No biotic homogenisation across decades but consistent effects of landscape position and pH on macrophyte communities in boreal lakes

It has been predicted that spatial beta diversity shows a decreasing trend in the Anthropocene due to increasing human impact, causing biotic homogenisation. We aimed to discover if vascular aquatic macrophyte communities show different spatial patterns in beta diversity in relation to land use and environmental characteristics in different decades from 1940s to 2010s. We aimed to discover if spatial structures differ between species-, phylogeny- and functional-based beta diversity. We used presence–absence data of aquatic macrophytes from five decades from small boreal lakes. We utilized generalised dissimilarity modelling to analyse spatial patterns in beta diversity in relation to environmental gradients. We found that lake elevation and pH were the most important variables in each decade, while land use was not particularly important in shaping beta diversity patterns. We did not find signs of a decreasing trend in spatial beta diversity in our study area during the past 70 yr. We did not find signs of either biotic homogenisation or biotic differentiation (taxonomic, phylogenetic or functional). Vascular aquatic macrophyte communities showed only slightly different beta diversity patterns in relation to human impact across decades. The patterns of different facets of beta diversity diverged only slightly from each other. Lake position in the landscape, reflecting both natural connectivity and lake characteristics, explained the patterns found in beta diversity, probably because our study area has faced only modest changes in land use from 1940s to 2010s when compared globally. Our study highlights the fact that biotic homogenisation is not an unambiguous process acting similarly at all spatial and temporal scales or in different environments and different organism groups.     

Rainfall induces time-lagged changes in the proportion of tropical aquatic hosts infected with metazoan parasites

Rainfall serves as a powerful driving force, shifting temporal abundance and prevalence patterns in parasites and free-living aquatic organisms in tropical environments. However, there is a lack of sound evidence showing the temporal scales at which rainfall influences infection parameters of parasites in the tropics either directly by affecting the parasite life cycle or indirectly by modifying host population abundance. In the present study, we demonstrate that changes in rainfall patterns lead to changes in the proportion of infected hosts with several parasite species, causing immediate or lagged favourable conditions for an increase in levels of infection. However, the temporal scale of the influence of rainfall varied depending on the ecological characteristics of aquatic ecosystems. Despite the environmental heterogeneity and stochastic events (storms and hurricanes) which affect the study sites, the proportion of infected hosts shows frequency cycles on a yearly scale, suggesting that environmental changes are within the range of variability that naturally occur at the study sites. We propose that the incorporation of stochastic events into long-term predictive models is crucial for understanding the potential effects of global climate change on infection parameters of tropical parasites.     

Complex role of predators in structuring soft-sediment macrobenthic communities: Implications of changes in spatial scale for experimental studies

In estuarine and coastal soft-sediment systems, the role that predators play in structuring communities appears to be variable. Attributes of a particular predator that influence its role in structuring the community include: the rate of prey consumption; the behaviour, morphology and mobility of the predator; and, in soft- sediment communities, sediment disturbances associated with feeding. Reviews of field experiments designed to assess the role of predators in influencing the structure and function of soft-sediment communities have concluded that many of the predators are generalists and there is usually a lack of competitive exclusion. Thus predation structures communities by many complex and indirect interactions that are often difficult to predict and generalize. Variations in the apparent strength and role of predation in structuring benthic communities may depend on a variety of ecosystem characteristics and/or aspects of study design. In this paper, I consider whether we have been conducting our experiments at the appropriate scales. Five case studies from Manukau Harbour (New Zealand) illustrate how small changes in the spatial scale can affect results, due to predator perceptions and prey mobility. The results of these studies demonstrate the need to identify scales at which predator effects are likely to be important and to fit experiments within the dynamics and heterogeneity of the system being studied. To do this, we need basic information on the natural history, behaviour and spatial and temporal variability of both predators and prey communities. We also need to be specific about scales of measurement when matching theoretical predictions to field observations/experiments. Finally, to enhance our ability to generalize from specific studies, we need to gather data that will enable us to both predict and test the importance of predation over a range of spatial and temporal scales.     

Connecting through space and time: catchment-scale distributions of bacteria in soil,stream water and sediment

Terrestrial and aquatic environments are linked through hydrological networks that transport abiotic components from upslope environments into aquatic ecosystems. However, our understanding of how bacteria are transported through these same networks is limited. Here, we applied 16S rRNA gene sequencing to over 500 soil, stream water and stream sediment samples collected within a native forest catchment to determine the extent to which bacterial communities in these habitats are connected. We provide evidence that while the bacterial communities in each habitat were significantly distinct from one another (PERMANOVA pairwise P < 0.001), the bacterial communities in soil and stream samples were weakly connected to each other when stream sediment sample locations were downhill of surface runoff flow paths. This pattern decreased with increasing distance between the soil and sediment samples. The connectivity between soil and stream water samples was less apparent and extremely transient; the greatest similarity between bacterial communities in soil and stream water overall was when comparing stream samples collected 1 week post soil sampling. This study shows how bacterial communities in soil, stream water and stream sediments are connected at small spatial scales and provides rare insights into the temporal dynamics of terrestrial and aquatic bacterial community connectivity.     

