Tissue banking in South Africa: a 19-year history

The establishment of a Tissue Bank and the science of Tissue Banking in South Africa started in the 1960s and is still developing. This article describes the development and growth of Tissue Banking in South Africa. The current emphasis is to supply viable bone products that have been produced under the best possible quality controlled circumstances; with the collaboration between different Organ Donation Organisations. Through collaboration, a dramatic increase in the number of donors was noted over the years. Concurrently, there was a dramatic increase in the usage of different allograft products and now necessitates the development of new graft materials for expanding patient options. As an ongoing concern, the Tissue Bank in South Africa experienced an ever increase in costs to enhance quality/safety controls: increase in historical patient information, documentation and serological testing in a population struggling to control HIV. To date, the South African Tissue Bank has not experienced any untoward patient incidence since the 1960s and currently is getting over 500 donors per year.     

Mokola virus involved in a human contact (South Africa)

Isolations of Mokola virus (MOKV) are rare, but in South Africa and Zimbabwe this genotype 3 lyssavirus variant has been occasionally found in domestic mammals (cats and a dog) with a total of 17 virus isolates (South Africa 10, Zimbabwe 7) having been recovered during the past 30 years. We report the identification of a MOKV isolate involved in a human contact in Grahamstown (Eastern Cape, South Africa) and a genetic comparison with previously characterized isolates. This reported MOKV case was in a previously immunized cat. While the continual recovery of MOKV isolates in domestic cats is speculative of the existence of a reservoir host species among bats or rodents, the lack of protection with currently used vaccines is discussed and the need for biologicals with a wider spectrum of protection against this lyssavirus variant is highlighted.     

Relatedness and investment in children in South Africa

Investment in children is examined using a nationally representative sample of 11,211 black (African) households in South Africa. I randomly selected one child from each household in the sample and calculated the average genetic relatedness of the other household members to the focal child. Using multivariate statistical analysis to control for background variables such as age and sex of child, household size, and socioeconomic status, I examine whether the coefficient of relatedness predicts greater household expenditures on food, on health care, and on children’s clothing. I also test whether relatedness is associated with health and schooling outcomes. The results are consistent with an inclusive fitness model: Households invest more in children who are more closely related. Two exceptions were found: in rural areas, genetic relatedness was negatively associated with money spent on food and on health care. Explanations for these results are discussed. Preliminary versions of this paper were presented at the 2003 Human Behavior and Evolution Society annual meeting in Lincoln, Nebraska, and at the 2003 Human Behavioral Ecology Workshop in Bangor, Maine. Kermyt G. Anderson is Assistant Professor at the Department of Anthropology at the University of Oklahoma. He received his Ph.D. from the University of New Mexico in 1999 and was a postdoctoral research fellow at the Population Studies Center at the University of Michigan for three years. His research focuses on biosocial models of fertility, parental investment, paternity confidence, marriage/divorce, and children’s outcomes. He is currently involved in a long-term longitudinal survey of young adults in Cape Town, South Africa, and in several projects examining the effects of HIV/AIDS in the U.S.     

Distribution of cancer mortality rates by province in South Africa

IntroductionCancer mortality rates are expected to increase in developing countries. Cancer mortality rates by province remain largely unreported in South Africa. This study described the 2014 age standardised cancer mortality rates by province in South Africa, to provide insight for strategic interventions and advocacy.Methods2014 deaths data were retrieved from Statistics South Africa. Deaths from cancer were extracted using 10th International Classification of Diseases (ICD) codes for cancer (C00-C97). Adjusted 2013 mid-year population estimates were used as a standard population. All rates were calculated per 100 000 individuals.ResultsNearly 38 000 (8%) of the total deaths in South Africa in 2014 were attributed to cancer. Western Cape Province had the highest age standardised cancer mortality rate in South Africa (118, 95% CI: 115–121 deaths per 100 000 individuals), followed by the Northern Cape (113, 95% CI: 107–119 per 100 000 individuals), with the lowest rate in Limpopo Province (47, 95% CI: 45–49 per 100 000). The age standardised cancer mortality rate for men (71, 95% CI: 70–72 per 100 000 individuals) was similar to women (69, 95% CI: 68–70 per 100 000). Lung cancer was a major driver of cancer death in men (13, 95% CI: 12.6–13.4 per 100 000). In women, cervical cancer was the leading cause of cancer death (13, 95% CI: 12.6–13.4 per 100 000 individuals).ConclusionThere is a need to further investigate the factors related to the differences in cancer mortality by province in South Africa. Raising awareness of risk factors and screening for cancer in the population along with improved access and quality of health care are also important.     

