Small and large mammals from the Ciota Ciara cave (Borgosesia,Vercelli, Italy): An Isotope Stage 5 assemblage

The Ciota Ciara cave is located within the Monte Fenera karst system (Borgosesia, Vercelli, Italy) at 670 m a.s.l. The cave entrance presents a deposit with Mousterian quartz and flint industry. The faunal remains from Stratigraphic Units 13, 14 and 103 are the subject of this work and are presented here as a whole for the first time. The large mammal assemblage is dominated by Ursus spelaeus. In addition, a few remains of carnivores such as Panthera leo spelaea, Panthera pardus, Meles meles have been found together with ungulates such as Cervus elaphus and Rupicapra rupicapra. The small mammal assemblage is characterized by a high biodiversity, especially in bats, by the dominance of Clethrionomys glareolus and by a relatively large number of Pliomys coronensis, a species that seems to disappear from the Italian Peninsula at the end of Marine Isotope Stage 5 or during the beginning of MIS 4. The changes in frequency of the small and large mammals between the two S.U. suggest a change from a relatively cold-humid (S.U. 14) to a warmer-still humid climate (S.U. 13). Although no radiometric dates are available yet, the small and large mammal assemblages, the presence of Pliomys coronensis and the climate change inferred by the variation of the small mammal frequencies allow us to correlate these two units of the Ciota Ciara cave to a relatively warm moment of Marine Isotope Stage 5.     

Paleoecological and microenvironmental aspects of the first European hominids inferred from the taphonomy of small mammals (Sima del Elefante,Sierra de Atapuerca,Spain)

Unit TE9 of the Sima del Elefante (Sierra de Atapuerca, Burgos, Spain), where the remains of Homo sp. have been discovered (1.2–1.3 Ma), is also a level rich in small mammals. The taphonomic study of these small vertebrates sheds light on the landscape that provided the setting for the activities of these early hominids and allows us to describe what the cave was like during the formation of the level. Small mammal predators identified in the study indicate that during this period the Sierra de Atapuerca was part of a large biome consisting of semi-open riparian forests with meadows nearby. Postdepositional alterations reveal that the production of fossils took place outside the cave, being transported inside by water currents. During the formation of TE9, the cave presented conditions of high humidity, which made it difficult for hominids to establish occupations inside, although these conditions became somewhat less severe in TE9c, the sublevel where human remains are found.     

Dynamics of East European modern amphibian and reptile species distribution areas and their potential use in Quaternary stratigraphy

The last appearance dates and especially occurrences of amphibian and reptile species have a rather limited stratigraphic potential in Quaternary deposits. However, changes in their areas of distribution against the background of climate variations open some possibilities for biostratigraphy. Based on fossil assemblages of amphibians and reptiles, interglacial or periglacial conditions can be distinguished. Substitution of forest associations by those typical for forest-steppes or steppes within the limits of the modern forest zone can be attributed to climate aridization at the onset of a glaciation. Therefore, during paleogeographic reconstructions, it is important to determine a natural zone, instead of an assortment of possible biotopes. Glacial intervals for modern steppe zones can theoretically be visualized by the emergence of desert taxa. Distribution areas of amphibians and reptiles during interglacial optima show different outlines. They usually varied slightly, but sometimes the range of some species expanded (Bufotes viridis) or species disappeared (Strauchbufo raddei) from a large part of their original distribution. Such changes can be used to define large age intervals within a regional biostratigraphy.     

The Late Pleistocene faunal assemblage from Cava Muracci (Latium,Italy): Palaeoenvironmental implications for coastal central Italy during MIS 3

Palaeoenvironmental information on Marine Isotope Stage 3 (MIS 3) coastal Latium is sparse, mainly based on studies of isolated faunal assemblages or long pollen records from lake sediments, often of insufficient resolution to aid in palaeoenvironmental reconstruction. This study describes in detail the Late Pleistocene faunal assemblage from layers SU11 and SU12 of Cava Muracci (Cisterna di Latina, central Italy), the first of which is a partially-preserved hyena den. The first multi-disciplinary palaeoenvironmental reconstruction of coastal Latium between 34–44 ka BP, a critical time span for the presence of the latest Neanderthals and the arrival of Anatomically Modern Humans (AMH), is provided combining palaeoecological inferences from a previous pollen study of hyena coprolites with the palaeontological study described here. The results indicate a temperate climate and a landscape characterised by the coexistence of at least three habitats within a short distance between the coastline and the inland mountains, suitable for a wide variety of species.     

