Assessment of capybara (Hydrochoerus hydrochaeris) populations in the wetlands of Corrientes,Argentina

Ten sampling sites were selected to represent six distinct habitat types used by capybaras (clean lagoons, dirty lagoons, cutwaters, fens and marshes, gallery forests, and erosion ditches). The sites were sampled during winter (July and August); densities were expressed as number of capybaras per linear km of shoreline (C/LKS). The sites were classified as protected from poachers (P), under light hunting pressure (LHP), and under heavy hunting pressure (HHP). Clean protected (P) lagoons had three times as many capybaras as LHP ones (30.7 and 10.9 C/LKS, respectively), and thirty times those under HHP (1.0 C/LKS). Protected marshes and dirty lagoons had even higher capybara densities (52.5 and 50.0 C/LKS, respectively). Gallery forests under LHP had low densities (6.3 C/LKS), and protected cutwaters intermediate densities (27.5 C/LKS). Erosion ditches had exceptionally high densities (900 C/LKS), probably because cattle were fenced out, reducing forage competition. These densities, when converted to the standard unit area measurement (individuals/ha), were similar to those obtained by other researchers in the Brazilian Pantanal, and somewhat smaller than those in the Venezuelan Llanos. Mean number of capybaras per group remained relatively constant in all habitats (averages ranged between 9.2 and 11.8 individuals/group) but its coefficient of variation was much higher in LHP sites, probably because social structure was altered severely by hunting. The overall ratio of young to adults and juveniles was 1:7.4. In one of the sites, 13 of 34 groups (38.2%) were with young (average of 17 capybaras per group, 4.7 of which were young), confirming that this species can reproduce all year long.Requests for reprints should be sent to: Dr. J. Rabinovich.     

Characterization of microsatellite markers from capybaras,Hydrochoerus hydrochaeris (Rodentia: Hydrochoeridae)

Fourteen microsatellite loci were isolated from capybaras (Hydrochoerus hydrochaeris), which are large, diurnal social rodents that occur in the wet savannas of South America. Five of these loci were monomorphic. The remaining nine loci were polymorphic (two to seven alleles per locus), with observed levels of heterozygosity ranging from 0.063 to 0.800 (n = 17 animals). The latter loci provide a valuable tool for assessing patterns of parentage and kinship within capybara social groups.     

Rumen Ophryoscolecid Protozoa in the Hindgut of the Capybara (Hydrochoerus hydrochaeris)1

Rumen ophryoscolecid protozoa were observed in feces obtained from two capybara (Hydrochoerus hydrochaeris) housed at the Columbus Zoo, Columbus, Ohio. Total numbers were 58.1 times 10⁴ and 19.0 times 10⁴ per gram of wet feces in a male and female capybara, respectively. Four common rumen species of Entodinium were observed in the feces from both animals, with low numbers of Eudiplodinium maggii and Elytroplastron bubali also occurring in the male. Establishment of rumen ophryoscolecid ciliates in the intestinal tract of non-ruminant herbivores has not been reported previously.     

Vocal Repertoire of Captive Capybara (Hydrochoerus hydrochaeris): Structure,Context and Function

In this work we describe the structure, behavioral context and functionality of the vocal repertoire of capybaras, a social Caviomorph rodent. Additionally, since territoriality is present in this species, we hypothesize the occurrence of vocal differences among social groups. We analyzed a total of 2069 calls emitted by 28 animals from three different social groups. The capybara’s repertoire is comprised by seven call types (whistle, cry, whine, squeal, bark, click and tooth‐chattering). The vocalizations were functionally categorized as contact, alarm, distress and agonistic calls considering their behavioral contexts. The click calls emitted by the adults of the three captive capybara groups were significantly different, confirming our hypothesis of social groups’ vocal differences. The richness of interactions mediated by vocalization in capybaras suggests that the species’ communication is an important mechanism to regulate social encounters and to alert members of the group about environmental cues.     