Beyond Just Research: Experiences from Southern Africa in Developing Social Learning Partnerships for Resource Conservation Initiatives

There is a well-acknowledged communication or knowledge gap between scientists and decision-makers. Many scientists who take on the challenge of narrowing this gap operate on the understanding that their role is to communicate their findings in a one-way flow of information: from science to decision-makers. However, to be effective scientists must engage in an ongoing social learning process with decision-makers, and regard themselves as facilitators, and also as one among many stakeholders who have valid and important ecological knowledge. The developing world poses some particular challenges in this regard, specifically in terms of the large number of local level subsistence resources users who are important de facto decision-makers. We examine four natural resource management case studies from South Africa that differ in spatial scale and complexity, ranging from a single village to a whole biome. We distil seven lessons to help guide development of social learning processes and organizations in similar situations relating to natural resource planning and management. The lessons pertain to: maintaining 'key individuals' within social learning processes; the role of researchers; the formulation of research questions that social learning processes require adaptive long-term funding and capacity support; that local resource users are key decision-makers in developing countries; some perspectives on knowledge; and the need to measure research success.     

Used for ill; used for good: a century of collecting data on race in South Africa

Abstract

Data on race have been collected in South African censuses for a century. We examine the role played by the census in solidifying race as a social statistic and show that, in contrast to the majority of situations, operational and legislative factors rendered the census largely unimportant as a vehicle for doing this. Since 1994, race has been entirely self-reported and not subject to state reinterpretation. We examine the implications of this for future data collection exercises and caution against reifying race as a predictor of social outcomes in post-apartheid South Africa, and argue for its gradual phasing out.     

Adolescent Social Attitudes in South Africa and Swaziland

A content analysis was undertaken of stories written by adolescents in urban townships in South Africa and in an urban setting in Swaziland. The findings concerning the nature of the actors and the relationships between actors in the stories suggest that though South Africans in their early years encounter more elements of modernity than do the Swazis, in their present situation they view the world as having less rational elements, fewer psychological satisfactions, and more threats to their physical welfare than do the Swazis.     

Black Jews in the Northern Province: a study of ethnic identity in South Africa

The article examines ways in which the Lemba people of the Northern Province of South Africa have used their oral history and traditional customs associated with distant Semitic origins in Yemen, to claim a modern Jewish identity in racially divided South Africa. While Lemba live in Mozambique and Zimbabwe as well as in South Africa, it is only in the latter that belief in a Jewish origin is found. The article seeks to show that early white missionaries and colonial officials propagated a Semitic identity for the Lemba and in their writings emphasized the differences between the Lemba and their African neighbours through comparisons of Lemba customs with Jewish communities in Europe. Such writings contributed to an ethos of a distinct identity, through which, via the establishment of the Lemba Cultural Association, middle-class Lemba intellectuals sought to promote the Lemba. This was achieved in a situation where the apartheid regime in South Africa pursued a divide and rule policy which allowed the Bantustans to discriminate against ethnic minorities under their control.     

Orphanhood and fertility in young adults: Evidence from South Africa

I study the relation between orphanhood and fertility patterns in young adults using a longitudinal survey from the city of Cape Town, South Africa. The data set combines two survey waves with a year-by-year life history calendar that records key outcomes (e.g., schooling, work, fertility). It also provides information on so-called ‘parental investments’ (time and material support), family background, and literacy and numeracy test scores. I find that orphans exhibit significantly higher rates of teenage pregnancy. In particular, teenage motherhood is 19% points more likely among (female) orphans. These results suggest that orphanhood may leave a long-lasting ‘imprint’ in terms of premature fertility, especially in teenage females.     