The fossil bat assemblage of Sima del Elefante Lower Red Unit (Atapuerca,Spain): First results and contribution to the palaeoenvironmental approach to the site

The fossil bat assemblage from the Lower Red Unit of Sima del Elefante (TELRU) in Atapuerca (Burgos, Spain) has been exhaustively analysed for the first time. Bat fossil assemblages are of particular relevance to palaeoenvironmental approaches to sites. Here we integrate our new data on the chiropteran fauna with the data provided previously by other authors on the basis of the small-vertebrate assemblages and the palynology of the site. Our results are consistent with the earlier results in that they indicate a generally warmer climate than at present in the area and stable environmental conditions throughout the major part of the TELRU sequence. However, fossil bat assemblages sometimes lead to problems when they are used in landscape reconstruction. These problems are discussed here and should be taken into account in future works.     

Siwalik synopsis: A long stratigraphic sequence for the Later Cenozoic of South Asia

The Tertiary sediments of northern Pakistan are an exceptional record of terrestrial sedimentation and represent most of Neogene time. Foremost is the Siwalik Group of the Potwar Plateau, for which multiple, superposed fossil levels span ∼18–6 Ma. Well-developed magnetostratigraphic control provides secure dating so that Siwalik fossil horizons may be interpolated into a time scale with resolution to 100,000 years. We describe the geographic setting of the Potwar, give an overview of the temporal distribution of faunas, and discuss changes in paleohabitat and paleoecology with coinciding faunal change, as seen from the Siwalik viewpoint. The long Siwalik biostratigraphy of many successive assemblages with its resolved time scale may be compared directly with other well-dated sequences. Immigrant arrival and timing of faunal change may be traced. The basins of the Iberian Peninsula show somewhat different timing of introduction of hipparionine horses, and faunal turnover in the Siwaliks clearly precedes the Vallesian crisis in Spain. In contrast to the increasingly seasonal precipitation of the late Miocene Potwar, the paleohabitat of coeval North China appears to have been moist and equable, with high diversity faunas. Continued development and comparison of resolved Neogene records allow increasing resolution of the patterns of faunal change on regional to global levels.     

Alveolina-dominated assemblages in the early Eocene carbonates of Jaintia Hills,NE India: Biostratigraphic and palaeoenvironmental implications

Larger benthic foraminifera (LBF) are significant proxies in biostratigraphy and also act as excellent indicators of shallow-marine carbonate environments in fossil series. The Palaeogene LBF recorded from Meghalaya, NE India (eastern part of the relic eastern Tethys/Neo-Tethys) have high potential for dating shallow-marine sediments and documenting the multiple episodes of carbonate sedimentation that have contributed to the development of the Sylhet Limestone Group. Early Eocene witnessed the proliferation of LBF species worldwide, the phenomenon better known as the Larger Foraminiferal Turnover (LFT). Genera like Alveolina, Nummulites and Orbitolites with broad species complexes thrived as the dominant LBF amidst numerous other taxa on the verge of extinction or only surviving as stable forms. The current study emphasizes on the biostratigraphic and palaeoenvironmental account of the early Eocene Umlatdoh Limestone successions outcropping in the Jaintia Hills of Meghalaya, primarily based on the recorded species of Alveolina and other larger benthic foraminifera. Five species of Alveolina — A. oblonga, A. schwageri, A. cf. ruetimeyeri, A. aff. haymanensis and A. aff. varians are recorded in the evaluated sections that indicate an early Eocene age corresponding to the Shallow Benthic Zone 10. Major carbonate facies types in the present assessment include oolitic-smaller benthic foraminiferal -green algal grainstone–packstone, smaller miliolid-Alveolina grainstone, green algal-benthic foraminiferal grainstone, larger porcellaneous (Alveolina) grainstone-packstone, Alveolina-nummulitid grainstone-rudstone, and nummulitid grainstone-rudstone, which indicate a shallow marine, high-energy depositional environment ranging from shoal-sandy bars to a distal inner ramp setting.     