Assessing the bioaccumulation of contaminants from sediments by fish and other aquatic organisms

Contaminated sediments that are not acutely toxic to aquatic organisms but contain bioaccumulable toxic substances present a common, yet poorly understood problem for regulatory decision makers. In order to recommend options to minimize bioaccumulation of these toxic substances, decision-makers need estimates of 1. which substances are available for accumulation by aquatic organisms; and 2. the potential impacts of such accumulation. The most direct and meaningful approach to estimating bioavailability is measurement of contaminant uptake by aquatic organisms exposed to the sediments of concern. Reasonably reliable methodologies exist for performing such exposures in the laboratory and in situ using marine or freshwater organisms. Such methods can demonstrate short-term potential for bioaccumulation of toxics from the sediments, but not necessarily the biological significance or long-term impact of any accumulated residues in the organisms and transfer of those residues through the food chain. Since most contaminated sediments contain a mixture of toxic substances, determination of the biological significance of their accumulation is not likely in the near future. Thus, the direct measurement of significant bioaccumulation of toxic substances from the sediments remains the most immediately useful index in a decision-making process.Contribution Number 631 of the National Fisheries Center-Great Lakes     

Ecological Thresholds: The Key to Successful Environmental Management or an Important Concept with No Practical Application?

An ecological threshold is the point at which there is an abrupt change in an ecosystem quality, property or phenomenon, or where small changes in an environmental driver produce large responses in the ecosystem. Analysis of thresholds is complicated by nonlinear dynamics and by multiple factor controls that operate at diverse spatial and temporal scales. These complexities have challenged the use and utility of threshold concepts in environmental management despite great concern about preventing dramatic state changes in valued ecosystems, the need for determining critical pollutant loads and the ubiquity of other threshold-based environmental problems. In this paper we define the scope of the thresholds concept in ecological science and discuss methods for identifying and investigating thresholds using a variety of examples from terrestrial and aquatic environments, at ecosystem, landscape and regional scales. We end with a discussion of key research needs in this area.     

Effects of oceanic salinity on body condition in sea snakes

Since the transition from terrestrial to marine environments poses strong osmoregulatory and energetic challenges, temporal and spatial fluctuations in oceanic salinity might influence salt and water balance (and hence, body condition) in marine tetrapods. We assessed the effects of salinity on three species of sea snakes studied by mark-recapture in coral-reef habitats in the Neo-Caledonian Lagoon. These three species include one fully aquatic hydrophiine (Emydocephalus annulatus), one primarily aquatic laticaudine (Laticauda laticaudata), and one frequently terrestrial laticaudine (Laticauda saintgironsi). We explored how oceanic salinity affected the snakes' body condition across various temporal and spatial scales relevant to each species' ecology, using linear mixed models and multimodel inference. Mean annual salinity exerted a consistent and negative effect on the body condition of all three snake species. The most terrestrial taxon (L. saintgironsi) was sensitive to salinity over a short temporal scale, corresponding to the duration of a typical marine foraging trip for this species. In contrast, links between oceanic salinity and body condition in the fully aquatic E. annulatus and the highly aquatic L. laticaudata were strongest at a long-term (annual) scale. The sophisticated salt-excreting systems of sea snakes allow them to exploit marine environments, but do not completely overcome the osmoregulatory challenges posed by oceanic conditions. Future studies could usefully explore such effects in other secondarily marine taxa such as seabirds, turtles, and marine mammals.     

Potential roles for recently discovered chytrid parasites in the dynamics of harmful algal blooms

Zoosporic true fungi belonging to the phylum Chytridiomycota, commonly referred to as chytrids, are ubiquitous in aquatic environments, however their role in phytoplankton population and eco-physiological dynamics is not fully understood. With the rising occurrence of harmful algal blooms (HABs) of phytoplankton worldwide, there is a growing need to investigate the factors affecting toxicity in algae, with a view to determining the significance of these factors in light of the current trends in global climate change. In this review we present current knowledge regarding the parasitism of phytoplankton by chytrids, including incidence of chytrid epidemics, methodologies used in their isolation and classification, their life cycles and infection strategies, and their potential role in toxin production in algae. We outline key areas in phytoplankton host–parasite dynamics that are poorly understood, discuss the potential roles of chytrids in these areas, and highlight future research directions for the furthering of our knowledge regarding algal ecophysiology. The synthesis of current knowledge in these fields will help researchers develop new hypotheses to further our understanding of primary production in aquatic ecology, and thus enhance our understanding of aquatic ecology, for more effective management of aquatic ecosystems.     

