The role of behavioral dynamics in determining the patch distributions of interacting species

The effect of the behavioral dynamics of movement on the population dynamics of interacting species in multipatch systems is studied. The behavioral dynamics of habitat choice used in a range of previous models are reviewed. There is very limited empirical evidence for distinguishing between these different models, but they differ in important ways, and many lack properties that would guarantee stability of an ideal free distribution in a single-species system. The importance of finding out more about movement dynamics in multispecies systems is shown by an analysis of the effect of movement rules on the dynamics of a particular two-species-two-patch model of competition, where the population dynamical equilibrium in the absence of movement is often not a behavioral equilibrium in the presence of adaptive movement. The population dynamics of this system are explored for several different movement rules and different parameter values, producing a variety of outcomes. Other systems of interacting species that may lack a dynamically stable distribution among patches are discussed, and it is argued that such systems are not rare. The sensitivity of community properties to individual movement behavior in this and earlier studies argues that there is a great need for empirical investigation to determine the applicability of different models of the behavioral dynamics of habitat selection.     

Shark bycatch and depredation in the U.S. Atlantic pelagic longline fishery

The non-target bycatch of sharks in pelagic longline (PLL) fisheries represents a potential source of compromise to shark populations worldwide. Moreover, shark bycatch and depredation (damage inflicted on gear, bait, and catch) complicates management of sharks and other species, and can undermine the operations and financial interests of the pelagic longline industry. Thus, deducing means to reduce shark interactions is in the best interest of multiple stakeholder groups. Prior to doing so, however, the extent, cause and effect of these interactions must be better understood. In this review we address or conduct the following in relation to the U.S. Atlantic, Gulf of Mexico and Caribbean PLL fishery: (1) U.S. management governing shark interactions in the Atlantic; (2) the primary species encountered and historical shark catch data associated with PLL fishing in the Atlantic; (3) a historical comparison of area-specific shark species catch records between the two primary sources of shark catch data in this fishery; (4) the conditions and dynamics that dictate shark interactions in this fishery, and potential means to reduce these interactions, and; (5) a synthesis of the estimated impacts of this fishery on shark populations relative to other fisheries in the Atlantic. As has been found in other PLL fisheries, the blue shark (Prionace glauca) is clearly the shark species most commonly encountered in this fishery in the Atlantic, and receives the majority of attention in this review. U.S. management areas with high relative shark species diversities had a greater divergence in historical shark species percent-compositions between data sources (Pelagic Observer Program versus mandatory pelagic Logbook databases); this complicates the ability to conclude which species are most impacted by PLL fishing in those areas. The current fishing effort by the U.S. PLL fleet is small compared to that of PLL fishing targeting sharks in the Atlantic by non-U.S. fleets, and therefore poses a comparatively lower threat to the stability of Atlantic shark populations. However, incidental shark encounters are inevitable in U.S. Atlantic PLL fishing operations. Thus, it is in the best interest of all stakeholders in the Atlantic to better understand the extent and conditions governing these interactions, and to explore methods to reduce both their occurrence and those aspects leading to higher rates of incidental shark mortality.     

Seabird bycatch in the Southwest Atlantic: interaction with the Uruguayan pelagic longline fishery

This paper analyzes the spatiotemporal variation and the causes of seabird bycatch by the Uruguayan pelagic longline fleet in a region of the Atlantic Ocean where the world’s highest historical rates of seabird bycatch were recorded. The study is based on data obtained by the Uruguayan Observers Program in 29 trips, conducted from 1998 to 2004, totalling about 648,000 hooks. The bird capture per unit of effort (BCPUE) for the studied period was 0.42 birds/1,000 hooks. The highest BCPUE values were recorded in the period May–November. Three zones were identified, with BCPUEs of 2.50 birds/1,000 hooks (very high); 0.78 birds/1,000 hooks (high) and 0.04 birds/1,000 hooks (low). Though these BCPUE values are lower than those historically reported, some are still high in global terms. Night setting was found to be effective in reducing seabird bycatch, but it is necessary to implement additional measures as seabirds have access to bait also by night, especially during the more luminous moon phases.     