Late Quaternary stratigraphy and sedimentology of Orphan Basin: Implications for meltwater dispersal in the southern Labrador Sea

Orphan Basin is a deep-water basin on the continental margin off Newfoundland, which throughout the late Quaternary received proglacial sediment from local ice that crossed the continental shelf. Sediment from more distant sources was transported southward in the Labrador Current as proglacial plumes and in icebergs. Five sedimentary facies related to glacial processes are distinguished in cores recovered from Orphan Basin: hemipelagic sediment, nepheloid-layer deposits (layered mud), beds rich in ice-rafted detritus (IRD), sand and mud turbidites, and glaciogenic debris-flow deposits. IRD-rich beds correspond to periods of intensified iceberg calving, and layered mud, turbidites, and glaciogenic debris-flow deposits with glacial meltwater discharge.

In the Late Wisconsinan, eight periods of meltwater discharge and iceberg calving from the Newfoundland ice sheet are interpreted from the sediment facies in Orphan Basin. These discharges coincide with the terminations of the colder periods of the D–O cycles recorded in Greenland ice cores. The oldest minor meltwater event (27.5–28.5 cal ka) corresponds to the first Late Wisconsinan ice advance across the Grand Banks and NE Newfoundland Shelf. The following three meltwater discharges (23–23.5, 23.8–24.5, and 25–27 cal ka) deposited sand turbidites and glaciogenic debris-flow deposits seaward of Trinity Trough, which was occupied by an ice stream at this time, and mud turbidites in the southern part of the basin derived from a mid-shelf ice margin on the Grand Banks. Four periods of meltwater discharge occurred during the deglaciation and are centered at 15, 18.5, 19.75, and 20.75 cal ka. The youngest is correlated to Heinrich event 1. In the literature, the 18.5 and 20.75 cal ka events have been recorded in multiple glacial settings in the North Atlantic, and therefore, are interpreted as large-scale events of meltwater discharge and iceberg calving, but in Orphan Basin the 19.75 cal ka event is also of similar scale.     

A refined ammonite biostratigraphy for the Middleand Upper Carixian (Ibex and Davoei Zones,Lower Jurassic) in North-West Europe and stratigraphical details of the Carixian-Domerian boundary

A refined biostratigraphical scheme is described forthe Ibex and Davoei Zones (Carixian Substage, Lower Jurassic) in NW Europe, and the biostratigraphical details of the Carixian — Domerian boundary are outlined. It is based on detailed stratigraphical collections of ammonites from the major Pliensbachian localities in Britain, France and Germany, with supplementary data from Portugal. The zones and subzones, which are largely unchanged from the well-established scheme described by Dean & alii (1961), are further divided into zonules which can be recognised throughout NW Europe. These zonules, nine for the Ibex Zone and seven for the Davoei Zone, probably represent the greatest biostratigraphical resolution readily obtainable using ammonite faunas. The problems inherent in the precise recognition of the chronostratigraphical Carixian-Domerian boundary, owing to slightly discordant species ranges, are discussed.     

Quantitative analysis of the distribution of organelles in tobacco pollen tubes: implications for exocytosis and endocytosis

Summary The present study provides the first quantitative analysis on the distribution of organelles in pollen tubes ofNicotiana tabacum L. Organelles were studied on living pollen tubes by means of fluorescence confocal laser scanning microscopy and on cryo-fixed, freeze-substituted and serially sectioned material by electron microscopy. In the tip a 300 nm to 400 nm thick wall was secreted that proximately gradually separated into a wall with an opaque inner side and a more translucent, layered outer side. Tubular endoplasmic reticulum was particularly abundant in the tip of the tube, surrounding the region where secretory vesicles (SV) accumulated. Mitochondria were randomly distributed throughout the cytoplasm, no accumulations were present. Dictyosomes, however, showed an increased abundance at 25–30 m behind the tip. The accumulation of coated pits (CP) in a zone 6–15 m behind the tip identifies this zone as the major site of endocytosis: 50% of all CP occur in this zone. Quantification of exo- and endocytosis showed that only part of the membrane material of the SV can be retrieved after exocytosis. The typical zonation in endocytotic activity may serve to maintain a difference in membrane protein composition between the tip and the tube.     