A new basal dicynodont from the Upper Permian of South Africa

The skull of a small anomodont therapsid, from the Tapinocephalus Assemblage Zone (Abrahamskraal Formation, Beaufort Group, Upper Permian) in Northern Cape Province, South Africa, represents a new basal dicynodont and is described in detail. Colobodectes cluveri gen. et sp. nov. is distinguished from other dicynodonts by an anteroposteriorly extensive caniniform process, parietals that were broadly overlapped posterolaterally by posterodorsal processes of the postorbitals, diverging anterior palatal ridges, and a dorsoventrally low foramen magnum. A phylogenetic analysis indicates that Colobodectes is the basalmost member of a dicynodont clade that excludes Eodicynodon . This position is not particularly strong, as two additional steps are needed to make Colobodectes and Eodicynodon oosthuizeni exchange places on the most parsimonious tree. Another discovery of the phylogenetic analysis is that there is little basis for recognizing Eodicynodon oelofseni as the closest relative of E. oosthuizeni . The former species is identified as the sister taxon of a clade that includes the latter and all other dicynodonts.     

Decomposing race and gender differences in underweight and obesity in South Africa

Using data from the National Income Dynamics Study, we document differentials in both underweight and obesity across race and gender in post-Apartheid South Africa. Using a nonlinear decomposition method, we decompose these differences across gender within race and then across race within gender. Less than one third of the differences in obesity and underweight across gender are explained by differences in covariates. In contrast, at least 70% of the obesity differences across race are explained by differences in covariates. Behavioral variables such as smoking and exercise explain the largest part of the bodyweight differentials across gender. For bodyweight differentials across race within gender, however, socioeconomic status and background variables have the largest explanatory power for obesity differentials, while background variables play the key role in explaining the underweight differentials. These results indicate that eradicating obesity and underweight differentials will require targeting policies to specific groups.     

Notes on the Habitat and Adult Behaviour of Three Red-Listed <Emphasis Type="Italic">Colophon</Emphasis> spp. (Coleoptera: Lucanidae) of the Cape Floristic Region,South Africa

The habitat restrictions of three species of Colophon (C. stokoei, C. neli, C. westwoodi) in the Cape Floristic Province are discussed, together with their patterns of seasonal activity and biological features in captivity, to augment the biological background needed for their effective conservation management.     

Refugia, dispersal and divergence in a forest archipelago: a study of Streptocarpus in eastern South Africa

We describe a scenario of plant speciation across a relict forest archipelago in South Africa involving Pleistocene habitat expansion-contraction cycles, dispersal and adaptation to lower temperatures. This is the first population level study using molecular data in South African forests and has significant implications for conservation efforts in this area. Populations of the mesophytic forest floor herbs Streptocarpus primulifolius sensu lato and Streptocarpus rexii were sampled throughout their range in the naturally fragmented forests of eastern South Africa in order to investigate population genetic and phylogenetic patterns within the species complex, using nuclear microsatellites, nuclear ribosomal ITS (internal transcribed spacer) sequences and chloroplast genome sequences. S. primulifolius harbours high levels of genetic diversity at both the nuclear (mean HE = 0.50) and the chloroplast level (each population fixed for a unique haplotype). This is consistent with populations of these coastal species being Pleistocene relicts. In contrast, populations of S. rexii in cooler habitats at higher altitudes and lower latitudes harbour little or no nuclear genetic diversity (mean HE = 0.09) and most share a common chloroplast haplotype. The split of S. rexii from populations intermediate between the two species (S. cf. primulifolius) occurred between 0 and 0.44 million years ago according to the calibrated ITS phylogeny of the taxa. The low genetic diversity and homogeneity of S. rexii is congruent with this species having reached its current range during the Holocene. We found no evidence of monophyly of any of the taxa in this study, which we consider a consequence of recent evolution in a fragmented habitat.     

