Dating the origin of the major lineages of Branchiopoda

Despite the well-established phylogeny and good fossil record of branchiopods, a consistent macro-evolutionary timescale for the group remains elusive. This study focuses on the early branchiopod divergence dates where fossil record is extremely fragmentary or missing. On the basis of a large genomic dataset and carefully evaluated fossil calibration points, we assess the quality of the branchiopod fossil record by calibrating the tree against well-established first occurrences, providing paleontological estimates of divergence times and completeness of their fossil record. The maximum age constraints were set using a quantitative approach of Marshall (2008). We tested the alternative placements of Yicaris and Wujicaris in the referred arthropod tree via the likelihood checkpoints method. Divergence dates were calculated using Bayesian relaxed molecular clock and penalized likelihood methods. Our results show that the stem group of Branchiopoda is rooted in the late Neoproterozoic (563 ± 7 Ma); the crown-Branchiopoda diverged during middle Cambrian to Early Ordovician (478–512 Ma), likely representing the origin of the freshwater biota; the Phyllopoda clade diverged during Ordovician (448–480 Ma) and Diplostraca during Late Ordovician to early Silurian (430–457 Ma). By evaluating the congruence between the observed times of appearance of clade in the fossil record and the results derived from molecular data, we found that the uncorrelated rate model gave more congruent results for shallower divergence events whereas the auto-correlated rate model gives more congruent results for deeper events.     

Where's the glass? Biomarkers,molecular clocks,and microRNAs suggest a 200‐Myr missing Precambrian fossil record of siliceous sponge spicules

The earliest evidence for animal life comes from the fossil record of 24-isopropylcholestane, a sterane found in Cryogenian deposits, and whose precursors are found in modern demosponges, but not choanoflagellates, calcareans, hexactinellids, or eumetazoans. However, many modern demosponges are also characterized by the presence of siliceous spicules, and there are no convincing demosponge spicules in strata older than the Cambrian. This temporal disparity highlights a problem with our understanding of the Precambrian fossil record – either these supposed demosponge-specific biomarkers were derived from the sterols of some other organism and are simply retained in modern demosponges, or spicules do not primitively characterize crown-group demosponges. Resolving this issue requires resolving the phylogenetic placement of another group of sponges, the hexactinellids, which not only make a spicule thought to be homologous to the spicules of demosponges, but also make their first appearance near the Precambrian/Cambrian boundary. Using two independent analytical approaches and data sets – traditional molecular phylogenetic analyses and the presence or absence of specific microRNA genes – we show that demosponges are monophyletic, and that hexactinellids are their sister group (together forming the Silicea). Thus, spicules must have evolved before the last common ancestor of all living siliceans, suggesting the presence of a significant gap in the silicean spicule fossil record. Molecular divergence estimates date the origin of this last common ancestor well within the Cryogenian, consistent with the biomarker record, and strongly suggests that siliceous spicules were present during the Precambrian but were not preserved.     

Biogeographic relationships of African carnivoran faunas, 7–1.2 Ma

This study analyses the carnivore component of African fossil faunas from three time slices: 7–5 Ma, 4–3 Ma, and 2.5–1.2 Ma, using cluster analysis and principal coordinate analysis (PCO) of presence/absence data on genera. The faunas mostly cluster by time slice, with the exception of Laetoli (Tanzania) and Ahl al Oughlam (Morocco), which differ from all other faunas. The separation during the Late Miocene of a Chado–Libyan bioprovince from the remainder of Africa is supported. No such distinctions are present in the other time slices. Taxonomic distance is not generally correlated with geographic distance, though if Langebaanweg is removed from the 7–5 Ma time slice, the correlation at that time is significant. Comparison of these paleontological results with phylogeographic studies of modern species leads to some general comments on the analytic power of the fossil record with regard to interregional migrations.     

