Variation of lupin protein degradation in ruminants studied in situ and using chemical protein fractions

The main objective of this study was to evaluate the variability in in situ CP degradation characteristics of 15 batches lupin grains from nine genotypes in a standardised approach. This study also investigated whether differences in CP degradation can be described by protein fractionation using the Cornell Net Carbohydrate and Protein System (CNCPS) and also whether thermal processing of lupins has an effect on CP degradation in the rumen and analysed protein fractions. The rising political and consumer demand for milk products from dairy production systems based on domestic protein sources and the wide range of lupin types and varieties that can be chosen as protein feed in dairy nutrition requires research to determine the variability in CP degradation characteristics in the rumen. For CP degradation measurements, ground grains were incubated in the rumen of three lactating Jersey cows fitted with a ruminal cannula for different times from 2 to 48 h, and the washing loss of non-incubated samples was also measured. Protein fractions were analysed according to CNCPS and used for the estimation of ruminally degraded protein. In situ CP degradation parameters varied widely between untreated samples. The mean value for the washout fraction was 29.3% (from 16.4% to 43.6%). The potentially degradable fraction averaged 70.5% (from 55.6% to 83.7%), hence maximal degradation of CP was close to completeness. Mean degradation rate was 16.6%/h (from 12.6 to 21.0%/h). Variation in estimated parameters led to variation in the effective degradation (ED) averaging 76.6% (from 67.3% to 83.0%) when calculated assuming a ruminal outflow of 8%/h. Thermal treatment of lupins induced changes in degradation characteristics, primarily by lowering degradation rates, and also led to a significant reduction in ED. The ED calculated from analysed protein fractions averaged 10 percentage points higher than ED calculated from in situ parameters for untreated grains. The ED based on protein fractionation was also reduced by heat treatment, but the correlation with in situ based ED was poor. It can be concluded that the variation in ED indicates a potential to increase the amount of rumen undegraded protein without additional chemical or physical treatment and the effect of genetic factors and agronomic practices on ED of lupin grains should be investigated in systematic studies in the future.     

Milk yield and milk composition responses to change in predicted net energy and metabolizable protein: a meta-analysis

Using a meta-analysis of literature data, this study aimed to quantify the dry matter (DM) intake response to changes in diet composition, and milk responses (yield, milk component yields and milk composition) to changes in dietary net energy for lactation (NE_L) and metabolizable protein (MP) in dairy cows. From all studies included in the database, 282 experiments (825 treatments) with experimentally induced changes in either NE_L or MP content were kept for this analysis. These treatments covered a wide range of diet characteristics and therefore a large part of the plausible NE_L and MP contents and supplies that can be expected in practical situations. The average MP and NE_L contents were, respectively (mean±SD), 97±12 g/kg DM and 6.71±0.42 MJ/kg DM. On a daily supply basis, there were high between-experiment correlations for MP and NE_L above maintenance. Therefore, supplies of MP and NE_L above maintenance were, respectively, centred on MP supply for which MP efficiency into milk protein is 0.67, and NE_L above maintenance supply for which the ratio of NE_L milk/NE_L above maintenance is 1.00 (centred variables were called MP₆₇ and NE_L100). The majority of the selected studies used groups of multiparous Holstein-Friesian cows in mid lactation, milked twice a day. Using a mixed model, between- and within-experiment variation was split to estimate DM intake and milk responses. The use of NE_L100 and MP₆₇ supplies substantially improved the accuracy of the prediction of milk yield and milk component yields responses with, on average, a 27% lower root mean square error (RMSE) relative to using dietary NE_L and MP contents as predictors. For milk composition (g/kg), the average RMSE was only 3% lower on a supply basis compared with a concentration basis. Effects of NE_L and MP supplies on milk yield and milk component yields responses were additive. Increasing NE_L supply increases energy partitioning towards body reserve, whereas increasing MP supply increases the partition of energy towards milk. On a nitrogen basis, the marginal efficiency decreases with increasing MP supply from 0.34 at MP₆₇=−400 g/day to 0.07 at MP₆₇=300 g/day. This difference in MP₆₇ supply, assuming reference energy level of NE_L100=0, equates to a global nitrogen efficiency decrease from 0.82 to 0.58. The equations accurately describe DM intake response to change in dietary contents and milk responses to change in dietary supply and content of NE_L and MP across a wide range of dietary compositions.     

