AGAMOUS subfamily MADS-box genes and the evolution of seed cone morphology in Cupressaceae and Taxodiaceae

In this comparative developmental genetics study, we test hypotheses based on fossil and morphological data on reproductive organ morphology and evolution in conifers--specifically, the ovule-bearing organ in Cupressaceae and Taxodiaceae. Genes homologous to the Arabidopsis gene AGAMOUS are expressed in ovuliferous scales of spruces (Picea) throughout development. Previous studies have shown that the AGAMOUS subfamily of MADS-box genes predates the split between angiosperms and gymnosperms, and that these genes have in part conserved functions in reproductive development among seed plants, especially in the specification of identity of the ovule-bearing organs. These data indicate that their expression in conifer families other than Pinaceae might be used as markers for organs homologous to the Pinaceae ovuliferous scale. Here we have isolated putative AGAMOUS orthologs from Cupressaceae and Taxodiaceae and analyzed their expression pattern in seed cones to test for the presence of morphological homologs of ovuliferous scales. Our results were not congruent with the hypothesis that the tooth of the Cryptomeria seed cone is homologous to the Picea ovuliferous scale. Likewise, the hypothesis that the bracts of Thujopsis and Juniperus contain fused ovuliferous scales was not supported. However, we found expression of AGAMOUS homologs in the sterile bracts of Cupressaceae seed cones at late developmental stages. This expression probably represents a novel gene function in these conifer families, since no corresponding expression has been identified in Pinaceae. Our study suggests that the evolutionary history of modern conifer cones is more diverse than previously thought.     

Frenelopsis alata and its microsporangiate and ovuliferous reproductive structures from the Cenomanian of Bohemia (Czech Republic, Central Europe)

The conifer, Frenelopsis alata (K. Feistmantel) E. Knobloch (Cheirolepidiaceae), occurring mostly in the Cenomanian of Europe, is revised on the basis of the type material. Its comparison with relevant species of Frenelopsis is discussed.The ovuliferous cone associated with the genus Frenelopsis is recorded for the first time. For the associated ovuliferous cones of Frenelopsis, a new genus, Alvinia, is introduced in a new combination for the type: Alvinia bohemica (Velenovsky) comb. n. Its association with Frenelopsis alata is based on the presence of Classopollis pollen adhering to ovuliferous cone scales, and the same type of pollen found in the microsporangiate cone of F. alata, the same cuticle pattern present on ovuliferous cones, sterile twigs and microsporangiate cones of F. alata, and also the co-occurrence of ovuliferous cones or their scales and sterile twigs of F. alata.Large ovuliferous cones of Alvinia bohemica are formed by helically arranged ovuliferous scales subtended by bracts. Each ovuliferous cone scale displays one or two seeds covered by a covering flap, and three appendages, which form distally a funnel-like structure lined in its inner part by long trichomes. Numerous pollen grains of Classopollis adhere to the trichomes, and the structure is considered to function as a protostigmatic area.The ovuliferous cones of Alvinia differ from similar cones of the Cheirolepidiaceae, Hirmeriella and Tomaxellia, mainly in a high state of unification of the ovuliferous cone scale, reduction of appendages and in a presence of the protostigmatic funnel-like structure.The ovuliferous cones, Alvinia bohemica, rarely occur intact, so it is assumed that they disintegrate when mature. It seems likely that they were not woody. This assumption is supported by the flattened appearance of cones and their cone scales in the sediment, their flexibility and the absence of massive coaly matter known from cones of the Taxodiaceae and Cupressaceae. It is proposed that this type of ovuliferous cone scale indicates a specialized type of pollination. In addition, it is suggested that cone scales enclosing seeds play an important role in propagation.     

