Stable baselines of temporal turnover underlie high beta diversity in tropical arthropod communities

While the high species diversity of tropical arthropod communities has often been linked to marked spatial heterogeneity, their temporal dynamics have received little attention. This study addresses this gap by examining spatio‐temporal variation in the arthropod communities of a tropical montane forest in Honduras. By employing DNA barcode analysis and Malaise trap sampling across 4 years and five sites, 51,596 specimens were assigned to 8,193 presumptive species. High beta diversity was linked more strongly to elevation than geographic distance, decreasing by 12% when only the dominant species were considered. When sampling effort was increased by deploying more traps at a site, beta diversity only decreased by 2%, but extending sampling across years decreased beta diversity by 27%. Species inconsistently detected among years, likely transients from other settings, drove the low similarity in species composition among traps only a few metres apart. The dominant, temporally persistent species substantially influenced the cyclic pattern of change in community composition among years. This pattern likely results from divergence–convergence dynamics, suggesting a stable baseline of temporal turnover in each community. The overall results establish that large sample sizes are necessary to reveal species richness, but are not essential for quantifying beta diversity. This study further highlights the need for standardized methods of sampling and species identification to generate the comparative data required to evaluate biodiversity change in space and time.     

Tsunami and tropical island ecosystems: a meta-analysis of studies in Andaman and Nicobar Islands

Tropical islands are special and sensitive ecosystems which are subjected to various disturbances imposed by human activities and natural disasters. A detailed study about the changing landscape scenarios of these fragile island systems induced by various driving factors could be used for setting up measurements in support of conservation and sustainable development projects. The current research is a meta-analysis of the studies carried out in Andaman and Nicobar islands which analyzed the impact of tsunami of 2004 using geospatial tools. Based on the analysis, it was observed that the Nicobar islands were more affected compared to the Andaman islands. The majority of the researchers used pre- and post-tsunami satellite imagery and adopted visual interpretation method to delineate the changed classes. The study infers uplift of land in Andaman (exposing) and subsidence in Nicobar islands (inundation) with severe damage to the coastal elements like mangroves, coral reefs, plantations and in few cases interior forest. The analysis showed there were no records of the damage for some small islands. Finally, it is concluded that utility of microwave satellite data for change analysis will prove better in regions like Andaman and Nicobar where it is difficult to get cloud free optical data because of the high monsoon periods in these islands. It is also suggested that future work utilizing suitable temporal satellite imagery should focus on the extent of recovery of vegetation and other coastal elements which suffer the impact of disaster.     

Large scale spatial and temporal variation in recruitment to fish populations on coral reefs

Summary Visual census was used to sample young of the year of fish species recruited to each of two habitats on seven lagoonal platform reefs of the Capricorn-Bunker Group, Great Barrier Reef. The reefs sampled span an area 70 km in extent. In 1983, 62 species from 13 families were detected as recruits on reef slope sites. The total number of cruits, and the number of each of 6 of 16 species tested, differed significantly among reefs, despite the fact that differences among sites within reefs did not exist, and that sampled slopes were chosen to be hydrographically, and physiographically as similar as possible. Lagoonal patch reefs were sampled in two years. In 1982, 76 species of 11 families occurred as recruits. In 1983, 86 species of 12 families were recorded. All of 22 species common enough to test showed some significant variation in abundance among reefs, years, or both. For 9 species, significant year x reef interactions occurred, demonstrating that relative recruitment success among reefs varied between years. Reasons for the substantial levels of variability are discussed, and implications for the organisation of reef fish communities are considered.     