Review: Optimizing ruminant conversion of feed protein to human food protein

Ruminant livestock have the ability to produce high-quality human food from feedstuffs of little or no value for humans. Balanced essential amino acid composition of meat and milk from ruminants makes those protein sources valuable adjuncts to human diets. It is anticipated that there will be increasing demand for ruminant proteins in the future. Increasing productivity per animal dilutes out the nutritional and environmental costs of maintenance and rearing dairy animals up to production. A number of nutritional strategies improve production per animal such as ration balancing in smallholder operations and small grain supplements to ruminants fed high-forage diets. Greenhouse gas emission intensity is reduced by increased productivity per animal; recent research has developed at least one effective inhibitor of methane production in the rumen. There is widespread over-feeding of protein to dairy cattle; milk and component yields can be maintained, and sometimes even increased, at lower protein intake. Group feeding dairy cows according to production and feeding diets higher in rumen-undegraded protein can improve milk and protein yield. Supplementing rumen-protected essential amino acids will also improve N efficiency in some cases. Better N utilization reduces urinary N, which is the most environmentally unstable form of excretory N. Employing nutritional models to more accurately meet animal requirements improves nutrient efficiency. Although smallholder enterprises, which are concentrated in tropical and semi-tropical regions of developing countries, are subject to different economic pressures, nutritional biology is similar at all production levels. Rather than milk volume, nutritional strategies should maximize milk component yield, which is proportional to market value as well as food value when milk nutrients are consumed directly by farmers and their families. Moving away from Holsteins toward smaller breeds such as Jerseys, Holstein-Jersey crosses or locally adapted breeds (e.g. Vechur) would also reduce lactose production and improve metabolic, environmental and economic efficiencies. Forages containing condensed tannins or polyphenol oxidase enzymes have reduced rumen protein degradation; ruminants capture this protein more efficiently for meat and milk. Although these forages generally have lower yields and persistence, genetic modification would allow insertion of these traits into more widely cultivated forages. Ruminants will retain their niches because of their ability to produce valuable human food from low value feedstuffs. Employing these emerging strategies will allow improved productive efficiency of ruminants in both developing and developed countries.     

An iterative self-refining and self-evaluating approach for protein model quality estimation

Evaluating or predicting the quality of protein models (i.e., predicted protein tertiary structures) without knowing their native structures is important for selecting and appropriately using protein models. We describe an iterative approach that improves the performances of protein Model Quality Assurance Programs (MQAPs). Given the initial quality scores of a list of models assigned by a MQAP, the method iteratively refines the scores until the ranking of the models does not change. We applied the method to the model quality assessment data generated by 30 MQAPs during the Eighth Critical Assessment of Techniques for Protein Structure Prediction. To various degrees, our method increased the average correlation between predicted and real quality scores of 25 out of 30 MQAPs and reduced the average loss (i.e., the difference between the top ranked model and the best model) for 28 MQAPs. Particularly, for MQAPs with low average correlations (<0.4), the correlation can be increased by several times. Similar experiments conducted on the CASP9 MQAPs also demonstrated the effectiveness of the method. Our method is a hybrid method that combines the original method of a MQAP and the pair-wise comparison clustering method. It can achieve a high accuracy similar to a full pair-wise clustering method, but with much less computation time when evaluating hundreds of models. Furthermore, without knowing native structures, the iterative refining method can evaluate the performance of a MQAP by analyzing its model quality predictions.     