Early Oligocene Callitris and Fitzroya (Cupressaceae) from Tasmania

This paper documents Early Oligocene fossilized foliage and ovulate cones from Lea River, Tasmania and identifies them as belonging to two extant southern hemisphere Cupressaceae genera, Callitris and Fitzroya. Most importantly, it sheds some light on evolutionary trends within Callitris, a genus with numerous extant Australian species and two extant New Caledonian species. Callitris has a very poor fossil record and, because of the present absence of a molecular data set that includes all species, its phylogeny remains somewhat ambiguous. Although Fitzroya foliage has previously been described from a number of Tasmanian sites, this is the first recording of fertile material. The ovulate cones of the Callitris and Fitzroya macrofossils are characterized by bract-scale complexes in two whorls of three and are subtended by scale-like leaves in whorls of three. The fossilized foliage specimens consist of scale-like leaves in whorls of three. These morphological characteristics are only exhibited by three extant southern hemisphere cupressaceous genera, Callitris, Actinostrobus, and Fitzroya. The assignment of the fossils to extinct Callitris and Fitzroya species is made by comparisons with species from these three extant genera. Although much of the Lea River flora are wet rainforest taxa, the Callitris fossils have characteristics of both wet- and dry-adapted extant species.     

The seed cone Eathiestrobus gen. nov.: Fossil evidence for a Jurassic origin of Pinaceae

? Premise of the study: Pinaceae and nonpinoid species are sister groups within the conifer clade as inferred from molecular systematic comparisons of living species and therefore should have comparable geological ages. However, the fossil record for the nonpinoid lineage of extant conifer families is Triassic, nearly 100 million years older than the oldest widely accepted Lower Cretaceous record for Pinaceae. An anatomically preserved fossil conifer seed cone described here extends the stratigraphic range of Pinaceae nearly 30 million years, thus reducing the apparent discrepancy between evidence from the fossil record and inferences from systematic studies of living species. ? Methods: Material was prepared as serial thin sections by the cellulose acetate peel technique, mounted on microscope slides, and viewed and photographed using transmitted light. ? Key results: A large cylindrical cone consisting of bract-scale complexes that diverge from the cone axis in a helical phyllotaxis has bracts and scales that separate from each other in the midregion and are of equal length and of nearly equal width. The cone has two inverted and winged seeds that are attached to the adaxial surface of each cone scale and, thus, represents an early member of the Pinaceae. ? Conclusions: Eathiestrobus mackenziei gen. et sp. nov. extends the fossil record for well-documented members of the family Pinaceae from the Lower Cretaceous to the Kimmeridgian Stage of the Upper Jurassic. This species also clarifies the set of characters that are diagnostic for seed cones of Pinaceae and reveals possible plesiomorphic characters for seed cones of the family.     

A taxodiaceous seed cone from the Triassic of Antarctica

A silicified seed cone is described from the lower Middle Triassic of A silicified seed cone is described from the lower Middle Triassic of Antarctica. The cone measures up to 3.4 cm long and 1.4 cm wide, and consists of helically arranged cone scales attached to a eustelic axis. Bract and ovuliferous scale are approximately of equal length and fused at the base. The bract is entire and vascularized by a single trace. The ovuliferous scale contains five distal lobes, each vascularized by a terete strand that divides to form a smaller trace to each of the five inverted ovules. Ovules are small and flattened with the three-parted integument attenuated into oppositely positioned lateral wings. The Triassic specimens are compared with both extant and fossil conifer seed cones and believed to have their closest affinities within the Taxodiaceae.     

柏科4个属(Fokienia、Cupressus、Chamaecyparis和Juniperus)植物雌球果的发育(英文)

通过扫描电镜和常规石蜡切片技术,观察了柏科4个属(Fokienia、Cupressus、Chamaecyparis和Juniperus)植物雌球果中胚珠的发育及苞片的结构变化。在所有研究的种类中,可育苞片腋部最先观察到的结构是一扁平的突起,并在其上分化出发育为胚珠的胚珠原基。在雌球果的发育过程中,未观察到独立的珠鳞发育。不同的种中,胚珠的数量和发育顺序有所不同,但苞片的发育是相似的。传粉前,苞片的结构与叶相似。传粉后,由于剧烈的居间生长,苞片发育为盾形,形成球形的球果。另外,在发育后期,苞片内维管系统变得复杂,并且在近轴面有反向的维管束发育。我们还对柏科植物雌球果的形态学特性及其可能的演化趋势进行了讨论。     