Patterns of habitat use and selection by the capybara (Hydrochoerus hydrochaeris): a landscape-scale analysis

Habitat selection analysis provides useful information on how animals become distributed in response to spatial heterogeneity. Here, we analyze the habitat use and selection of different water bodies (marsh, swamps and round shallow lakes) by capybaras (Hydrochoerus hydrochaeris) and their relation to environmental variables during contrasting climate-hydrological seasons in the Esteros del Iberá (Corrientes, Argentina). We evaluated the intensity of use by capybaras through the total number of individuals (abundance) in each water body, the number and mean size of social groups, and the physical and vegetation characteristics of the environment. The capybaras used marsh and swamps according to availability in both seasons, while they used rounded shallow lakes less than their available would suggest in summer. The use intensity of different rounded shallow lakes estimated based on group size did not show significant differences. In contrast, significant differences were observed when evaluated by the number of individuals in each rounded shallow lake. Different intensity of use was closely associated with environmental and vegetation characteristics. The results show that habitat suitability for capybaras is associated with vegetation cover and “embalsados” in the low-lying area rather than with the morphometry of the rounded shallow lakes. The pattern of habitat selection may depend on forage quality, water availability for thermoregulation and mating, and presence of shelter and resting sites. On the other hand, the present study shows how the size, shape and the abundance of different types of water bodies affect population abundance and density.     

Behavioral observations in a capybara colony (Hydrochoerus hydrochaeris)

Capybaras (Hydrochoerus hydrochaeris), the largest living rodents, are receiving increasing interest as an economically attractive source of meat and hides in tropical America. An unmanaged capybara colony was studied in a setting adjacent to agricultural activities in Brazil. Preliminary notes were made on alarm responses to intruders, various aspects of flight behavior, and investigatory activity. The findings were mostly consistent with studies carried out by other investigators, suggesting that capybara behavior is similar from one region to another. The animals have potential for habituation to humans and are probably good candidates for domestication. Expanded commercial exploitation of capybaras could benefit their survival and welfare as well as contributing to the preservation of neotropical ecology in general.     

Evaluation of three immobilization combinations in the capybara (Hydrochoerus hydrochaeris)

Capybaras (Hydrochoerus hydrochaeris) are the world's largest rodent. Owing to its uniqueness, 50 AZA institutions in North America display this species. As shown by a survey, no standard anesthetic protocol has been developed for this species. As a part of an ongoing behavioral study in Venezuela, capybaras were surgically implanted with radio transmitters. Animals were randomly assigned to one of the three immobilization protocols: (1) Tiletamine HCl/Zolazepam HCl, (2) Tiletamine HCl/Zolazepam HCl/Medetomidine HCl, and (3) Tiletamine HCl/Zolazepam HCl/Medetomidine HCl/Butorphanol tartrate. The protocol recommended for minimally invasive procedures when inhalant anesthetics are unavailable is a combination of Tiletamine HCl/Zolazepam HCl/Medetomidine HCl/Butorphanol tartrate. This is based on ease of administration, volume, onset of action, depth of anesthetic achieved, reversibility, safety, and costs. Zoo Biol 29:59–67, 2010. © 2009 Wiley‐Liss, Inc.     

Differential Distribution of Gonadotropin-Releasing Hormone Variants in the Brain of Hydrochaeris hydrochaeris (Mammalia, Rodentia)

1.In a previous paper we reported evidence for the presence of mGnRH- and sGnRH-like peptides in the preoptic–hypothalamic region of the capybara Hydrochaeris hydrochaeris (Montaner et al., 1998). In that study, the presence of a cGnRH-II like molecule in olfactory bulb extracts was suggested.2.The capybara, the largest living rodent in the world, belongs to the order Hystricomorpha, which is considered to be one of the oldest groups of rodents. Some authors consider that this group is the ancestor of all remaining rodents.3.In this study we have characterized GnRH molecular variants found in extracts from the olfactory bulbs and the mesencephalic region of capybara. These regions represent the two GnRH neuronal systems: the terminal nerve–septopreoptic and the midbrain systems.4.An indirect method combining reverse-phase high-performance liquid chromatography (RP-HPLC) and radioimmunoassay (RIA) was used to characterize GnRH variants. The analysis of both extracts with two different RIA systems revealed three immunoreactive GnRH peaks, coeluting with mGnRH, cIIGnRH, and sGnRH synthetic standards. These results were additionally supported by serial dilution studies with specific antisera.5.To our knowledge this the first report on the presence of three GnRH variants in the brain of an eutherian mammal. These results suggest that, similarly to other vertebrates, the expression of multiple GnRH variants may also be a common pattern in mammals.     