Effect of the inclusion of food waste in pig diets on growth performance, carcass and meat quality

Food waste from fish and fruit shops was used as an alternative to the grain in grower-finisher pig diets. Two diets were formulated on an iso-nutrient basis (14 MJ digestible energy per kg, 160 g crude protein per kg on a dry-matter basis) to contain 0 g of food waste per kg in the control diet and 50 g of fish-shop waste per kg and 120 g of fruit-shop waste per kg in the experimental diet. In the study, 28 pigs per diet (seven pigs per pen) were fed ad libitum from 20 kg to 100 kg, then, they were slaughtered and the carcass characteristics determined. The inclusion of food waste in the diet had no significant effect (P>0.05) on average daily feed intake (2.12 v. 2.20 kg/day), average daily gain (0.74 v. 0.78 kg/day), or gain/feed (0.35 v. 0.35 kg per kg). In the case of the experimental diet, backfat thickness was significantly lower (18.0 v. 21.3 mm, P < 0.01). The results of the taste test indicated that the meat from food waste-fed pigs had acceptable organoleptic quality although a very light aroma to fish was observed in the bacon (P < 0.01).It was concluded that food waste from the fish and fruit shops could be included in grower-finisher pig diets without any detrimental effect on growth performance and only minor effects on carcass characteristics and meat quality.     

Effects of protein sources on concentrations of hydrogen sulphide in the rumen headspace gas of dairy cows

Two Latin square design experiments investigated the relationship between hydrogen sulphide concentration in the rumen headspace gas of dairy cows and the early stages of protein degradation in the rumen. In Expt 1, three protein sources differing in rumen N (nitrogen) degradability (maize gluten feed (MGF); sunflower meal (SFM); and soyabean meal (SBM)) were used, whereas in Expt 2 four different batches of the same feed (MGF) differing in colour (CIE L*, a*, b* (CIELAB) scale) were used. After allowing the concentration of hydrogen sulphide in rumen gas to decline close to zero, a fixed amount of protein sources was offered to cows and the concentrations of hydrogen sulphide were recorded in rumen headspace gas at 30-min intervals. In Expt 1, the concentration of hydrogen sulphide showed considerable variation between protein sources, with MGF having the highest concentration followed by SFM and SBM resulting in very low concentrations. The N wash losses (zero time measurements with nylon bags) ranked the feeds in the same way, from MGF (highest; 61%) to SBM (lowest; 26%). There were marked differences in the degradation of cystine and methionine between protein sources, although the degradation of cystine was always higher than for methionine. MGF (Expt 2) led to increased concentrations of hydrogen sulphide, with peak concentrations achieved between 1 and 2 h after feeding. The concentrations of hydrogen sulphide were higher for MGF1, intermediate for MGF2 and lower for MGF3 and MGF4, agreeing with colour scale. Differences in the early stages of dietary sulphur degradation corresponded with differences in hydrogen sulphide concentrations in rumen gas. The results suggest that hydrogen sulphide concentrations in the rumen headspace gas could be useful to evaluate nutritional parameters not measured by the in sacco technique, contributing to a better understanding of the response of dairy cows to different protein supplements.     

Acid lactic lactobacilli as a biotechnological toll to improve food quality and human health

The genus Lactobacillus has been widely used in food industry as starter or adjunct culture due to its probiotic features. Its biotechnological features improve the spectrum of uses of lactobacilli, which can affect its applicability directly. In this sense, this literature review gathers information and discusses the biotechnological potential of technological/probiotic lactobacilli aiming to improve food quality and human health. The primary and secondary metabolism generates specific substances, such as organic acids, carbon dioxide, hydrogen peroxide, diacetyl, fatty acids, and bacteriocins, which are determinant due to their probiotic potential, antimicrobial activity, and the development of new food flavors. In order to become industrially and commercially attractive, it is necessary develop a large-scale process with lower production costs.     

Temperature and the effects of elemental food quality on Daphnia

1. We examined the responses of two species of Daphnia to changes in food phosphorus (P) content, with animals reared at three different water temperatures. Specifically, we measured mass‐specific growth rate (MSGR), body P content and respiration rate of Daphnia magna and Daphnia pulex acclimatised to 10, 17.5 and 25 °C and fed food carbon : phosphorus (C : P) ratios of either 150 or 500. 2. The responses of these three physiological variables to temperature–food quality interactions were species‐specific. There was a significant interactive effect of temperature and food quality on D. magna, as the greatest proportional effect of food quality on growth was observed at 10 °C and reductions in body P because of low food P content were relatively greater at 25 °C. These effects may reflect the temperature dependence of mechanisms that reduce elemental constraints associated with food quality in D. magna. By contrast, there were no interactive effects between food quality and temperature on MSGR, body P or mass‐specific respiration of D. pulex. 3. It thus appears that temperature can alter food quality effects on Daphnia but the nature of these alterations depends upon the daphniid species and its thermal adaptability. Significant temperature–food quality interactions will complicate efforts to understand zooplankton nutrition in nature and warrant future consideration.     