柏科4个属(Fokienia、Cupressus、Chamaeyparis 和Juniperus)植物雌球果的发育

通过扫描电镜和常规石蜡切片技术,观察了柏科4个属(Fokienia、Cupressus、Chamaeyparis 和Juniperus)植物雌球果中胚珠的发育及苞片的结构变化.在所有研究的种类中,可育苞片腋部最先观察到的结构是一扁平的突起,并在其上分化出发育为胚珠的胚珠原基.在雌球果的发育过程中,未观察到独立的珠鳞发育.不同的种中,胚珠怕数量和发育顺序有所不同,但苞片的发育是相似的.传粉前,苞片的结构与叶相似.传粉后,由于剧烈的居间维管束发育.我们还对柏科植物雌球果的形态学特性及其可能的演化趋势进行了讨论.     

Morphological "primary homology" and expression of AG-subfamily MADS-box genes in pines, podocarps, and yews

The morphological variation among reproductive organs of extant gymnosperms is remarkable, especially among conifers. Several hypotheses concerning morphological homology between various conifer reproductive organs have been put forward, in particular in relation to the pine ovuliferous scale. Here, we use the expression patterns of orthologs of the ABC-model MADS-box gene AGAMOUS (AG) for testing morphological homology hypotheses related to organs of the conifer female cone. To this end, we first developed a tailored 3'RACE procedure that allows reliable amplification of partial sequences highly similar to gymnosperm-derived members of the AG-subfamily of MADS-box genes. Expression patterns of two novel conifer AG orthologs cloned with this procedure-namely PodAG and TgAG, obtained from the podocarp Podocarpus reichei and the yew Taxus globosa, respectively-are then further characterized in the morphologically divergent female cones of these species. The expression patterns of PodAG and TgAG are compared with those of DAL2, a previously discovered Picea abies (Pinaceae) AG ortholog. By treating the expression patterns of DAL2, PodAG, and TgAG as character states mapped onto currently accepted cladogram topologies, we suggest that the epimatium-that is, the podocarp female cone organ previously postulated as a "modified" ovuliferous scale-and the canonical Pinaceae ovuliferous scale can be legitimally conceptualized as "primary homologs." Character state mapping for TgAG suggests in turn that the aril of Taxaceae should be considered as a different type of organ. This work demonstrates how the interaction between developmental-genetic data and formal cladistic theory could fruitfully contribute to gymnosperm systematics.     

REPRODUCTIVE BIOLOGY OF THE CERRO CUADRADO (JURASSIC) FOSSIL CONIFERS: PARARAUCARIA PATAGONICA

Seventy-two silicified cone specimens of Pararaucaria patagonica Wieland from the Cerro Cuadrado (Jurassic) petrified forest in Patagonia were studied by use of thin sections and reflected light. Traces from the cone axis stele to the bract and ovuliferous scale are separate at their origins. In cross section the abaxially concave ovuliferous scale trace and massive circular bract trace branch half-way out into the cone-scale complex. Two triangular-shaped bundles of fibers follow the scale trace into the laminar part of the ovuliferous scale. Both surfaces of the ovuliferous scale possess hairs which may have assisted in cone closure. Cones typically contain one flattened, winged seed per ovuliferous scale. Multi-layered seed integuments are represented by an inner fleshy layer of large cells filled with a black amorphous material, a sclerotesta consisting of wedges or fan-shaped groups of sclereids oriented at right angles to the seed surface, and a thin, often crushed fleshy layer. Seed wings consist of anastomosing, branched cells resembling glandular hairs and containing many intercellular spaces. Well-preserved polycotyledonous embryos containing up to eight cotyledons are present in several cones. Tissues of the embryo including the shoot apex, calyptroperiblem, hypocotyl, and cotyledons are described. On the basis of anatomical and morphological features, specimens of P. patagonica are compared to members of both extant and extinct families of conifers including the Araucariaceae, Taxodiaceae, Pinaceae, Cupressaceae, and Cheirolepidaceae.     