A first estimate of sea turtle bycatch in the industrial trawling fishery of Gabon

Gabon hosts nesting grounds for several sea turtle species, including the world’s largest rookery for the leatherback turtle (Dermochelys coriacea), Africa’s largest rookery for the olive ridley turtle (Lepidochelys olivacea) and smaller aggregations of the hawksbill turtle (Eretmochelys imbricata) and green turtle (Chelonia mydas). To assess the level of incidental captures of turtles by the Gabonese trawl fishery, an onboard observer program was conducted in the period 2012–2013. A total of 143 turtles were captured by 15 trawlers during 271 fishing days. The olive ridley turtle was the main species captured (80% of bycaught turtles), with mostly adult-sized individuals. The remaining 20% included green turtles, hawksbill turtles, leatherback turtles and undetermined species. Bycatch per unit of effort (BPUE) of olive ridley turtles varied greatly depending on the period of the year (range of means: 0.261–2.270). Dead and comatose turtles were 6.2 and 24.6% respectively (n = 65). By applying the available fishing effort to two BPUE scenarios (excluding or considering a seasonal peak), the total annual number of captures was estimated as ranging between 1026 (CI 95% 746–1343) and 2581 (CI 95% 1641–3788) olive ridley turtles, with a mortality ranging from 63 (CI 95% 13–135) to 794 (CI 95% 415–1282) turtles per year depending on the scenario and on the fate of comatose turtles. Such a potential mortality may be reason for concern for the local breeding population of olive ridley turtles and recommendations in terms of possible conservation measures and further research are given.     

The intrinsic vulnerability to fishing of coral reef fishes and their differential recovery in fishery closures

Coral reef fishes differ in their intrinsic vulnerability to fishing and rates of population recovery after cessation of fishing. We reviewed life history-based predictions about the vulnerability of different groups of coral reef fish and examined the empirical evidence for different rates of population recovery inside no-take marine reserves to (1) determine if the empirical data agree with predictions about vulnerability and (2) show plausible scenarios of recovery within fully protected reserves and periodically-harvested fishery closures. In general, larger-bodied carnivorous reef fishes are predicted to be more vulnerable to fishing while smaller-bodied species lower in the food web (e.g., some herbivores) are predicted to be less vulnerable. However, this prediction does not always hold true because of the considerable diversity of life history strategies in reef fishes. Long-term trends in reef fish population recovery inside no-take reserves are consistent with broad predictions about vulnerability, suggesting that moderately to highly vulnerable species will require a significantly longer time (decades) to attain local carrying capacity than less vulnerable species. We recommend: (1) expanding age-based demographic studies of economically and ecologically important reef fishes to improve estimates of vulnerability; (2) long term (20–40 years), if not permanent, protection of no-take reserves to allow full population recovery and maximum biomass export; (3) strict compliance to no-take reserves to avoid considerable delays in recovery; (4) carefully controlling the timing and intensity of harvesting periodic closures to ensure long-term fishery benefits; (5) the use of periodically-harvested closures together with, rather than instead of, permanent no-take reserves.     

On moment closures for population dynamics in continuous space

A first-order moment closure, the mean-field assumption that organisms encounter one another in proportion to their spatial average densities, lies at the heart of much theoretical ecology. This assumption ignores all spatial information and, at the very least, needs to be replaced by a second-order closure to gain understanding of ecological dynamics in spatially structured populations. We describe a number of conditions that a second-order closure should satisfy and use these conditions to evaluate some closures currently available in the literature. Two conditions are particularly helpful in discriminating among the alternatives: that the closure should be positive, and that the dynamics should be unaltered when identical individuals are given different labels. On this basis, a class of closures we refer to as 'power-2' turns out to provide a good compromise between positivity and dynamical invariance under relabelling.     