Barriers and benefits: implications of artificial night-lighting for the distribution of common bats in Britain and Ireland

Artificial lighting is a particular problem for animals active at night. Approximately 69% of mammal species are nocturnal, and one-third of these are bats. Due to their extensive movements—both on a nightly basis to exploit ephemeral food supplies, and during migration between roosts—bats have an unusually high probability of encountering artificial light in the landscape. This paper reviews the impacts of lighting on bats and their prey, exploring the direct and indirect consequences of lighting intensity and spectral composition. In addition, new data from large-scale surveys involving more than 265 000 bat calls at more than 600 locations in two countries are presented, showing that prevalent street-lighting types are not generally linked with increased activity of common and widespread bat species. Such bats, which are important to ecosystem function, are generally considered ‘light-attracted’ and likely to benefit from the insect congregations that form at lights. Leisler''s bat (Nyctalus leisleri) may be an exception, being more frequent in lit than dark transects. For common pipistrelle bats (Pipistrellus pipistrellus), lighting is negatively associated with their distribution on a landscape scale, but there may be local increases in habitats with good tree cover. Research is now needed on the impacts of sky glow and glare for bat navigation, and to explore the implications of lighting for habitat matrix permeability.     

Dental morphology of the Dawenkou Neolithic population in North China: implications for the origin and distribution of Sinodonty

We compare the incidence of 25 nonmetric dental traits of the people of the Neolithic Dawenkou culture (6300-4500 BP) sites in Shandong Province, North China with those of other East Asian populations. The Dawenkou teeth had an overwhelmingly greater resemblance to the Sinodont pattern typical of Northeast Asia than to the Sundadont pattern typical of Southeast Asia. Multidimensional scaling using Smith's mean measure of divergence (MMD) statistic place the Dawenkou sample near the Amur and the North China-Mongolia populations in the area of the plot indicating typical Sinodonty. The existence of the Sinodont population in Neolithic North China suggests a possible continuity of Sinodonty from the Upper Cave population at Zhoukoudian (about 34000-10000 BP) to the modern North Chinese. The presence of Sinodonty in Shandong Province shows that the Japan Sea and East China Sea were strong barriers to gene flow for at least 3000 years, because at this time the Jomonese of Japan were fully Sundadont. In addition, we suggest that the descendants of the Dawenkou population cannot be excluded as one of the source populations that contributed to sinodontification in Japan.     

The influence of coastal upwelling on the distribution of Calanus chilensis in the Mejillones Peninsula (northern Chile): implications for its population dynamics

A field experiment was carried out in October 1998 during active upwelling in a coastal area off the Mejillones Peninsula (23° S). Zooplankton was sampled at day and night, during two subsequent days at 4 stations inside and outside of the upwelling plume. Three depth strata were sampled: 0–20 m, 20–80 m and 80–200 m. Oceanographic data were obtained in a grid of 23 stations using a CTDO, a fluorometer and a Doppler current meter. Calanus chilensis was mostly represented by late stages, i.e. copepodid C5 and adult males and females. There were no day/night effects on vertical distribution, and abundance was significantly higher inside the upwelling plume in the upper 20-m layer at nearly 14 ind. m^–3, compared to ca. 5 ind. m^–3 outside the upwelling plume. Temperature at 10 m depth and biomass, estimated from stage numbers and their mean dry weights, were used to estimate growth and daily production of Calanus at temperature-dependent rates. The potential loss of biomass from the upwelling center because of advection in the upwelling plume was estimated from current data in the Ekman layer and biomass density. The mean cross-shelf component of the current was estimated at 10.4 km d^–1 within the upwelling plume. This yielded a loss of biomass of 9.7 mg dry weight m^–2 . Production, estimated by a temperature-dependent approach, ranged between 44 and 35 mg dry weight m^–2 d^–1, at mean temperatures of 14.6 °C and 15.8 °C inside and outside of the upwelling plume respectively. Within the plume, as much as 22% of daily production may be advected offshore. However, a higher concentration of biomass in the upwelling plume allowed a greater production compared to surrounding areas. A mass balance approach suggests that advective losses may not have a major impact on the C. chilensis population, because of very high daily production at temperature-dependent rates.     