40Ar/39Ar geochronology and paleomagnetic stratigraphy of the Lukeino and lower Chemeron Formations at Tabarin and Kapcheberek,Tugen Hills,Kenya

⁴⁰Ar/³⁹Ar single-crystal laser-fusion dating, K–Ar dating, and paleomagnetic reversal stratigraphy have been used to determine the chronostratigraphy of the Kabarnet Trachyte, Lukeino Formation, Kaparaina Basalt Formation, and Chemeron Formation at the sites of Kapcheberek (BPRP#77) and Tabarin (BPRP#77) in the Tugen Hills, Kenya. The succession ranges in age from 6·56–3·8 Ma. The upper Lukeino Formation at Kapcherberek, including the fauna from the site BPRP#76, was deposited during chron C3r and can be constrained to the interval 5·88–5·72 Ma. The Chemeron Formation at Tabarin includes at the base an ignimbrite and associated basal air-fall tuff with a combined age of 5·31±0·03 Ma. Sedimentary and volcaniclastic rocks of the Chemeron Formation which unconformably overlie the ignimbrite record chrons C3n.2n through C2Ar. The combined⁴⁰Ar/³⁹Ar and paleomagnetic data constrain the age of this sequence to 4·63–3·837 Ma. The age of the Tabarin mandible fragment (KNM-TH 13150) and associated fauna at site BPRP#77 in the Chemeron Formation is 4·48–4·41 Ma, marginally older than similar early hominids from Aramis, Ethiopia. Basin subsidence appears to be defining an overall accumulation rate of about 17 cm/ka over the 2·7 Ma represented at Tabarin and Kapcheberek, despite episodes of rapid accumulation and hiatuses.     

Rhaetian magneto-biostratigraphy from the Southern Alps (Italy): Constraints on Triassic chronology

New Late Triassic–earliest Jurassic magneto-biostratigraphic data have been obtained from three overlapping sections in the Southern Alps, Italy (Costa Imagna, Brumano, Italcementi Quarry), composed of ~ 520 m of shallow-marine carbonates outcropping in stratigraphic continuity. Characteristic magnetic components of presumed depositional age record a sequence of 9 normal and reverse polarity magnetozones (as defined by at least three stratigraphically superposed samples) linked by conodont and palynofloral evidence from this study and the literature to Rhaetian to Triassic–Jurassic boundary age. This represents a significantly larger number of polarity zones than previously recognized in more condensed Rhaetian sections from the literature, and by inference represents more time. These data are placed in a broader Late Triassic temporal framework by means of correlations to published magneto-biostratigraphic data from the Tethyan marine Pizzo Mondello section and the Newark astronomical polarity time scale (APTS). This framework is consistent with a position of the Norian–Rhaetian boundary (as defined at Brumano and Pizzo Mondello by the first appearance of Misikella posthernsteini) within Newark magnetozones E17r–E19r in the ~ 207–210 Ma time interval, in basic agreement with the position originally estimated in the Newark using pollen biostratigraphy (E18 at 208–209 Ma). This framework is also consistent with the position of the Triassic–Jurassic boundary interval (placed at Italcementi Quarry at the acme of Kraeuselisporites reissingeri coincident with a negative carbon isotope excursion) correlative to just above Newark magnetozone E23r and just below the oldest CAMP lavas dated at ~ 202 Ma. Hence, we estimate the duration of the Rhaetian to be ~ 5.5–8.5 Myr (or even longer if the Triassic–Jurassic boundary is instead placed above the negative carbon isotope excursion as at Kuhjoch, which is the designated GSSP for the base of the Hettangian), and encompassing 9 magnetozones. This duration contrasts with a duration of ~ 2 Myr and only ~ 4 magnetozones in several alternative published magneto-biostratigraphic schemes.     

Earliest occurrence of Puma pardoides (Owen, 1846) (Carnivora,Felidae) at the Plio/Pleistocene transition in western Europe: New evidence from the Middle Villafranchian assemblage of Montopoli,Italy

The puma-like cat Puma pardoides (Owen, 1846) is reported from several Eurasian localities dated to the Late Pliocene–Early Pleistocene, but its Italian fossil record is really poor; in fact, the only possible occurrence comprises some fragmentary postcranial material from the Late Villafranchian locality of Pirro Nord (1.6–1.3 Ma). In the present paper, we describe an isolated left upper carnassial of a medium-sized felid belonging to the collection of fossil mammals from Montopoli (Tuscany, Italy), the type locality of the Middle Villafranchian Faunal Unit (∼2.6 Ma). All the morphological and morphometric characters of the tooth are consistent with an attribution to Puma pardoides (Owen, 1846), which comes out as the second felid species from Montopoli together with Acinonyx pardinensis (Croizet et Jobert, 1828) and is, possibly with the specimens from Perrier-Étouaries, the earliest occurrence in western Europe.     