A pulse fishery model with closures as function of the catch: conditions for sustainability

We present a model of single species fishery which alternates closed seasons with pulse captures. The novelty is that the length of a closed season is determined by the remaining stock size after the last capture. The process is described by a new type of impulsive differential equations recently introduced. The main result is a fishing effort threshold which determines either the sustainability of the fishery or the extinction of the resource.     

Multivariate effects on seabird bycatch in the legal Patagonian toothfish longline fishery around Crozet and Kerguelen Islands

The effects of temporal, spatial, environmental and operational effects on seabird incidental mortality in the legal Patagonian toothfish longline fishery operating, between 2003 and 2006, in French exclusive economic zones of Crozet and Kerguelen Islands were analysed. During the study period, the mean bycatch rate varied from 0.05 to 0.12 birds per 1,000 hooks. Two species were concerned by incidental mortality: white-chinned petrels (88%) and grey petrels (11.5%). Males of white-chinned petrel seemed more at a risk than females. Logbooks data tended to underreport mortality when compared with dedicated fishery observers. The results indicate that temporal (season or phenology) and spatial (area) factors reflecting mortality risk for seabirds played the most significant role in the incidental mortality of the two species. Operational (integrated weight mainline, number of scaring lines and number of hooks hauled) and environmental factors (wind/vessel angle, moon brightness) were also influential, although less significantly, in increasing this mortality risk. Our two steps analyses by separately modelling the probability of presence and the abundance given presence suggest that the decrease in seabird bycatch over the period was mainly due to an important decrease in probability (occurrence) of mortality.     

Molecular resolution of marine turtle stock composition in fishery bycatch: a case study in the Mediterranean

Based on an extensive sampling regime from both nesting populations and bycatch, frequency analyses of mitochondrial (mt) DNA control region haplotypes in the Mediterranean were used to assess the genetic structure and stock composition of the loggerhead sea turtle, Caretta caretta, in different marine fisheries. The analyses show the following. (i) In drifting longline fisheries working in Mediterranean pelagic habitats 53–55% of turtles caught originated from the Mediterranean stock; (ii) In bottom-trawl fisheries all turtle bycatch is derived from this regional stock; (iii) This regional stock contribution to fishery bycatch suggests that the population size of the Mediterranean loggerhead nesting population is significantly larger than previously thought. This is consistent with a recent holistic estimate based on the discovery of a large rookery in Libya. (iv) Present impact of fishery-related mortality on the Mediterranean nesting population is probably incompatible with its long-term conservation. Sea turtle conservation regulations are urgently needed for the Mediterranean fisheries. (v) The significant divergence of mtDNA haplotype frequencies of the Turkish loggerhead colonies define this nesting population as a particularly important management unit. Large immature and adult stages from this management unit seem to be harvested predominantly by Egyptian fisheries. (vi) Combined with other data, our findings suggest that all the nesting populations in the Mediterranean should be considered as management units sharing immature pelagic habitats throughout the Mediterranean (and possibly the eastern Atlantic), with distinct and more localized benthic feeding habitats in the eastern basin used by large immatures and adults. (vii) Between the strict oceanic pelagic and the benthic stages, immature turtles appear to live through an intermediate neritic stage, in which they switch between pelagic and benthic foods.     

Evaluation of the role of State transitions in determining the efficiency of light utilisation for CO2 assimilation in leaves