Rapid community change at a tropical upwelling site in the Galápagos Marine Reserve

The high biodiversity of tropical marine communities has attractedconsiderable interest, yet we still lack a clear understanding of the tempo ofdiversity change in these systems []. Knowledge of the conditions associated with fast or slow community assembly inthe tropics would enhance our ability to predict recovery from natural andanthropogenic disturbance and to conserve biodiversity. Here we report anunusually rapid doubling of species richness within a year in a tropical,subtidal sessile invertebrate community in a protected (non-extractive) zone ofthe Galápagos Marine Reserve (GMR). Diversity changes in the rock wallcommunity were accompanied by large increases in the percent cover, densityand/or biomass of sponges, barnacles, ascidians, and an ahermatypic coral,Tubastrea coccinea, over the 1-year studyperiod (1999–2000). Barnacle (Megabalanuspeninsularis) and ascidian (Didemnum cineraceum)biomasses increased by an order of magnitude from 1999 to 2000. The greaterabundance of sessile invertebrate prey was accompanied by significant increasesin the abundance of barnacle and Tubastrea predators(Hexaplex princeps, Asperiscalabilleeana). An estimated 37% of barnacle tissue biomass productionwas consumed in 1 year. Temperature monitoring during the studyperiod showed that this site is characterized by strong upwelling, where rapid,3.0–9.0 °C decreases in temperature occurred at harmonicsof the semi-diurnal tidal periodicity during warm (January–February), butnot during cool months (June–July). Short-term acoustic current metermeasurements revealed strong, highly variable upwelling at the study site, withevents ranging from 2–111 min in duration and maximumupwelling velocities of 32.3 cm s^–1. Thesefindings suggest that the turnover of diversity and biomass may be unusuallyrapid at tropical upwelling sites, especially where invertebrate predators areprotected from harvesting. Consequently, upwelling sites may warrant specialconsideration in the planning of marine reserves to ensure the conservation ofbiodiversity.     

西沙群岛主要岛礁鱼类物种多样性及其群落格局

为了解珊瑚礁海域鱼类物种多样性及其群落特征,作者2003年5月在西沙群岛7座主要岛礁(北礁、华光礁、金银岛、东岛、浪花礁、玉琢礁和永兴岛)采用底层刺网进行了调查,运用聚类分析和非度量多维标度(NMDS)等多元统计分析方法,对7个岛礁鱼类的种类组成、优势种、多样性和群落格局进行了分析.调查海域共记录鱼类146种,隶属10...     

The influence of habitat on the spatial variation in fish assemblage composition in an unimpacted tropical River of Ganga basin, India

Effects of local habitat variables on the structure of fish assemblage were evaluated from 50 sampling sites in a tropical River of Central India of the Ganges basin with limited anthropogenic disturbance covering premonsoon, monsoon and postmonsoon periods. Data were analyzed for 5,186 fish individuals of 24 freshwater fish species of conservation and fishery management interest. Out of the total fish species, seven belong to the ??endangered?? and 8 belong to the vulnerable category. A Cyprinid, Puntius sarana, was the most widely distributed species (frequency of occurrence 76%) out of the total species in this study. We used canonical correspondence analyses to determine the influence of environmental conditions on species occurrences and assemblage characteristics. Regarding the microhabitat, hydromorphological parameters (depth and current velocity) followed by temperature, turbidity and total dissolve solid were of significant for the structure of the fish community. Conductivity was another important factor that explained the major proportion of the variability affecting fish in their habitat choice. The other local habitat variables like overhanging vegetation and land use were of secondary but significantly important for the assemblage of the fishes. Our results suggests the importance of local environment influences on the fishes of conservation importance and their assemblage characteristics in an unimpacted river and provide a framework and reference conditions to support restoration efforts of relatively altered fish habitats in tropical rivers of India.     

Human transformation of ecosystems: Comparing protected and unprotected areas with natural baselines

Protected areas serve as reserves of biological diversity and conserve the naturalness of characteristic regional ecosystems. Numerous approaches have been applied to estimate the level of transformation of ecosystems and to compare trends inside and outside of protected areas. In this study, we apply aggregate indicators of anthropogenic pressures on ecosystems and biodiversity in a fine-scale spatial analysis to compare the level of human influence within protected and unprotected areas. The actual state of ecosystems is compared to a natural baseline that is intact or potential natural state. The results show that in a non-protected Central-European landscape, humans appropriate a considerable share of natural ecosystem productivity and carbon stocks, and significantly reduce natural biodiversity and ecosystem services. Human appropriation of net primary production reached more than 60% in total, humans reduced original biodiversity levels by 69%, and net carbon storage was considerably decreased by intensive types of land use. All three indicators significantly differed between protected areas and unprotected areas, suggesting that protected areas maintain higher biodiversity levels, store more carbon and are in total less influenced by human exploitation than average non-protected landscape. Furthermore, we bring evidence that human appropriation of net primary production is negatively related both to biodiversity and ecosystem services indicated by mean species abundance and net carbon storage at the national level. Our results contribute to the quantitative evidence of the impacts of anthropogenic transformation of natural ecosystems on the ecosystem condition, supporting the hypothesis that protected areas significantly reduce anthropogenic pressures and contribute to maintaining critical ecosystem services and biodiversity.     