Late Miocene hominoid from Niger

African Late Miocene hominoids are rare, having been reported from six localities in Kenya, Ethiopia and Chad ranging in age from 10.5 to 5.5 Ma. We here report the occurrence of a hominoid in Niger associated with a vertebrate fauna which indicates an age of between 11–5 Ma. The Niger fossil locality is 940 km north of the nearest known extant hominoids, 1000 km west of the nearest recorded fossil hominoid from Chad.     

Late Eocene sea retreat from the Tarim Basin (west China) and concomitant Asian paleoenvironmental change

The Paleogene sediments of the southwest Tarim Basin along the West Kunlun Shan in western China include the remnants of the easternmost extent of a large epicontinental sea. This shallow sea once extended across the Eurasian continent before it retreated westward and eventually separated as the Paratethys Sea. Climate modeling results suggest that this sea retreat is an equally important forcing mechanism as the Tibetan plateau uplift in the aridification of the Asian continental interior and the intensification of the Asian monsoon system. The age and paleogeography of the retreat are poorly constrained, hindering the understanding of its cause and paleoenvironmental impacts. This study reports litho- and biostratigraphic results from two sections recording the last major regression out of the Tarim Basin that is expressed by a regional transition from marine clastics and limestones to continental red-beds. Rich micro- and macrofossil assemblages, including benthic foraminifera, ostracods, bivalves, calcareous nannofossils and organic walled dinoflagellate cysts (dinocysts), indicate a shallow, proximal and marine environment. Strong similarity to assemblages known from Central Asia and Europe confirms that surface–ocean connections extended across Eurasia from the Tarim Basin to the western Tethys during the latest Eocene. Moreover, the recovered fossil associations date the last marine sediments as earliest Priabonian in age (~ 37 Ma; overlap between dinoflagellate Mps Interval Zone and calcareous nannofossil Zone CP 14). The retreat of the sea from the Tarim Basin is time-equivalent with the sea level lowstand at the Bartonian–Priabonian boundary but pre-dates both the Oligocene–Miocene regional uplift of the Pamir mountains and Kunlun Shan and the major eustatic sea-level falls of the Eocene–Oligocene Transition (~ 34 Ma) and mid-Oligocene (~ 30 Ma), which are usually held responsible for the sea retreat. Furthermore, a concomitant and significant aridification step occurs at ~ 36.6 Ma (top of chron C17n.1n) as recorded by regional sedimentary records of the Xining Basin along the northeastern Tibetan Plateau, suggesting that the Tarim Sea served as a significant moisture contributor for the Asian interior.     

Dating an impressive Neotropical radiation: Molecular time estimates for the Sigmodontinae (Rodentia) provide insights into its historical biogeography

With about 400 living species and 82 genera, rodents of the subfamily Sigmodontinae comprise one of the most diverse and more broadly distributed Neotropical mammalian clades. There has been much debate on the origin of the lineage or the lineages of sigmodontines that entered South America, the timing of entrance and different aspects of further diversification within South America. The ages of divergence of the main lineages and the crown age of the subfamily were estimated by using sequences of the interphotoreceptor retinoid binding protein and cytochrome b genes for a dense sigmodontine and muroid sampling. Bayesian inference using three fossil calibration points and a relaxed molecular clock estimated a middle Miocene origin for Sigmodontinae (～12 Ma), with most tribes diversifying throughout the Late Miocene (6.9–9.4 Ma). These estimates together results of analyses of ancestral area reconstructions suggest a distribution for the most recent common ancestor of Sigmodontinae in Central-South America and a South American distribution for the most recent common ancestor of Oryzomyalia.     