Wheat leaves were exposed to light treatments that excite preferentially Photosystem I (PS I) or Photosystem II (PS II) and induce State 1 or State 2, respectively. Simultaneous measurements of CO₂ assimilation, chlorophyll fluorescence and absorbance at 820 nm were used to estimate the quantum efficiencies of CO₂ assimilation and PS II and PS I photochemistry during State transitions. State transitions were found to be associated with changes in the efficiency with which an absorbed photon is transferred to an open PS II reaction centre, but did not correlate with changes in the quantum efficiencies of PS II photochemistry or CO₂ assimilation. Studies of the phosphorylation status of the light harvesting chlorophyll protein complex associated with PS II (LHC II) in wheat leaves and using chlorina mutants of barley which are deficient in this complex demonstrate that the changes in the effective antennae size of Photosystem II occurring during State transitions require LHC II and correlate with the phosphorylation status of LHC II. However, such correlations were not found in maize leaves. It is concluded that State transitions in C₃ leaves are associated with phosphorylation-induced modifications of the PS II antennae, but these changes do not serve to optimise the use of light absorbed by the leaf for CO₂ assimilation.Abbreviations Fm, Fo, Fv maximal, minimal and variable fluorescence yields - Fm, Fv maximal and variable fluorescence yields in a light adapted state - LHC II light harvesting chlorophyll a/b protein complex associated with PS II - q_P photochemical quenching - A₈₂₀ light-induced absorbance change at 820 nm - _{PS I}, _{PS II} relative quantum efficiencies of PS I and PS II photochemistry - _{CO 2} quantum yield of CO₂ assimilation     

Interactions between a Trawl fishery and spatial closures for biodiversity conservation in the Great Barrier Reef World Heritage Area, Australia

Background

The Queensland East Coast Otter Trawl Fishery (ECOTF) for penaeid shrimp fishes within Australia''s Great Barrier Reef World Heritage Area (GBRWHA). The past decade has seen the implementation of conservation and fisheries management strategies to reduce the impact of the ECOTF on the seabed and improve biodiversity conservation. New information from electronic vessel location monitoring systems (VMS) provides an opportunity to review the interactions between the ECOTF and spatial closures for biodiversity conservation.

Methodology and Results

We used fishing metrics and spatial information on the distribution of closures and modelled VMS data in a geographical information system (GIS) to assess change in effort of the trawl fishery from 2001–2009 and to quantify the exposure of 70 reef, non-reef and deep water bioregions to trawl fishing. The number of trawlers and the number of days fished almost halved between 2001 and 2009 and new spatial closures introduced in 2004 reduced the area zoned available for trawl fishing by 33%. However, we found that there was only a relatively minor change in the spatial footprint of the fishery as a result of new spatial closures. Non-reef bioregions benefited the most from new spatial closures followed by deep and reef bioregions.

Conclusions/Significance

Although the catch of non target species remains an issue of concern for fisheries management, the small spatial footprint of the ECOTF relative to the size of the GBRWHA means that the impact on benthic habitats is likely to be negligible. The decline in effort as a result of fishing industry structural adjustment, increasing variable costs and business decisions of fishers is likely to continue a trend to fish only in the most productive areas. This will provide protection for most benthic habitats without any further legislative or management intervention.     

Effects of market price on the dynamics of a spatial fishery model: Over-exploited fishery/traditional fishery

We present a dynamical model of a spatial fishery describing the time evolution of the fish stock, the fishing effort and the market price of the resource. The market price is fixed by the gap between the supply and the demand. Assuming two time scales, we use “aggregation of variables methods” in order to derive a reduced model governing fish density and fishing effort at a slow time scale. The bifurcation analysis of the reduced model is performed. According to parameters values, three main cases can occur: (i) a stable fishery free equilibrium, (ii) a stable persistent fishery equilibrium and (iii) coexistence of three strictly positive equilibria, two of them being stable separated by a saddle. In this last case, a stable equilibrium corresponds to a traditional fishery with large fish stock, small fishing effort and small market price. The second stable one corresponds to over-exploitation of the resource with small fish stock, large fishing effort and large market price.     