Geographic distribution of tree species occurring in the region of Manaus, Brazil: implications for regional diversity and conservation

The alpha-diversity of trees found in the region of Manaus, Brazil is among the highest recorded for one-hectare plots in Amazonia or any tropical forest. Based on a survey of the distributions of 2541 Neotropical tree species, we analyzed the geographic distribution of 364 species of terra firme forest trees that occur in the region and that are not edaphic specialists. Fifteen distinct distribution patterns were recognized for trees occurring in Manaus. The great majority of species (84.9%) have continuous, somewhat restricted distributions, 35 (9.6%) show broad distributions and 20 species (5.5%) show disjunction between Amazonia and Eastern Brazil. A remarkable 150 (41.2%) of these species showed the region of Manaus as one of their distribution limits. Using the same pool of 2541 species distributions, the percentage of species with a distribution limit in Manaus was compared with that for other localities known to be centers of botanical collection. The null hypothesis that the difference in proportion of species with distribution limits among these localities and Manaus is insignificant was rejected. We conclude that the results are not an artifact of collecting density, that Manaus is indeed a crossroads of distinct phytogeographic regions, and that this explains part of the high species diversity of trees in the region of Manaus. A number of scenarios proposed for the Pleistocene in Amazonia postulate some degree of fragmentation of Amazonian forests or at least populations. As much as these theories may conflict with each other in some respects, they are compatible with the concept of Manaus as a region of re-convergence of isolated or disrupted floras and faunas. The significance of the vicinity of Manaus in the history of the Amazon flora and its current status as a repository for surprisingly high tree diversity highlights the need to make this region a conservation priority.     

Conservation and function of Rab small GTPases in Entamoeba: Annotation of E. invadens Rab and its use for the understanding of Entamoeba biology

Entamoeba invadens is a reptilian enteric protozoan parasite closely related to the human pathogen Entamoeba histolytica and a good model organism of encystation. To understand the molecular mechanism of vesicular trafficking involved in the encystation of Entamoeba, we examined the conservation of Rab small GTPases between the two species. E. invadens has over 100 Rab genes, similar to E. histolytica. Most of the Rab subfamilies are conserved between the two species, while a number of species-specific Rabs are also present. We annotated all E. invadens Rabs according to the previous nomenclature [Saito-Nakano, Y., Loftus, B.J., Hall, N., Nozaki, T., 2005. The diversity of Rab GTPases in Entamoeba histolytica. Experimental Parasitology 110, 244-252]. Comparative genomic analysis suggested that the fundamental vesicular traffic machinery is well conserved, while there are species-specific protein transport mechanisms. We also reviewed the function of Rabs in Entamoeba, and proposed the use of the annotation of E. invadens Rab genes to understand the ubiquitous importance of Rab-mediated membrane trafficking during important biological processes including differentiation in Entamoeba.     

Crystal structures of the Rhodococcus proteasome with and without its pro-peptides: implications for the role of the pro-peptide in proteasome assembly

To understand the role of the pro-peptide in proteasome assembly, we have determined structures of the Rhodococcus proteasome and a mutant form that prevents the autocatalytic removal of its pro-peptides. The structures reveal that the pro-peptide acts as an assembly-promoting factor by linking its own beta-subunit to two adjacent alpha-subunits, thereby providing a molecular explanation for the observed kinetics of proteasome assembly. The Rhodococcus proteasome has been found to have a substantially smaller contact region between alpha-subunits compared to those regions in the proteasomes of Thermoplasma, yeast, and mammalian cells, suggesting that a smaller contact area between alpha-subunits is likely the structural basis for the Rhodococcus alpha-subunits not assembling into alpha-rings when expressed alone. Analysis of all available beta-subunit structures shows that the contact area between beta-subunits within a beta-ring is not sufficient for beta-ring self-assembly without the additional contact provided by the alpha-ring. This appears to be a fail-safe mechanism ensuring that the active sites on the beta-subunits are activated only after proteasome assembly is complete.     