Updated chronology for Middle to Late Miocene mammal sites of the Daroca area (Calatayud-Montalbán Basin,Spain)

The micromammal sequence of the Calatayud-Montalbán Basin in Northeast Central Spain is exceptional in terms of its faunal richness and dating accuracy. However, until now, several classical localities with ages close to the Middle to Late Miocene transition have never been directly tied to the Geomagnetic Polarity Time Scale. Here, we present an updated stratigraphic framework for the Daroca area, resulting in new and better-constrained ages for the micro- and macromammal-bearing sites of Toril, Carrilanga, and Pedregueras, and the macromammal site Los Andurriales. Toril is correlated to chron C5Ar.1r with an age of 12.7 Ma. Carrilanga and Los Andurriales are dated at 11.3 Ma, slightly older than the nearby sites Nombrevilla 9–10 (11.2 Ma). The fauna of these latter sites just pre-dates the entry of Hipparion, which is supposed to have its first appearance in Europe also at 11.2 Ma. The age of Pedregueras 2A is estimated at 10.6 Ma, constraining the local Zone H–I boundary and the first Iberian occurrence of Cricetulodon to 10.7 or 10.6 Ma. With an age of 10.4 Ma, the site of Pedregueras 2C is documenting the presence of very rare Murinae in Europe long (ca. half a million years) before their attainment of general dominance.     

Palaeoceanographic redox environments for the lower Cambrian Hetang Formation in South China: Evidence from pyrite framboids,redox sensitive trace elements,and sponge biota occurrence

The lower Cambrian Hetang Formation, a black shale sequence, contains a stone coal (a flammable, organic-rich mudstone) unit. Abundant pyrite framboids occur in this unit, with the average mean sizes falling in a narrow range from 4.6 to 5.4 μm and the maximum diameters being around 10 μm. The size distribution pattern of the pyrite framboids indicates a euxinic depositional environment. The redox-sensitive trace metals of the stone coal samples reveal a large enrichment of Mo (10–180 times),V (4–40 times), U (10–60 times) and Ni (2–20 times) compared to the average upper continental crust value, consistent with an anoxic environment for their deposition. The redox-sensitive element ratios (Th/U, V/(V + Ni), V/Cr) indicate that the depositional environment for the lower part of the stone coal unit was the most anoxic and euxinic. In contrast, a sponge biota including eleven species of demosponges and hexactinellids and two undetermined forms indicate an oxic or dysoxic environment. To reconcile these two facts, we propose that although an anoxic/euxinic environment predominated during the deposition of the lower Cambrian Hetang Formation black shales, occasional currents may also have brought free oxygen to the bottom water column to allow the growth of the sponges on the sea floor.     

New palaeoanthropological research in the Plio-Pleistocene Omo Group,Lower Omo Valley,SNNPR (Southern Nations,Nationalities and People Regions), Ethiopia

Through previous works in the early 1930s by C. Arambourg and in the 1960–1970s by the International Omo Research Expedition (IORE) initiated by F. C. Howell, the Omo Group deposits of the Lower Omo Valley provided decisive data on Plio-Pleistocene environmental change and hominid evolution in eastern Africa. Y. Coppens directed the IORE French component with Arambourg, then alone from 1970 to 1976. After 30-year hiatus, the Omo Group Research Expedition reinitiated field work on Shungura Formation deposits aged between 3 Ma and 2 Ma. In 2006 and 2007, renewed methods led to the collection of more than 600 vertebrate specimens with a particularly precise record of contextual data. These specimens include significant hominid remains dated to 2.5 Ma and slightly older. Changes in faunal distributions were also recorded. Additionally, the Shungura Formation archaeological record is reconsidered. These first results are indicative of future advances in the study of biodiversity evolution and its relationship with global and regional environmental changes.     

Calcareous sponge biomineralization: Ultrastructural and compositional heterogeneity of spicules in Leuconia johnstoni

In contrast to siliceous sponge spicules, the biomineralization in calcareous sponges is poorly understood. In particular, the existence of a differentiated central core in calcareous spicules is still controversial. Here we combine high-spatial resolution analyses, including NanoSIMS, Raman, SXM, AFM, SEM and TEM to investigate the composition, mineralogy and ultrastructure of the giant tetractines of Leuconia johnstoni Carter, 1871 (Baeriidae, Calcaronea) and the organization of surrounding cells. A compositionally distinct core is present in these spicule types. The core measures 3.5–10 μm in diameter and is significantly depleted in Mg and lightly enriched in S compared with the adjacent outer layer in the spicule. Measured Mg/Ca ratios in the core range from 70 to 90 mmol/mol compared to 125–130 mmol/mol in the adjacent calcite envelope. However, this heterogeneous distribution of Mg and S is not reflected in the mineralogy and the microstructure. Raman spectroscopy demonstrates a purely calcitic mineralogy. SEM examination of slightly etched spicules indicates an ultrastructure organized hierarchically in a concentric pattern, with layers less than 250 nm in width inside layers averaging 535 ± 260 nm. No change in structural pattern corresponds to the Mg/Ca variation observed. AFM and TEM observations show a nanogranular organization of the spicules with a network of intraspicular organic material intercalated between nanograins 60–130 nm in diameter. Observations of sclerocyte cells in the process of spiculogenesis suggest that the compositionally distinct core is produced by a sub-apical sclerocyte “founder cell” that controls axial growth, while the envelope is secreted by lateral sclerocytes “thickener cells”, which control radial growth.     