The Politics of Ecology in South Africa on the Radical Left

The South African ecologist and political activist Edward Roux (1903–1966) used evolutionary biology to argue against racism. During the cold-war, he transformed his communist beliefs into advocacy for scientific rationalism, management, and protection of nature against advancing capitalism. These pleas for saving the environment served as a vehicle for questioning the more risky issue of evolution and racial order in society. The link between ecological and political order had long been an important theme among the country's ecologists and politicians alike. The statesman Jan Christian Smuts' holistic theory of evolution and racial order inspired the nation's ecologists to sanctify an ecologically informed racial policy. This idealist informed methodology stood in direct opposition to the materialist approach to ecology of Roux. These methodological debates reflected differing political support from within the Union Party and people on the radical left, respectively. Ecology was of concern to politicians because understandings of the order of nature had direct implications for the racial order of the South African society. This revised version was published online in July 2006 with corrections to the Cover Date.     

Announcing a Still Bay industry at Sibudu Cave, South Africa

Sibudu Cave in KwaZulu-Natal, South Africa, has a long Middle Stone Age (MSA) sequence with good organic preservation. The uppermost MSA sequence includes industries attributed to the final and late MSA and the Howiesons Poort. Below the Howiesons Poort are two layers containing some thin, bifacial lanceolate points, mostly in the form of distal and proximal fragments. These double-pointed foliates are the fossile directeur of the Still Bay Industry, and importantly, this Sibudu industry provides confirmation that the Still Bay predates the Howiesons Poort Industry. Technologically, the points from Sibudu are comparable to those from other South African sites with Still Bay occurrences (e.g., Blombos Cave and Hollow Rock Shelter). Although dating of the Sibudu Still Bay is preliminary, its age falls within the range of that at Blombos. For the past two decades, archaeologists have rejected the idea of a Still Bay Industry occurring outside of the Western Cape, but the Still Bay at Sibudu shows that this industry was, indeed, geographically widespread.     

Founder populations and the current status of exotic parrots in South Africa

Parrots (families Psittacidae and Cacatuidae) are one of the most threatened taxa of birds, with a combination of threats to wild populations, including capture for the cage bird market, habitat modification and destruction, persecution, disease, and threats from introduced species. As a result of the group's popularity as a cage bird, and the transport of vast numbers of individuals across the globe (both legally and illegally), the establishment of populations beyond their natural ranges has likely been enhanced. This review reports on c. 30 parrot species that have been observed outside of their natural ranges in South Africa, most likely derived, and supplemented, from both intentional and unintentional releases. Of these, the Rose-ringed Parakeet Psittacula krameri and at least one Agapornis species have become established as breeding wild populations. Like other invasive species they may pose threats to local biodiversity; however, all are strongly associated with major urban centres where significant changes to natural biota have already occurred.     

Plant community and landscape patterns of a floodplain wetland in Maputaland, Northern KwaZulu-Natal, South Africa

The lower Mkuze River floodplain is located east of the Lebombo Mountains on the Maputaland Coastal Plain in northern KwaZulu‐Natal, South Africa. The vegetation ecology of the floodplain was examined using the hierarchical framework described by landscape ecology theory. The smallest spatial scale to which the vegetation of the floodplain was described was the relatively homogeneous units of plant communities. From a landscape ecology perspective this level of analysis is referred to as the grain. Six plant communities were identified using two‐way indicator species analysis (TWINSPAN) classification. The distribution of these plant communities were correlated to an underlying inundation‐sedimentation gradient using the ordination technique, detrended correspondence analysis (DCA). This correlation provided a useful foundation for the examination of ecological processes and phenomena at the next higher, spatially coarser level within the landscape hierarchy, namely the reference level. This reference level was described by three functional types delimited by differing flooding and sedimentation regimes. The use of landscape ecology theory guided the interpretation of results by explicitly recognizing the importance of spatial heterogeneity, hierarchical organization and dynamics, and proved invaluable in developing process‐based understanding of the vegetation ecology of the lower Mkuze River floodplain.