Upgrading plant amino acids through cattle to improve the nutritional value for humans: effects of different production systems

Efficiency in animal protein production can be defined in different ways, for example the amount of human-digestible essential amino acids (HDEAA) in the feed ration relative to the amount of HDEAA in the animal products. Cattle production systems are characterised by great diversity and a wide variety of feeds and feed ration compositions, due to ruminants’ ability to digest fibrous materials inedible to humans such as roughage and by-products from the food and biofuel industries. This study examined the upgrading of protein quality through cattle by determining the quantity of HDEAA in feeds and animal products and comparing different milk and beef production systems. Four different systems for milk and beef production were designed, a reference production system for milk and beef representing typical Swedish production systems today and three alternative improved systems: (i) intensive cattle production based on maize silage, (ii) intensive systems based on food industry by-products for dairy cows and high-quality forage for beef cattle, and (iii) extensive systems based on forage with only small amounts of concentrate. In all four production systems, the quantity of HDEAA in the products (milk and meat) generally exceeded the quantity of HDEAA in the feeds. The intensive production models for beef calves generally resulted in output of the same magnitude as input for most HDEAA. However, in beef production based on calves from dairy cows, the intensive rearing systems resulted in lower output than input of HDEAA. For the extensive models, the amounts of HDEAA in meat were of the same magnitude as the amounts in the feeds. The extensive models with beef calves from suckler cows resulted in higher output in meat than input in feeds for all HDEAA. It was concluded that feeding cattle plants for production of milk and meat, instead of using the plants directly as human food, generally results in an upgrading of both the quantity and quality of protein, especially when extensive, forage-based production models are used. The results imply that the key to efficiency is the utilisation of human-inedible protein by cattle and justifies their contribution to food production, especially in regions where grasslands and/or forage production has comparative benefits over plant food production. By fine-tuning estimation of the efficiency of conversion from human-edible protein to HDEAA, comparisons of different sources of protein production may be more complete and the magnitude of amino acid upgrading in plants through cattle more obvious.     

Ecological diversity of edible insects and their potential contribution to household food security in Haut‐Katanga Province,Democratic Republic of Congo

Democratic Republic of the Congo (DR Congo) has a wide diversity of edible insects making it one of the most important biodiversity hot spots in Africa. The aim of this study was to give the first insight into the food plant range, seasonal availability of edible insects, community preference and willingness to consume them. The study revealed a list of eleven edible insect species belonging to four families. Twenty‐six plant species were recorded as food plants of nine edible caterpillar species. Seasonal availability of these insects coincided with the rainy season and was strongly linked to relatively high level of consumption. The caterpillars Elaphrodes lactea Gaede, Lobobunaea saturnus Fabricius and Cinabra hyperbius (Westwood) as well as the termites Macrotermes falciger Gerstäcker were the most dominant species of edible insects preferred and consumed among the different communities. Our study demonstrates that entomophagy is a common practice among the ethnic populations with married, tertiary and university‐level individuals recording significantly higher consumption of edible caterpillars. Populations between the ages of 18 and 45 years as well as the Bemba tribe were also more actively involved in entomophagy. Further research would be necessary to exploit edible insect biodiversity and ethno‐entomophagy and initiate actions for food plant conservation in DR Congo.     

Microbial transglutaminase: An overview of recent applications in food and packaging

Abstract

The glue of proteins, microbial transglutaminase (MTG) has been adopted in the food processing industries for its broad enzymatic action. Microorganisms such as Streptoverticillium and Streptomyces are the major sources, to decrease the cost of manufacturing animal origin transglutaminase. The net % increase of its demands in the food processing is estimated at 21.9% per year. In fact, MTG is consumed by most food industries, spanning the meat, dairy, seafood and fish, plant proteins, edible film preparation and more. It used to improve gelation and change foaming, emulsification, viscosity, consistency and water-holding capacity properties. This paper presents an overview of the literature that described and explored the recent microbial origins, production media and applications of microbial transglutaminase.     