First evidence for Cambrian glaciation provided by sections in Avalonian New Brunswick and Ireland: Additional data for Avalon–Gondwana separation by the earliest Palaeozoic

The first evidence for Cambrian glaciation is provided by two successions on the Avalon microcontinent. The middle lowest Cambrian (middle Terreneuvian Series and Fortunian Stage–Stage 2 boundary interval) has an incised sequence boundary overlain by a fluvial lowstand facies and higher, olive green, marine mudstone on Hanford Brook, southern New Brunswick. This succession in the lower Mystery Lake Member of the Chapel Island Formation may be related to melting of an ice sheet in Avalon. The evidence for this interpretation is a muddy diamictite with outsized (up to 10 cm in diameter), Proterozoic marble and basalt clasts that penetrated overlying laminae in the marine mudstone. That eustatic rise was associated with the mudstone deposition is suggested by an approximately coeval rise that deposited sediments with Watsonella crosbyi Zone fossils 650 km away in Avalonian eastern Newfoundland. A sea-level rise within the Watsonella crosbyi Chron, at ca. 535 Ma, may correspond to a unnamed negative ¹³C excursion younger than the basal Cambrian excursion (BACE) and the ZHUCE excursion in Stage 2 of the upper Terreneuvian Series. Cambrian dropstones are now also recognized on the northern (Gander) margin of Avalon in continental slope–rise sedimentary rocks in southeast Ireland. Although their age (Early–Middle Cambrian) is poorly constrained, dropstones in the Booley Bay Formation provide additional evidence for Cambrian glaciation on the Avalon microcontinent. Besides providing the first evidence of Cambrian glaciation, these dropstone deposits emphasize that Avalon was not part of or even latitudinally close to the terminal Ediacaran–Cambrian, tropical carbonate platform successions of West Gondwana.     

Cenozoic long-term terrestrial climatic evolution in Germany tracked by δ18O of rodent tooth phosphate

Even though the Cenozoic has been recognized as a period of important climate change, long-term climatic changes that took place in the continental domain are still questioned. For an area, southern Germany, for which other long-term palaeoclimatic records exist, analysis of oxygen isotope composition of small mammal teeth has been carried out for localities ranging in age from the late Eocene (c.36 Ma) to the middle Miocene (c.10 Ma). Comparison of this long-term continental δ¹⁸O record with the marine record reveals comparable trends. The major Cenozoic climatic events are thus recognized in the continental oxygen isotope record.Through comparison with other quantitative palaeoclimatic reconstructions available for the studied area, temperatures in southern Germany are broadly estimated to have fluctuated between 12 °C and 25 °C from late Eocene to early late Miocene. According to the different available chronological frameworks, either a ～ 2 °C (considering the classical biostratigraphy) or a ～ 6 °C (considering a revised biostratigraphy) decrease in mean air temperature is estimated for the Eocene/Oligocene boundary.     

A crown‐group demosponge from the early Cambrian Sirius Passet Biota,North Greenland

Calibration of the divergence times of sponge lineages and understanding of their phylogenetic history are hampered by the difficulty in recognizing crown versus stem groups in the fossil record. A new specimen from the lower Cambrian (Series 2, Stage 3; approximately 515 Ma) Sirius Passet Biota of North Greenland has yielded a diagnostic spicule assemblage of the extant demosponge lineages Haploscleromorpha and/or Heteroscleromorpha. The specimen has disarticulated approximately in situ, but represents an individual sponge that possessed monaxon spicules combined with a range of slightly smaller sigma, toxa and unique spiral morphologies. The combination of spicule forms, together with their relatively large size, suggests that the sponge represents the stem lineage of Haploscleromorpha + Heteroscleromorpha. This is the first crown‐group demosponge described from the early Cambrian and provides the most reliable calibration point currently available for phylogenetic studies.     