How to Make a Rodent Giant: Genomic Basis and Tradeoffs of Gigantism in the Capybara,the World’s Largest Rodent

Gigantism results when one lineage within a clade evolves extremely large body size relative to its small-bodied ancestors, a common phenomenon in animals. Theory predicts that the evolution of giants should be constrained by two tradeoffs. First, because body size is negatively correlated with population size, purifying selection is expected to be less efficient in species of large body size, leading to increased mutational load. Second, gigantism is achieved through generating a higher number of cells along with higher rates of cell proliferation, thus increasing the likelihood of cancer. To explore the genetic basis of gigantism in rodents and uncover genomic signatures of gigantism-related tradeoffs, we assembled a draft genome of the capybara (Hydrochoerus hydrochaeris), the world’s largest living rodent. We found that the genome-wide ratio of nonsynonymous to synonymous mutations (ω) is elevated in the capybara relative to other rodents, likely caused by a generation-time effect and consistent with a nearly neutral model of molecular evolution. A genome-wide scan for adaptive protein evolution in the capybara highlighted several genes controlling postnatal bone growth regulation and musculoskeletal development, which are relevant to anatomical and developmental modifications for an increase in overall body size. Capybara-specific gene-family expansions included a putative novel anticancer adaptation that involves T-cell-mediated tumor suppression, offering a potential resolution to the increased cancer risk in this lineage. Our comparative genomic results uncovered the signature of an intragenomic conflict where the evolution of gigantism in the capybara involved selection on genes and pathways that are directly linked to cancer.     

Histopathology of Tick-Bite Lesions in Naturally Infested Capybaras (Hydrochoerus hydrochaeris) in Brazil

In the present work features of tick-bite lesions were evaluated in capybaras naturally infested with Amblyomma cajennense and Amblyomma dubitatum ticks. Gross appearance of tick bite site was characterized by a mild swelling and erythema. Microscopic examination revealed the cement cone, a tube-like homogenous eosinophilic mass penetrating deep into the dermis. This structure was surrounded in the dermis by a cellular infiltrate and free eosinophilic granules and was associated to edema of variable intensity. Necrosis was a common feature deep in the dermis particularly at the far end of the eosinophilic tube. Hyperplasia, cellular edema and occasionally necrosis of keratinocytes could be seen at both sides of the ruptured epidermis. Cellular infiltrate was constituted overwhelmingly by polymorphonuclear leukocytes with eosinophilic granules. In capybaras cells with such features can be either eosinophils or heterophils (pseudoeosinophils), the latter being the equivalent of neutrophils of other mammals. Ultrastructural analysis of the cellular infiltrate revealed the predominance of heterophils over eosinophils. Mononuclear cells and mast cells and, in lesser numbers, basophils were also seen at skin attachment sites. The presence of heterophils in the reaction of capybaras against Amblyomma ticks is an outstanding feature but its role in the reaction to the tick is not known. It is however speculated that capybara heterophils might be associated with a more permissive environment for tick feeding and pathogen transmission as already shown for the equivalent cell type, the neutrophil, in the reaction of the dog against the Rhipicephalus sanguineus tick.     

Genetic structure of a group of capybaras, Hydrochoerus hydrochaeris (Rodentia: Hydrocheridae) in the Colombian Eastern Llanos

The capybaras are the biggest rodents in the world but, however, there are not extensive population genetics studies on them. In the current work, we studied the genetic structure of a troop of 31 capybaras (Hydrochoerus hydrochaeris) sampled in Hato Corozal, Casanare Department at the Colombian Eastern Llanos, by means of five microsatellite markers. The gene diversity was 0.61 and the average allele number was 5.2, which is a medium-low level for markers of this nature. Out five markers employed, three were in Hardy-Weinberg equilibrium meanwhile one showed a significant homozygote excess and other presented a significant heterozygote excess. There were not significant genetic differences between males and females inside this troop. The application of different procedures to determine possible historical demographic changes (population expansions or bottlenecks) clearly showed that the population analyzed crossed over a very narrow recent bottleneck. The illegal hunt is the possibly cause of this strong genetic bottleneck.     