Macroparasite Infections of Amphibians: What Can They Tell Us?

Understanding linkages between environmental changes and disease emergence in human and wildlife populations represents one of the greatest challenges to ecologists and parasitologists. While there is considerable interest in drivers of amphibian microparasite infections and the resulting consequences, comparatively little research has addressed such questions for amphibian macroparasites. What work has been done in this area has largely focused on nematodes of the genus Rhabdias and on two genera of trematodes (Ribeiroia and Echinostoma). Here, we provide a synopsis of amphibian macroparasites, explore how macroparasites may affect amphibian hosts and populations, and evaluate the significance of these parasites in larger community and ecosystem contexts. In addition, we consider environmental influences on amphibian-macroparasite interactions by exploring contemporary ecological factors known or hypothesized to affect patterns of infection. While some macroparasites of amphibians have direct negative effects on individual hosts, no studies have explicitly examined whether such infections can affect amphibian populations. Moreover, due to their complex life cycles and varying degrees of host specificity, amphibian macroparasites have rich potential as bioindicators of environmental modifications, especially providing insights into changes in food webs. Because of their documented pathologies and value as bioindicators, we emphasize the need for broader investigation of this understudied group, noting that ecological drivers affecting these parasites may also influence disease patterns in other aquatic fauna.     

Spatial and temporal factors affecting parasite genotypes encountered by hosts: Empirical data from American dog ticks (Dermacentor variabilis) parasitising raccoons (Procyon lotor)

The American dog tick (Dermacentor variabilis) is an important vector of numerous pathogens of humans and animals. In this study, we analysed population genetic patterns in D. variabilis at scales of the host individual (infrapopulation) and population (component population) to elucidate fine-scale spatial and temporal factors influencing transmission dynamics. We genotyped D. variabilis collected from raccoons (Procyon lotor) trapped in two habitat patches (located in Indiana, USA) which were spatially proximate (5.9 km) and limited in size (10.48 Ha and 25.47 Ha, respectively). Despite the fine spatial sampling scale, our analyses revealed significant genetic differentiation amongst component populations and infrapopulations (within each component population), indicating a non-random pattern of encountering tick genotypes by raccoons at both scales evaluated. We found evidence for male-biased dispersal in the ticks themselves (in one component population) and an age-bias in spatial scales at which raccoons encountered ticks in the environment. At the scale of the component population, our analyses revealed that raccoons encountered ticks from a limited number of D. variabilis family groups, likely due to high reproductive variance amongst individual ticks. Finally, we found evidence for a temporal effect with raccoons encountering ticks in the environment as “clumps” of related individuals. While the genetic structure of parasite populations are increasingly being investigated at small spatial scales (e.g. the infrapopulation), our data reveal that genetic structuring can originate at scales below that of the infrapopulation, due to the interaction between temporal and biological factors affecting the encounter of parasites by individual hosts. Ultimately, our data indicate that genetic structure in parasites must be viewed as a consequence of both spatial and temporal variance in host-parasite interactions, which in turn are driven by demographic factors related to both the host and parasite.     

Biomarker/bioindicator response profiles of organisms can help differentiate between sources of anthropogenic stressors in aquatic ecosystems

Aquatic ecosystems can be chronically stressed by multiple environmental factors which originate from a variety of point and non-point sources. In addition, these stressors may vary both spatially and temporally, and, combined with synergestic and cumulative interactions of these stressors, complicate the interpretation and evaluation of stress responses in organisms. To help identify and differentiate between sources of anthropogenic stressors in aquatic systems, a diagnostic approach based on exposure-response profiles in sentinel organisms was developed from the known effects of various anthropogenic activities on biological systems. To generate these exposure-effects profiles, biomarkers of exposure were plotted against bioindicators of corresponding effects for several major anthropogenic activities including petrochemical, pulp and paper, domestic sewage, mining operations, land-development, and agricultural activities. Biomarkers of exposure to environmental stressors varied widely depending on the type of anthropogenic activity involved. Bioindicator effects, however, including histopathological lesions, bioenergetic status, growth, reproductive impairment, and community-level endpoints were similar among several of the major anthropogenic activities because responses at these higher levels are less specific to stressors than are biomarkers. This approach appears useful for helping to identify and diagnose sources of stress in environments impacted by multiple stressors. By identifying the types and sources of environmental stressors impacting key components of biological systems, aquatic ecosystems can be more effectively protected, regulated, and managed to help improve and maintain environmental quality and ecosystem fitness.     