Niche overlap between herbivorous cladocerans; the role of food quality and habitat homogeneity

In spite of resource limitation, five abundant species of herbivorous metazoan zooplankton in a humic lake exhibited extensive niche overlap both with regard to seasonal and spatial occurrence, time of reproductive maxima, juvenile release and food choice. Their coexistence could not be explained by modifying predation, environmental oscillations or recolonization.Laboratory bottle experiments indicated only weak interspecific interactions between the three tested species at low food levels, but negative interactions were induced at elevated food levels. Bosmina appeared as competitively inferior during enrichment with cultured algae, but as the superior species during starvation. At low nutrient levels, all species coexisted for several generations with low reproduction, in accordance with the lake situation. It was concluded that the observed niche overlaps would be promoted if; 1) Intraspecific competition is more important than interspecific competition. 2) All species are co-adapted to low nutrient availability, food is quantitatively in surplus, but qualitatively deficient (mainly recycled detritus). During such conditions, no species would be capable of obtaining a population increase until extinction of the other species. This situation may be typical of oligotrophic humic lakes, and of other localities with low predation pressure and high inputs of allochthonous particulate carbon.     

An ecosystem-based approach to evaluate the ecological quality of Mediterranean undersea caves

A theoretical model of structure and functioning was constructed for the Mediterranean undersea cave ecosystem. This model integrates almost all representative components of the cave ecosystem and gives an idea of their faunal compositions, characteristics and related interactions.This model constitutes the basis of the Ecosystem-Based Quality Index (EBQI) of the European Union's Marine Strategy Framework Directive, which aims at evaluating the ecological quality of an ecosystem. It is based on four crucial complementary elements: (i) each component was weighted in accordance with its importance in determining the structure and functioning of the cave ecosystem; (ii) a suite of relevant parameters were defined to assess the ecological state of each component of the cave ecosystem; (iii) these parameters were aggregated into one relevant index, the Cave EBQI (CavEBQI), to summarize the quality evaluation for each cave site; (iv) each value of ecological state is accompanied by a Confidence Index as a measure of its reliability.The CavEBQI was used on 22 Mediterranean undersea caves of France and Italy. Disparities of ecological quality were found among caves but most of them ranged from moderate to high ecological quality. For some caves, no conclusion can be drawn when our method predicts a poor reliability of the evaluation of their ecological quality.This ecosystem-based evaluation of the quality of undersea caves seems to be a powerful tool, with the advantage of being based on almost all its components, rather than just on a few species. It is accompanied by a measure of its reliability, hence it provides a reliable idea of the ecological state of the entire ecosystem at each cave site. Monitoring the ecological state of caves and the effects of disturbances over large geographic and temporal scales is made possible with CavEBQI. Applying the same method to other ecosystems, can provide an integrated view of a marine region, which is essential when addressing questions about protection, conservation and restoration.     

A novel approach to the recognition of protein architecture from sequence using Fourier analysis and neural networks

A novel method is presented for the prediction of protein architecture from sequence using neural networks. The method involves the preprocessing of protein sequence data by numerically encoding it and then applying a Fourier transform. The encoded and transformed data are then used to train a neural network to recognize a number of different protein architectures. The method proved significantly better than comparable alternative strategies such as percentage dipeptide frequency, but is still limited by the size of the data set and the input demands of a neural network. Its main potential is as a complement to existing fold recognition techniques, with its ability to identify global symmetries within protein structures its greatest strength.     