Explaining variation in tropical plant community composition: influence of environmental and spatial data quality

The degree to which variation in plant community composition (beta-diversity) is predictable from environmental variation, relative to other spatial processes, is of considerable current interest. We addressed this question in Costa Rican rain forest pteridophytes (1,045 plots, 127 species). We also tested the effect of data quality on the results, which has largely been overlooked in earlier studies. To do so, we compared two alternative spatial models [polynomial vs. principal coordinates of neighbour matrices (PCNM)] and ten alternative environmental models (all available environmental variables vs. four subsets, and including their polynomials vs. not). Of the environmental data types, soil chemistry contributed most to explaining pteridophyte community variation, followed in decreasing order of contribution by topography, soil type and forest structure. Environmentally explained variation increased moderately when polynomials of the environmental variables were included. Spatially explained variation increased substantially when the multi-scale PCNM spatial model was used instead of the traditional, broad-scale polynomial spatial model. The best model combination (PCNM spatial model and full environmental model including polynomials) explained 32% of pteridophyte community variation, after correcting for the number of sampling sites and explanatory variables. Overall evidence for environmental control of beta-diversity was strong, and the main floristic gradients detected were correlated with environmental variation at all scales encompassed by the study (c. 100–2,000 m). Depending on model choice, however, total explained variation differed more than fourfold, and the apparent relative importance of space and environment could be reversed. Therefore, we advocate a broader recognition of the impacts that data quality has on analysis results. A general understanding of the relative contributions of spatial and environmental processes to species distributions and beta-diversity requires that methodological artefacts are separated from real ecological differences.     

Electron cryo-microscopy of vitrified biological specimens: towards high spatial and temporal resolution

A decade after the development of electron cryo-microscopy for vitrified specimens, its advantages and limitations are analysed. Indeed, recent work carried out by different laboratories strengthens the idea that electron cryo-microscopy might soon be an alternative method to X-ray crystallography and NMR techniques for determining the structure of biological assemblies with both high spatial and temporal resolutions. High pressure freezing allows vitrification of larger volumes of biological suspensions. Thick vitrified objects can be cryosectioned. Electron cryo-microscopy of the sections gives images having a resolution better than 2 nm. Although the high resolution imaging mode under low dose conditions is not yet fully understood, microscopes are being developed to provide better and better images. Image averaging is being facilitated by the development of both crystallization and computer methods. Thus, we can expect that electron microscopy will soon become a potential technique for structural determination at atomic resolution. Finally, much effort is being devoted to improving the temporal resolution of electron cryo-microscopy. Soon, we may be able to observe molecules during their biological activity.     

Arctic fisheries catches in Russia, USA, and Canada: baselines for neglected ecosystems

The Amerasian Arctic, covering northern Siberia (Russia), Arctic Alaska (USA), and the Canadian Arctic, extends over seven coastal Large Marine Ecosystems and makes up the seasonally ice-free part of FAO Statistical Area 18 (Arctic Sea). Historically, the harsh climate has limited marine fisheries (here excluding marine mammal hunting) to small-scale operations conducted mainly in estuaries and river deltas. Most of the catches have traditionally not been reported to FAO, with the result that total catch estimated here from 1950 to 2006 is 75 times higher than the sum of the catches reported for FAO 18 (Arctic). Catches were reconstructed from data on fishing communities in Canada and Alaska, and from various government and non-government sources for Siberia. Based on national data supplied to FAO since 1950, catches have been reported as 12,700 t in toto (reported on behalf of the former Soviet Union). This compares with our reconstructed catches of over 950,000 t, i.e., 770,000, 89,000, and 94,000 t by Russia, USA, and Canada, respectively for the same time period. The reconstructed catch (mainly whitefishes in Siberia, various salmonids in Alaska, and Arctic char in Canada) was 24,100 t year⁻¹ in 1950, but declined to 10,200 t year⁻¹ by the mid-2000s. Reasons for these trends are discussed by country, along with sources of uncertainty (particularly large for Siberia). Catches were allocated to Large Marine Ecosystems to present ecosystem-relevant baselines for the impact of fisheries on the Arctic, which can be expected to increase, as industrial fisheries move into a warming Arctic following the invasion of boreal species, unless countries apply precautionary ecosystem-based management approaches.     