Design and test of a grid to reduce bycatch in the longfin inshore squid (Doryteuthis pealeii) trawl fishery

A species separation grid was tested for a squid trawl to reduce finfish bycatch in the Nantucket Sound longfin inshore squid (Doryteuthis pealeii) fishery in southern New England, USA. The experimental trawl with a grid significantly reduces bycatch of summer flounder (Paralichthys dentatus) (76.4%, p < .001), black sea bass (Centropristis striata) (71.7%, p = .001), smooth dogfish (Mustelus canis) (86.0%, p < .001), and total bycatch (69.2%, p < .001) when compared to a conventional trawl. The catch rate of scup (Stenotomus chrysops) is 40.2% less than in the experimental trawl, but this difference is not statistically significant (p = .258). However, the experimental trawl also reduces targeted squid capture by 47.5% (p < .001), which is commercially unacceptable. Length analysis indicates no size effect on the retention for squid between the trawl with a grid (experimental) and the one without a grid (control), but the experimental trawl significantly reduces larger scup (>27 cm FL) and larger black sea bass (>37 cm TL), and all summer flounder size‐classes. Therefore, this grid design may not be a suitable bycatch reduction device for the Nantucket Sound squid trawl fishery, and further work is needed to understand squid behavior within a trawl to develop a successful bycatch reduction strategy for the New England longfin inshore squid fishery.     

The stabilizability of a controlled system describing the dynamics of a fishery

This work presents two stock-effort dynamical models describing the evolution of a fish population growing and moving between two fishing zones, on which it is harvested by a fishing fleet, distributed on the two zones. The first model corresponds to the case of constant displacement rates of the fishing effort, and the second one to fish stock-dependent displacement rates. In equations of the fishing efforts, a control function is introduced as the proportion of the revenue to be invested, for each fleet. The stabilizability analysis of the aggregated model, in the neighborhood of the equilibrium point, enables the determination of a Lyapunov function, which ensures the existence of a stabilizing discontinuous feedback for this model. This enables us to control the system and to lead, in an uniform way, any solution of this system towards this desired equilibrium point.     

The role of shape in determining molecular motions

We examined the role of molecular shape in determining the patterns of low-frequency deformational motions of biological macromolecules. The low-frequency subspace of eigenvectors in normal mode analysis was found to be robustly similar upon randomization of the Hessian matrix elements as long as the structure of the matrix is maintained, which indicates that the global shape of molecules plays a more dominant role in determining the highly anisotropic low-frequency motions than the absolute values of stiffness and directionality of local interactions. The results provided a quantitative foundation for the validity of elastic normal mode analysis.     

微生物能源的转化效率和经济可行性研究

生物质能源在中国,尤其是农村地区是一种十分重要的能源,然而,目前和将来油气资源的缺乏不仅影响国民经济的发展,而且危及能源安全。估算了4种最具应用前景的微生物能源包括微生物柴油,生物乙醇,氢气和沼气,并讨论了经济可行性及使用前景。其诣在帮助发展将生物质转化为燃料的技术,而此项技术对中国经济的发展具有重要的意义。     

Ecology and role of zooplankton in the fishery of Lake Naivasha

Taxonomic composition, distribution, community structure and seasonality of Lake Naivasha zooplankton between 1978 and 1980 are described. The ecological status of the zooplankton in relation to prevailing ecological factors and the lakes fishery are discussed. Species composition of the zooplankton community in Lake Naivasha has been remarkably constant since first observations between 1929 and 1931. The community structure and distribution of the zooplankton in the lake varied little from July 1978 to July 1980, however, there was evidence of species succession among the larger zooplankters, especially the cladocerans. In the littoral area zooplankton contribute significantly to the food and production of juvenile fish. There is an absence of fish zooplanktivores in the limnetic area of the lake. Consequently the limnetic zooplankton is not utilised by higher trophic levels.     

The role of the individual in social dynamics

The mathematical theories of social dynamics developed previously are deterministic and leave no room for the effects of single “exceptional” individuals. They all, however, lead to the existence of instability points and threshold phenomena. It is shown that in the neighborhood of such instability points, exceptional individuals, who appear rarely, can appreciablyadvance orretard the moment at which the instability is reached and at which a sudden change in the society occurs. Such individuals, however, do not eitherprevent orcause the instability, or the change, to occur. The indeterminacy introduced by “rare” individuals into the time course of social change is inversely proportional to the rate of social change.