Methionyl-tRNA synthetase from E. coli: direct evidence for exchange of protomers in the dimeric enzyme by using deuteration and small-angle neutron scattering

Direct demonstration of the reversible dissociation of native dimeric methionyl-tRNA synthetase from E. coli has been obtained using small angle neutron scattering and deuterated enzyme. Structural parameters of the fully deuterated dimer are very similar to the hydrogenated one. Analysis of the variations of the intensity and of the radius of gyration of a stoichiometric mixture of the two types of dimer (hydrogenated and deuterated), as a function of D2O content in the solvent, enabled us to characterize an hybrid dimer, having both hydrogenated and deuterated protomers. By separating the contribution of each protomer to the scattering, the radius of gyration of the protomer in situ and the distance between the centers of mass of each protomer in the dimer are determined.     

The pregenital abdominal musculature in phasmids and its implications for the basal phylogeny of Phasmatodea (Insecta: Polyneoptera)

Recently several conflicting hypotheses concerning the basal phylogenetic relationships within the Phasmatodea (stick and leaf insects) have emerged. In previous studies, musculature of the abdomen proved to be quite informative for identifying basal taxa among Phasmatodea and led to conclusions regarding the basal splitting events within the group. However, this character complex was not studied thoroughly for a representative number of species, and usually muscle innervation was omitted. In the present study the musculature and nerve topography of mid-abdominal segments in both sexes of seven phasmid species are described and compared in detail for the first time including all putative basal taxa, e.g. members of Timema, Agathemera, Phylliinae, Aschiphasmatinae and Heteropteryginae. The ground pattern of the muscle and nerve arrangement of mid-abdominal segments, i.e. of those not modified due to association with the thorax or genitalia, is reconstructed. In Timema, the inner ventral longitudinal muscles are present, whereas they are lost in all remaining Phasmatodea (Euphasmatodea). The ventral longitudinal muscles in the abdomen of Agathemera, which span the whole length of each segment, do not represent the plesiomorphic condition as previously assumed, but might be a result of secondary elongation of the external ventral longitudinal muscles. Sexual dimorphism, common within the Phasmatodea, also applies to the muscle arrangement in the abdomen of some species. Only in the females of Haaniella dehaanii (Heteropteryginae) and Phyllium celebicum (Phylliinae) the ventral external longitudinal muscles are elongated and span the length of the whole segment, possibly as a result of convergent evolution.     

The distribution of the Rocky Mountain tailed frog (Ascaphus montanus) in relation to the fluvial system: implications for management and conservation

The mating, egg-laying, and larval development of tailed frogs occur in dynamic mountain streams. During the lengthy (up to 5 years) aquatic residency these species are vulnerable to channel disturbances that can be exacerbated by land uses. Researchers have highlighted specific tailed frog habitat associations but never in the context of fluvial system processes. Based on an extensive regional study with a watershed-wide sampling strategy, we demonstrate that the Rocky Mountain tailed frog (Ascaphus montanus) is limited to contributing basins of roughly 0.3–100 km² in size, with peak numbers in basins up to 35 km². We conclude that the primary determinant of tailed frog distribution patterns in a watershed is basin area, a proximate variable for channel process domain and regional stream discharge: tailed frogs are adapted to cascade and step-pool channel morphologies that characterize these small basins, presumably because they afford more bedform stability and pore-space refugia than do smaller, colluvial headwaters, or larger, floodplain-forming plane bed and pool-riffle bedforms of mainstem rivers. Secondarily, climate and physiography interact to influence occurrence and abundance at the watershed level by controlling such variables as runoff, water temperature, and sedimentation regime. This point has important management implications because it forces us to recognize that in complex ecosystems, wildlife habitat associations are contingent on site-specific interactions amongst fluvial system control variables: significance levels of any one variable to tailed frog distribution will not necessarily be consistent among basins. The study clearly shows that case studies can produce conflicting results when they lack a process-based understanding of ecological response.