Differentiating Migration and Dispersal Processes for Pond-Breeding Amphibians

Abstract Understanding the movement of animals is critical to many aspects of conservation such as spread of emerging disease, proliferation of invasive species, changes in land-use patterns, and responses to global climate change. Movement processes are especially important for amphibian management and conservation as species declines and extinctions worldwide become ever more apparent. To better integrate behavioral and ecological data on amphibian movements with our use of spatially explicit demographic models and guide effective conservation solutions, I present 1) a synopsis of the literature regarding behavior, ecology, and evolution of movement in pond-breeding amphibians possessing biphasic life cycles to distinguish between migration and dispersal processes, 2) a working hypothesis of juvenile-based dispersal, and 3) a discussion of conservation issues that follow from distinguishing the spatial and temporal movements of amphibians at different scales. I define amphibian migration as intrapopulational, round-trip movements toward and away from aquatic breeding sites. Population-level management, in general, can be focused on spatial scales of <1.0 km with attention focused on adult population and juveniles that remain near the natal wetland. I define amphibian dispersal as interpopulational, unidirectional movements from natal sites to other breeding sites. Metapopulation- or landscape-level management can be focused on movements among populations at spatial scales >1.0–10.0 km and on importance of terrestrial connectivity. The ultimate goal of conservation for amphibians should be long-term regional persistence by addressing management issues at both local and metapopulation scales.     

土壤呼吸作用时空动态变化及其影响机制研究与展望

测定不同陆地生态系统土壤呼吸速率及其时空波动, 阐明其影响因子, 对于全球碳素平衡预算和全球变化潜在效应估计是最为基本的数据。然而, 有关土壤呼吸作用变异性及其影响因素的知识仍存在局限性, 一些关键的过程和机制还有待阐明。该文综述了近年来土壤呼吸作用时空动态规律、影响机制和模拟方面的研究进展, 指出环境因子和生物因子共同驱动着土壤呼吸作用的时间动态变化; 土壤呼吸作用在不同时间尺度上还具有明显的空间异质性, 这主要是植被覆盖、根系分布、主要的环境因素和土壤特性空间分布的异质性造成的。生物因子是影响土壤呼吸作用时空动态变化的主要因素之一。然而, 目前所使用的土壤呼吸作用经验模型通常利用土壤温度、土壤湿度或者两者的交互作用模拟土壤呼吸作用动态变化, 但没有考虑生物因子的影响, 这可能会导致明显的偏差和错误。因此, 为了精确估算土壤呼吸作用, 必须解决土壤呼吸作用小尺度上的空间变异性; 加强不同时间尺度上生物要素对土壤呼吸作用动态变化的影响研究; 除了气候因子外, 土壤呼吸作用经验模型应该纳入生物因子等其它影响因素作为变量, 用以提高模型模拟的正确性和准确性。     

Aquatic insects and water quality in Peñas Blancas watershed and reservoir

The aquatic insects have been used to evaluate water quality of aquatic environments. The population of aquatic insects and the water quality of the area were characterized according to the natural and human alterations present in the study site. During the monthly-survey, pH, DO, temperature, water level, DBO, PO4 and NO3 were measured. Biological indexes (abundance, species richness and the BMWP-CR) were used to evaluate the water quality. No relation between environmental and aquatic insects was detected. Temporal and spatial differences attributed to the flow events (temporal) and the presence of Pe?as Blancas reservoir (spatial). In the future, the investigations in Pe?as Blancas watershed need to be focused on determining the real influence of the flows, sediment release and the possible water quality degradation because of agriculture activities.     