Geostatistics and spatial analysis in biological anthropology

A variety of methods have been used to make evolutionary inferences based on the spatial distribution of biological data, including reconstructing population history and detection of the geographic pattern of natural selection. This article provides an examination of geostatistical analysis, a method used widely in geology but which has not often been applied in biological anthropology. Geostatistical analysis begins with the examination of a variogram, a plot showing the relationship between a biological distance measure and the geographic distance between data points and which provides information on the extent and pattern of spatial correlation. The results of variogram analysis are used for interpolating values of unknown data points in order to construct a contour map, a process known as kriging. The methods of geostatistical analysis and discussion of potential problems are applied to a large data set of anthropometric measures for 197 populations in Ireland. The geostatistical analysis reveals two major sources of spatial variation. One pattern, seen for overall body and craniofacial size, shows an east-west cline most likely reflecting the combined effects of past population dispersal and settlement. The second pattern is seen for craniofacial height and shows an isolation by distance pattern reflecting rapid spatial changes in the midlands region of Ireland, perhaps attributable to the genetic impact of the Vikings. The correspondence of these results with other analyses of these data and the additional insights generated from variogram analysis and kriging illustrate the potential utility of geostatistical analysis in biological anthropology.     

Rapid changes in bird community composition at multiple temporal and spatial scales in response to recent climate change

Although climate change is acknowledged to affect population dynamics and species distribution, details of how community composition is affected are still lacking. We investigate whether ongoing changes in bird community composition can be explained by contemporary changes in summer temperatures, using four independent long‐term bird census schemes from Sweden (up to 57 yr); two at the national scale and two at local scales. The change in bird community composition was represented by a community temperature index (CTI) that reflects the balance in abundance between low‐ and high‐temperature dwelling species. In all schemes, CTI tracked patterns of temperature increase, stability or decrease remarkably well, with a lag period of 1–3 yr. This response was similar at both the national and local scale. However, the communities did not respond fast enough to cope with temperature increase, suggesting that community composition lags behind changes in temperature. The change in CTI was caused mainly by changes in species’ relative abundances, and less so by changes in species composition. We conclude that ongoing changes in bird community structure are driven to a large extent by contemporary changes in climate and that CTI can be used as a simple indicator for how bird communities respond.     

Variability in spatial and temporal occurrence of presettlement and settlement‐stage fishes associated with shallow reefs

Presettlement and settlement‐stage fishes were studied in a large, log‐spiral bay in temperate South Africa. The aim was to describe the assemblage composition, density and distribution associated with four types of habitats common to the bay: high profile reef, low profile reef, reef‐associated sand and open sand spatially separated from reef. Samples were collected with both a plankton ring net and a light trap at each habitat type as part of a mixed‐method approach. A total of 4084 presettlement and settlement‐stage fishes belonging to 31 teleost families and 84 species were captured. Reef‐associated sand and open sand habitats yielded higher species richness and diversity than the high and low‐profile reef habitats. Engraulidae, Gobiidae, Clupeidae and Cynoglossidae were the dominant fish families captured with the ring net, while Engraulidae, Clupeidae, Carangidae and Clinidae were captured with the light trap. A temporal difference in the abundance of presettlement fishes occurred between the sampling periods with highest values recorded during the summer settlement period. Habitat type together with associated physico‐chemical variables played a pivotal role in determining presettlement fish species composition, density and distribution across habitat types.     

