational space. The algorithm was tested on cyclosporin A, which is notorious for its intrinsic difficult sampling properties. A set of 58 distance restraints was employed. It was shown that DG resulted in an improvement of convergence behaviour as well as sampling properties with respect to the standard distance-geometry protocol.     

Population structure and genetic heterogeneity in the Upper Markham Valley of New Guinea.

An analysis is presented of the standardized Wahlund's variances (f) in gene frequencies of the ABO, Rh and MNS blood group systems among 19 villages of the Atsera isolate of the upper Markham Valley, Papua New Guinea. In the past, there has been some disagreement over the relative importance of population structure and natural selection in the determination of these variances. The Lewontin-Krakauer test is presented as a means of resolving this disagreement. According to this test, selectively neutral variation in gene frequencies should generate essentially homogeneous values of f for all loci, a homogeneity which can be tested by comparing the value of (formula: see text) to a theoretical (formula: see text) expected when variations in (formula: see text) are due solely to sampling error. The observed value of (formula: see text) for the Atsera isolate is 2.9 x 10(-5), which is not significantly different from the expected values that range from 1.23 x 10(-5) to 2.46 x 10(-5) depending on the constant used in calculating (formula: see text). Therefore it appears that nonselective aspects of population structure such as genetic drift and intervillage migration are responsible for the recorded genetic variation in this isolate.     

Patterns of Y-chromosome diversity intersect with the Trans-New Guinea hypothesis

The island of New Guinea received part of the first human expansion out of Africa (>40,000 years ago), but its human genetic history remains poorly understood. In this study, we examined Y-chromosome diversity in 162 samples from the Bird's Head region of northwest New Guinea (NWNG) and compared the results with previously obtained data from other parts of the island. NWNG harbors a high level of cultural and linguistic diversity and is inhabited by non-Austronesian (i.e., Papuan)-speaking groups as well as harboring most of West New Guinea's (WNG) Austronesian-speaking groups. However, 97.5% of its Y-chromosomes belong to 5 haplogroups that originated in Melanesia; hence, the Y-chromosome diversity of NWNG (and, according to available data, of New Guinea as a whole) essentially reflects a local history. The remaining 2.5% belong to 2 haplogroups (O-M119 and O-M122) of East Asian origin, which were brought to New Guinea by Austronesian-speaking migrants around 3,500 years ago. Thus, the Austronesian expansion had only a small impact on shaping Y-chromosome diversity in NWNG, although the linguistic impact of this expansion to this region was much higher. In contrast, the expansion of Trans-New Guinea (TNG) speakers (non-Austronesian) starting about 6,000-10,000 years ago from the central highlands of what is now Papua New Guinea, presumably in combination with the expansion of agriculture, played a more important role in determining the Y-chromosome diversity of New Guinea. In particular, we identified 2 haplogroups (M-P34 and K-M254) as suggestive markers for the TNG expansion, whereas 2 other haplogroups (C-M38 and K-M9) most likely reflect the earlier local Y-chromosome diversity. We propose that sex-biased differences in the social structure and cultural heritage of the people involved in the Austronesian and the TNG expansions played an important role (among other factors) in shaping the New Guinean Y-chromosome landscape.     

The seasonal factors influencing child malnutrition on the Nembi Plateau,Papua New Guinea

A sample of children from the Nembi Plateau, Papua New Guinea, is monitored for nutritional status, episodes of sickness and disease, diets, work activity of mothers, and weight changes; and health and census records are examined for seasonal patterns of disease, deaths, birth, and birth weights. A seasonal pattern in birth weight reinforced by a seasonal pattern in growth performance and compounded by a seasonal pattern of disease suggests that the time of year in which a child is born is important to the child's growth and health. Yields, labor, and ritual surrounding the gardens give rise to the seasonal pattern of events that impinge upon the health of children.     

进口巴布亚新几内亚原木上截获吉丁虫的鉴定

描述江苏口岸首次从巴新原木上截获的8种吉丁虫,隶属于窄吉丁Agrilus,澳纹吉丁Anilara,星吉丁Chrysobothris,胸斑吉丁Belionota,驼翅吉丁Cyphogastra。编制族属检索表,介绍8种的鉴别特征,并配以8种吉丁虫的原色图,对检疫性害虫窄吉丁非中国种的分类状况作了简介。     

Studies of endemic cretinism in Papua New Guinea: digital and palmar dermatoglyphic patterns

We have tested the hypothesis that the abnormal development of the central nervous system seen in endemic cretinism might be accompanied by concurrent abnormal dermatoglyphic patterns. We compared digital and palmar dermatoglyphics of normal individuals and endemic cretins inhabiting the Huon Peninsula of Papua New Guinea. The population sampled from the Irumu River Valley included 118 males and 114 females with 22 male cretins and 23 female cretins. The population sampled from the Wantoat River Valley included 72 males and 38 females with 12 male cretins. No pathognomonic patterns were found that could identify the endemic cretin subpopulation. However, the occurrence of a number of differences between controls and cretins suggests that subtle changes in dermatoglyphic patterns accompany the anomalous development of the CNS secondary to maternal iodine deficiency. We discuss the significance of these findings and compare the dermatoglyphic patterns of normal Irumu and Wantoat natives and 21 other populations of Papua New Guinea.     

Swidden cultivation in forest and savanna in lowland southwest Papua New Guinea

Ecological aspects of traditional swidden cultivation by Bine- speaking groups in wetland areas of lowland southwest Papua New Guinea are examined. A notable feature of the area is the coexistence of extensive, polycultural forest cultivation and more intensive, specialized savanna cultivation. Both agrosystems occur on soils of inherently similar properties. The savanna vegetation is secondary in character and, once established, is better suited to more intensive swidden cultivation based on taro (Colocasia esculenta). The agrosystems in question represent stages in the local development of agriculture, and, although multiple causes of intensification may be involved, the study confirms that lowland, as well as highland, areas of New Guinea have provided development opportunities for traditional cultivators.