Outbreeding depression varies among cohorts of Ipomopsis aggregata planted in nature

Outbreeding depression in progeny fitness may arise from disruption of local adaptation, disruption of allelic coadaptation, or a combination of these "environmental" and "physiological" mechanisms. Thus the minimum spatial scale over which outbreeding depression arises should depend on the spatial scale of gene dispersal and (with an environmental mechanism) of change in selection regimes. We previously reported substantial outbreeding depression in lifetime fitness of progeny resulting from crosses among parents separated by 100 m in natural populations of the herbaceous plant Ipomopsis aggregata. In this paper we explore the effect of crossing distance on fitness in two additional experiments begun in 1987 and 1990. We planted seed progeny derived from partial diallel crossing designs in randomized blocks in maternal environments and scored emergence of seedlings, survival, and eventual flowering of individuals over the subsequent six to eight years. Nested within each diallel design were crossing distances of 1 m, 10 m, and 100 m. Compared to 1-m and 10-m progeny, 100-m progeny of the 1987 diallel suffered a significant reduction in seedling emergence, and both 1-m and 100-m progeny that survived to flower achieved lower lambda-values on average than 10-m progeny. Total outbreeding depression suffered by 100-m relative to 10-m progeny was approximately 10%, compared to approximately 30% in our earlier study of I. aggregata. Progeny of 10-m crosses also outperformed 1-m and 100-m progeny of the 1990 diallel by approximately 5%, but no difference among crossing distance treatments was significant. Thus, the magnitude of outbreeding depression in 100-m crosses varied among experiments. This is not surprising given likely spatial and temporal variation in gene flow and selection regimes, different population histories, and different parental and progeny environments. Characterizing outbreeding depression on the shortest spatial scales over which it is expressed, as well as its variation and causes, is worthwhile because it promises to shed light on the earliest stages of angiosperm speciation.     

Importance of temporal variability at different spatial scales for diversity of floodplain aquatic communities

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Insights from paleoecology to community ecology

Ecologists and paleoecologists have become increasingly aware that the temporal and spatial scales of the two disciplines overlap considerably and provide complementary information. Pollen and macrofossil evidence from thousands of radiocarbon-dated sites worldwide indicate that species respond to environmental change independently, that communities are relatively open assemblages, and that instability and change characterize Quaternary environments and biotas. The extended temporal view provided by paleoecology also enables detection of the occurrence, intensity and changing frequency of periodic and unique events such as disturbances and environmental fluctuations. As these insights contribute to our understanding of a dynamic environment and biota, they may help to increase our ability to anticipate future changes in communities.     

Challenges to incorporating spatially and temporally explicit phenomena (hotspots and hot moments) in denitrification models

Denitrification, the anaerobic reduction of nitrogen oxides to nitrogenous gases, is an extremely challenging process to measure and model. Much of this challenge arises from the fact that small areas (hotspots) and brief periods (hot moments) frequently account for a high percentage of the denitrification activity that occurs in both terrestrial and aquatic ecosystems. In this paper, we describe the prospects for incorporating hotspot and hot moment phenomena into denitrification models in terrestrial soils, the interface between terrestrial and aquatic ecosystems, and in aquatic ecosystems. Our analysis suggests that while our data needs are strongest for hot moments, the greatest modeling challenges are for hotspots. Given the increasing availability of high temporal frequency climate data, models are promising tools for evaluating the importance of hot moments such as freeze-thaw cycles and drying/rewetting events. Spatial hotspots are less tractable due to our inability to get high resolution spatial approximations of denitrification drivers such as carbon substrate. Investigators need to consider the types of hotspots and hot moments that might be occurring at small, medium, and large spatial scales in the particular ecosystem type they are working in before starting a study or developing a new model. New experimental design and heterogeneity quantification tools can then be applied from the outset and will result in better quantification and more robust and widely applicable denitrification models.     

Spatial but not temporal co-divergence of a virus and its mammalian host

Co-divergence between host and parasites suggests that evolutionary processes act across similar spatial and temporal scales. Although there has been considerable work on the extent and correlates of co-divergence of RNA viruses and their mammalian hosts, relatively little is known about the extent to which virus evolution is determined by the phylogeographic history of host species. To test hypotheses related to co-divergence across a variety of spatial and temporal scales, we explored phylogenetic signatures in Andes virus (ANDV) sampled from Chile and its host rodent, Oligoryzomys longicaudatus. ANDV showed strong spatial subdivision, a phylogeographic pattern also recovered in the host using both spatial and genealogical approaches, and despite incomplete lineage sorting. Lineage structure in the virus seemed to be a response to current population dynamics in the host at the spatial scale of ecoregions. However, finer scale analyses revealed contrasting patterns of genetic structure across a latitudinal gradient. As predicted by their higher substitution rates, ANDV showed greater genealogical resolution than the rodent, with topological congruence influenced by the degree of lineage sorting within the host. However, despite these major differences in evolutionary dynamics, the geographic structure of host and virus converged across large spatial scales.     

Rainfall and drainage basin shape strongly control temporal and spatial variation of dissolved organic matter in a tropical lake

Limnology - Dissolved organic matter (DOM) is a central driver of many processes in aquatic environments. Here, we address the issue of spatial and temporal variations in DOM quantity and quality...