Datation d’enfouissement par 26Al/10Be et son application préliminaire à des sites du Paléolithique Inférieur en Chine et en France

The radionuclides ²⁶Al and ¹⁰Be in situ produced in quartz near the ground surface by secondary cosmic rays can be used for dating the sediment burial. This paper introduces the principles, preconditions and limitations of the recently established dating method. In China its first trial application is to the site of Peking man. The weighted mean of six significant results of samples from layers 7–10 is 770 ± 80 ka. This date provides strong support to an earlier and longer human presence at the site than once estimated. This method has also been applied for the first time to two Lower Paleolithic sites in the Cher Valley, central France, Lunery “la Terre-des-Sablons” and Brinay “la Noira”. The preliminary results attribute ages of 750 ± 240 and 730 ± 210 ka to the two sites, largely consistent with the previous age estimates based on geological and geomorphological studies and on ESR dating. With its well-founded basis in physics, its independence from other dating methods and its timescale filling a “blank period” in radioisotopic dating, the ²⁶Al/¹⁰Be burial dating will be widely applied and contribute substantially to the establishment of a reliable timescale for the earliest human occurrence and evolution in China and in Europe.     

New insights into the pattern,timing, and duration of the evolutionary origin of the foraminiferal genus Hantkenina

A high-resolution study of the Tethyan Contessa Highway reference section (Gubbio, Italy) has produced a detailed, well-constrained and more complete pattern of the gradual evolutionary origin of the foraminiferal genus Hantkenina from Clavigerinella than hitherto shown. A nine-stage pattern is presented for this evolutionary lineage. The related time frame and duration are assessed using the astronomical calibration of the Contessa Highway record. The evolution of Clavigerinella caucasica to Hantkenina gohrbandti, the real ancestor of Hantkenina, leads in 333 kyr. The H. gohrbandti first appearance is dated at 45.564 Ma. Our findings show that during the middle Eocene, from 46 to 45.5 Ma and with a major pulse centered at 45.521 Ma deep-mesopelagic planktonic foraminifera may have developed different morphological modifications to tolerate temporary exceptionally stressful environmental conditions. These conditions are principally related to poorly oxygenated and usually food-poor waters. This suggests that sustained and expanded oxygen minimum zone conditions and associated enhanced eutrophication might have occurred during that time.     

Holocene vegetation and hydrologic changes inferred from molecular vegetation markers in peat,Penido Vello (Galicia,Spain)

Peat molecular chemistry reflects a combination of plant input and decomposition. Both vegetation community and the degree of decomposition of plant remains are highly dependent on depth and fluctuation of the water table and thus peat organic matter (OM) chemistry reflects past hydrological conditions. Changes in hydrology according to the OM composition (by pyrolysis-gas chromatography/mass spectrometry, pyrolysis-GC/MS) in a high-resolution sampled monolith of an 8000 years old peat deposit are presented. Analysis of 18 modern vegetation species resulted in molecular markers for Erica spp., Deschampsia flexuosa, Juncus bulbosus and Carex binervis, in addition to more general markers which enabled differentiation between woody, grass and moss vegetation. Factor analysis of 106 pyrolysis products quantified for all peat samples enabled identification of mineral (Factor 1) and hydrological (Factor 2) conditions of the bog. Depth profiles of vegetation markers showed good agreement with those of the scores of both factors and enabled the identification of 14 relatively wet periods, dating to 1430–1865 AD, 930–1045 AD, 640 AD, 270–385 AD, 190–215 AD, 135 AD, 45 BC–15 AD, 260–140 BC, 640–440 BC, 1055–960 BC, 1505–1260 BC, 2300 BC, 4190–2945 BC and 5700–5205 BC, which show excellent agreement with other palaeoclimatic studies in Europe. The results emphasize the importance of high-resolution sampling, in combination with the use of multiple vegetation markers and other peat OM characteristics for a proper interpretation of a peat record.