Spatial distribution and habitat preference of the endangered tarantula, Brachypelma klaasi (Araneae: Theraphosidae) in Mexico

Brachypelma, a genus of nine endangered tarantula species in Mexico, is the only group of spiders included in Appendix II of CITES, owing to habitat degradation and illegal trafficking. However, while the majority of the nine species of Brachypelma are thought to be threatened, little is known of their ecology and distribution. Brachypelma klaasi is the rarest species, occurring in a few isolated populations on the Pacific coast of Mexico. We present an analysis of population distribution and micro-habitat requirements of B. klaasi over different spatial scales within the biological reserve at Chamela, Jalisco as part of a wider ecological study of the endangered Brachypelma group. Burrows and dispersing spiders were confined to a southern area of the reserve covering approximately 0.5 km². Within this area, burrows were not aggregated at lower spatial scales (2⁴–2¹⁶ m²), unlike other related species. Also, there was no evidence that intra-specific interactions (either positive or negative interactions) influenced the distribution of burrows. Distribution of burrows at low spatial scales was related to low afternoon temperatures and high humidity in mid-summer. These abiotic factors may influence the survival and development of eggs and spiderlings, and appear to be more important in governing the distribution of B. klaasi than are food resources or intra-specific interactions. We discuss how these findings may facilitate the re-introduction of captive-bred individuals of B. klaasi and other Brachypelma species.     

Patterns in the abundance and distribution of ichneumonid parasitoids within and across habitat patches

Abstract 1. Knowing how species are distributed across a landscape can considerably aid the management of populations and species richness. Insect parasitoids constitute a large fraction of terrestrial biodiversity and help regulate other insect populations, but their ecology is poorly known at a landscape scale. 2. Using Malaise traps distributed first extensively and then intensively across woodland patches in an agricultural landscape, we tested whether four ichneumonid subfamilies display (i) a positive relationship between abundance and occupancy, (ii) a positive relationship between abundance in the extensive sample and abundance in the intensive sample, and (iii) aggregation across traps. 3. A positive relationship between abundance and occupancy was found across species in both samples, and was relatively strong. Abundance in the extensive samples was positively correlated with abundance in the intensive samples. On average, species were aggregated in both samples, although aggregation was not necessary for a positive abundance–occupancy relationship. 4. These results suggest that ichneumonid species can largely be classified on a continuum from widespread and locally abundant to localised and locally scarce. The former species allow the potential for pervasive natural control of host populations. The latter species, which constitute a substantial majority of the species list, will be vulnerable to extinction through both stochastic forces and widespread adverse forces such as climate change and habitat modification. However, the assessment of species’ status is likely to be facilitated by the positive abundance–occupancy relationship. 5. Species inventories for ichneumonids will be taxing because of the need to sample both intensively and extensively to detect rare species, which constitute the majority of species. However, it is possible to generalise species abundances across spatial scales and years, facilitating monitoring.     

The influence of environmental variables on capybara (Hydrochoerus hydrochaeris: Rodentia, Hydrochoeridae) detectability in anthropogenic environments of southeastern Brazil

Capybaras were monitored weekly from 1998 to 2006 by counting individuals in three anthropogenic environments (mixed agricultural fields, forest and open areas) of southeastern Brazil in order to examine the possible influence of environmental variables (temperature, humidity, wind speed, precipitation and global radiation) on the detectability of this species. There was consistent seasonality in the number of capybaras in the study area, with a specific seasonal pattern in each area. Log-linear models were fitted to the sample counts of adult capybaras separately for each sampled area, with an allowance for monthly effects, time trends and the effects of environmental variables. Log-linear models containing effects for the months of the year and a quartic time trend were highly significant. The effects of environmental variables on sample counts were different in each type of environment. As environmental variables affect capybara detectability, they should be considered in future species survey/monitoring programs.     

Earthworm secondary production and N flux in agroecosystems: a comparison of two approaches