Effects of food quality on life history of the rotifer Brachionus calyciflorus Pallas

1. Herbivorous zooplankton face considerable temporal and spatial variation in food quality, to which they respond by adapting their life histories. Zooplankton may even take up mineral nutrients directly, and use these to counter the effects of algal nutrient limitation (mineral compensation). This study examined the life history of the rotifer Brachionus calyciflorus fed phosphorus‐, and nitrogen‐limited Scenedesmus obliquus (Chlorophyta), and investigated whether B. calyciflorus was capable of mineral compensation. 2. Both phosphorus‐ and nitrogen‐limited algae gave similar life history responses: somatic growth and reproduction were reduced, whereas lifespan remained unaffected. 3. No evidence was found for mineral compensation in B. calyciflorus in relation to detrimental life history effects, so mineral compensation does not seem to be relevant for this species under field conditions. 4. The similarity in life history responses of B. calyciflorus and the low levels of ω‐3 PUFAs in both phosphorus‐ and nitrogen‐depleted algae suggest that ω‐3 PUFAs were limiting to B. calyciflorus, although other (bio)chemicals or mineral nutrients may also have been important. 5. No trade‐off was observed between life span and reproduction during algal nutrient limitation. Reduced population growth rates of B. calyciflorus were caused by shorter reproductive periods.     

Advances of organic products over conventional productions with respect to nutritional quality and food security

Organic products are derived from the organic production system, following organic agricultural cultivation standards, and processing schedules must be identified by an independent certificate authority. The main characteristic of the organic agricultural production system is that all artificial synthetic materials such as pesticides, fertilizers, growth regulators, feed additives, and gene engineering products are not allowed to use. However, there is much debate on organic production quality and health safety issues in academic circles. Some people believe that there is a “Three Cannot” problem with organic production, that is, organic products “cannot be distinguished, cannot be tasted and cannot be measured” compared to common ones. To objectively reflect the differences in nutritional quality and food safety between organic and conventional products, we combined extensive literatures with our research data and have reported some advances in the sensory quality, nutritional value, and safety of the two types of products. The results showed that organic products tasted better; the percentage of leanness was higher, and the products tasted much tender. The dry matter content of most organic crops was about 7–20% higher than that of conventional foods, and enriched vitamin C, anthocyanins, isoflavones, carotenoids, and other phenolic compounds and more elements such as P, Fe, and Mg and trace elements such as Zn, Cu, and Cr were verified in organic crops. Organic animal products contain more beneficial polyunsaturated fatty acids; the nitrate content in organic fruits and vegetables was 20–50% of that in normal fruits. No pesticide residues and less heavy metals were found in the organic products. Our investigation showed that there were obvious differences in quality and safety between the products that originated from organic agriculture systems and conventional alternatives. This conclusion can provide an important theoretical basis for the healthy development of the organic industry.     

An ecological approach to assessing the epidemiology of antimicrobial resistance in animal and human populations

We examined long-term surveillance data on antimicrobial resistance (AMR) in Salmonella Typhimurium DT104 (DT104) isolates from concurrently sampled and sympatric human and animal populations in Scotland. Using novel ecological and epidemiological approaches to examine diversity, and phenotypic and temporal relatedness of the resistance profiles, we assessed the more probable source of resistance of these two populations. The ecological diversity of AMR phenotypes was significantly greater in human isolates than in animal isolates, at the resolution of both sample and population. Of 5200 isolates, there were 65 resistance phenotypes, 13 unique to animals, 30 unique to humans and 22 were common to both. Of these 22, 11 were identified first in the human isolates, whereas only five were identified first in the animal isolates. We conclude that, while ecologically connected, animals and humans have distinguishable DT104 communities, differing in prevalence, linkage and diversity. Furthermore, we infer that the sympatric animal population is unlikely to be the major source of resistance diversity for humans. This suggests that current policy emphasis on restricting antimicrobial use in domestic animals may be overly simplistic. While these conclusions pertain to DT104 in Scotland, this approach could be applied to AMR in other bacteria-host ecosystems.     

On the influence of food quality in consumer–resource interactions

While nutrients are an important regulating factor in food webs, no theoretical studies have examined limits to consumer growth imposed by nutrient concentrations (i.e. food quality) of their prey. Empirical studies have suggested that nutrients may play a role in limiting assimilation efficiencies of herbivores. Using a simple food chain model, I find that prey nutrient concentration does directly influence the growth rate of consumers and potentially increase the stability of consumer–resource interactions. This suggests that the strength of trophic cascades and the relative importance of top–down versus bottom–up control in food webs is significantly influenced by nutrient availability in food resources of consumers. Additionally, the results imply that increases in resource input may cause a change in which resource is limiting and thereby negate any potential "paradox of enrichment".