Catastrophic and background disturbance of tropical ecosystems at the Luquillo Experimental Forest

The forests of the Luquillo Experimental Forest Long-Term Ecological Research site are subject to low-intensity, widespread disturbance that establishes levels of background mortality that contrast with periodic catastrophic mortality resulting from hurricanes and landslides. Although catastrophic mortality is more dramatic, background mortality is still more important in determining population turnover. However, catastrophic mortality may still be an important agent in determining ecosystem structure. Catastrophic disturbances affect forest function in many ways besides mortality, some of which are only apparent in the context of long-term studies. Since most ecosystems are subject to some form of catastrophic disturbance, general principles can be derived from comparative studies of disturbance in different systems.     

Spatio–temporal structure of earthworm community and soil heterogeneity in a tropical pasture

The spatio–temporal structure of an earthworm community was assessed in a tropical Colombian pasture and compared with the patterns of soil heterogeneity. Earth–worms were sampled at six dates during a period of one year, while soil properties were assessed at a single date at the end of this period. Sample design was spatially explicit and consisted in a regular grid of 5 m mesh. At each date, 120 samples were taken for earthworm evaluations, while the single soil sampling consisted in 60 points, Multivariate and geostatistical analyses were performed to describe the spatial structure of collected data. Mantel and partial ManteTs tests were used to assess the links between the spatio-temporal patterns of earthworm distribution and soil heterogeneity.
The results clearly demonstrated the existence of structured spatial patterns in the earthworm community which were stable in time, at least at the temporal scale concerned by the study period, it mostly corresponded to an alternation of patches where particular species assemblages dominated. The ecological significance of these assemblages is discussed. Soil properties also displayed a significant spatial organisation. Only a small part of the spatio–temporal structures of earthworm distribution was correlated with soil properties. Small species were more abundant in patches where soil was more compact, while large species were associated with high root biomass and total C levels. The question whether earthworm spatio–temporal distribution induces similar patterns in soil properties or the contrary occurs is discussed. Our results suggest that earthworm community organisation mostly corresponds to a non–equilibrium system where mobile earthworm populations influence soil properties. The overall effect of earthworm community on soil is difficult to assess due to the predominance of factors that preferentially express tbetnselves at large scales in the ecological hierarchy.     

GLay: community structure analysis of biological networks

SUMMARY: GLay provides Cytoscape users an assorted collection of versatile community structure algorithms and graph layout functions for network clustering and structured visualization. High performance is achieved by dynamically linking highly optimized C functions to the Cytoscape JAVA program, which makes GLay especially suitable for decomposition, display and exploratory analysis of large biological networks. AVAILABILITY: http://brainarray.mbni.med.umich.edu/glay/.     

Primate communities: Their structure and role in tropical ecosystems

The structure of primate communities living in a number of undisturbed areas is described and compared. Species richness is highest in tropical rain forests of Africa and South America, where up to 14 different species can share the same habitat. The number of sympatric primates in woodlands and savannas is always much lower. Some striking differences in community structure may be observed between communities living in apparently similar habitats. Three major factors may be held responsible for such discrepancies: history and paleoecology, present spatial heterogeneity of the vegetation, and competition with other taxonomic groups. The role of primates in the functioning of forest ecosystems is discussed. Though their trophic impact may be important, the role they play in seed dispersal appears to be more significant; they contribute greatly to homeostasis, as well as to regeneration, of the rain forests. A number of ecological traits are particularly developed among primates and may have contributed to the rapid evolutionary success of the order. Their predominantly vegetarian diet allows them to build up higher population densities than sympatric carnivorous mammals;their arborealism permits them to make use of all edible plant material available in a tridimensional environment; the opportunistic tendencies of some cebids, cercopithecids, and pongids enable them to take advantage of a variety of habitats and situations; and finally, an extended socialization period and a long life-span, allowing them to develop social traditions, give to many of them a further possibility to adapt quickly to novel situations. This paper is a revised version of the third Osman Hill Memorial Lecture delivered at the joint meeting of the Primate Society of Great Britain and the Association for the Study of Animal Behaviour, held in London on 2/3 December 1982.