Production was estimated for Aporrectodea spp. and Lumbricus spp. populations in corn agroecosystems with a 5-year history of manure or inorganic fertilizer applications during 1994–1995 and 1995–1996. Earthworm biomass and production were greater in manure than inorganic fertilizer plots, although biomass and production declined by about 50% between 1994–1995 and 1995–1996 due to unfavorable climatic conditions. Production was highest during the spring and autumn when soil temperatures were between 4 and 22°C. Production was higher in Lumbricus spp. than Aporrectodea spp. populations due to greater Lumbricus spp. biomass. Aporrectodea spp. production was 3.47–16.14 g ash-free dry weight (AFDW) m^–2 year^–1, while Lumbricus spp. production was 6.09–18.11 g AFDW m^–2 year^–1, depending on the fertilizer treatment and the method used to estimate production. However, production estimates from the instantaneous growth rate method were within 27% of the values calculated using the size-frequency method. Nitrogen flux through earthworms was used to estimate efficiency quotients. Net production efficiency (P/A) ranged from 0.64 to 0.76, assimilation efficiency (A/C) ranged from 0.1 to 0.3, and gross production efficiency (P/C) ranged from 0.06 to 0.22. Annual N flux through earthworm populations was higher in manure than inorganic fertilizer plots, and ranged from 2.95 to 5.47 g N m^–2 year^–1 in 1994–1995 and 1.76 to 2.92 g N m^–2 year^–1 in 1995–1996. The N flux through earthworms represented an amount equivalent to 16–30% of crop N uptake during 1994–1995 and 11–18% of crop N uptake during 1995–1996. We concluded that the effects of earthworms on N cycling in corn agroecosystems were substantial, and that N flux through earthworms was influenced significantly by fertilizer amendments. Received: 20 September 1999 / Accepted: 24 March 2000     

Influence of habitat heterogeneity on the distribution of larval Pacific lamprey (Lampetra tridentata) at two spatial scales

1. Spatial patterns in channel morphology and substratum composition at small (1–10 metres) and large scales (1–10 kilometres) were analysed to determine the influence of habitat heterogeneity on the distribution and abundance of larval lamprey. 2. We used a nested sampling design and multiple logistic regression to evaluate spatial heterogeneity in the abundance of larval Pacific lamprey, Lampetra tridentata, and habitat in 30 sites (each composed of twelve 1‐m² quadrat samples) distributed throughout a 55‐km section of the Middle Fork John Day River, OR, U.SA. Statistical models predicting the relative abundance of larvae both among sites (large scale) and among samples (small scale) were ranked using Akaike's Information Criterion (AIC) to identify the ‘best approximating’ models from a set of a priori candidate models determined from the literature on larval lamprey habitat associations. 3. Stream habitat variables predicted patterns in larval abundance but played different roles at different spatial scales. The abundance of larvae at large scales was positively associated with water depth and open riparian canopy, whereas patchiness in larval occurrence at small scales was associated with low water velocity, channel‐unit morphology (pool habitats), and the availability of habitat suitable for burrowing. 4. Habitat variables explained variation in larval abundance at large and small scales, but locational factors, such as longitudinal position (river km) and sample location within the channel unit, explained additional variation in the logistic regression model. The results emphasise the need for spatially explicit analysis, both in examining fish habitat relationships and in developing conservation plans for declining fish populations.     

Effects of longitudinal variations in stream habitat structure on fish abundance: an analysis based on subunit-scale habitat classification

SUMMARY 1. Stream reaches contain assortments of various habitat types that can be defined at different spatial scales, such as channel unit (e.g. pools, riffles) and subunit (patches within channel units). We described longitudinal (upstream–downstream) patterns of stream habitat structure by considering subunits as structural elements, and examined their effects on the abundance of masu salmon ( Oncorhynchus masou ) and rosyface dace ( Leuciscus ezoe ) in a third-order tributary of the Teshio River in northern Hokkaido, Japan.
2. Nine subunit types were determined on the basis of water depth, current velocity and substrate, using 0.5 × 0.5 m grids. Although both masu salmon and rosyface dace used pools as a major habitat, the former preferred a subunit type occurring at pool heads (PH subunit) while the latter preferred a slow-current edge type (SE-2 subunit).
3. Along the course of the stream, slow-edge subunits (SE-1, 2 and 3) increased in frequency downstream while fast-edge subunits (FE-1 and 2) decreased, suggesting a downstream development of slow-current edges. Regression analyses indicated that longitudinal variation in masu salmon abundance was explained by the area of PH, rather than pools. Masu salmon density increased with the area of PH. Rosyface dace abundance was explained by a combination of water depth and the area of SE-2, both effects being positive.
4. Longitudinal variations in the abundance of both species were related to the abundance of their preferred habitat at the subunit scale, rather than channel-unit scale. The results emphasise the importance of fine-scale patchiness when examining stream fish habitats.