Female Cone Development in Fokienia, Cupressus, Chamaecyparis and Juniperus （Cupressaceae）

The ontogeny and vascular systems of female cones of the Fokienia, Oupressus, Ohamaecyparis and Juniperus were investigated in detail using scanning electron microscopy (SEM) and conventional light microscopy. In the species examined, in the axils of the bracts, the first recognizable structure was a broad meristematic swelling, from which ovules developed. No ovuliferous scales developed during the ontogeny of the female cones. The number of ovules and ovule developing sequence displayed considerable variation in different species. However, development of the bracts was similar in all of the investigated species. Following pollination, the foliage-like bracts became peltate bract scales due to intercalary expansion, and global cones formed. In addition, the vascular system in the bract scales became intricate, and inverted vascular bundles emerged in the adaxial of the mature bracts. Based on these observations, a morphological interpretation and possible evolutionary trend of the Cupressaceae female reproductive structures was discussed.     

Elatides sandaolingensis n. sp. (Cupressaceae sensu lato) — A new fossil conifer with cones from the Middle Jurassic of Xinjiang,northwestern China

Here we describe a new conifer fossil, Elatides sandaolingensis Z.X. Wang and B.N. Sun n. sp., from the Middle Jurassic Xishanyao Formation in the Turpan-Hami Basin, Xinjiang Uygur Autonomous Region, northwestern China. The materials consist of compressions represented by well-preserved leafy shoots, pollen cones, and seed cone. Leaves are characterized by long triangular shapes, with straight apex and entire margins, and two stomatal bands on the abaxial surface. Pollen cones are terminally disposed on the ultimate leafy shoots, borne singly or in clusters. Pollen sacs are long-oval shaped, with three pollen sacs fused together. Pollen grains are spherical and have small germinal papilla and few wrinkles. The seed cone is oblong, with more than 35 helically arranged bract-scale complexes, which are characterized by long-oval shape and triangular apex. Compared with the extant nine genera of Taxodiaceous Cupressaceae in the morphology of seed cone and pollen cones, the present fossil consistently shares many characteristics with the extant genus Cunninghamia, but differs in other aspects. After being compared with the reported fossil records of the fossil plants, the current species is found to be different from any known species; thus, the present fossil is referred to as a new species of Elatides. From the similarity between the present fossil and Cunninghamia, it can be inferred that there may be a genetic relationship between these two genera. Additionally, the new species has thin cuticles and slightly sunken stomata, which can provide evidence indicating that the climate of the Turpan-Hami Basin in Middle Jurassic might have been warm and humid. By studying the geological history and geographical distribution of Elatides, it can be inferred that this genus may have originated in Switzerland, and it was migrated from Xinjiang to North and South China through the Ural Mountains.     

Reconstruction of the Jurassic conifer Sewardiodendron laxum (Taxodiaceae)

Compressed seed cones and pollen cones of Sewardiodendron laxum are described from the Middle Jurassic of Yima, Henan, central China. They are either organically attached to or associated with leafy shoots. Seed cones are terminally borne. Each cone is ovate to elongated, up to 6.5 cm long and 3.5 cm wide, and consists of a stout axis and numerous helically arranged bract-scale complexes. The bract protrudes beyond and is partially fused with the reduced ovuliferous scale. The ovuliferous scale bears approximately six inverted, small, and flattened seeds. Pollen cones are borne in terminal clusters. Microsporophylls are helically arranged, each bearing three abaxial, basally fused pollen sacs. Pollen is assaccate, rounded, and with an inconspicuous pore. Morphological, structural, and cuticular features of seed cones, pollen cones, and leafy shoots of S. laxum are compared with those of fossil and extant conifers. S. laxum is included in Taxodiaceae and believed to have its closest affinities with a Mesozoic conifer Elatides and a group of Cunninghamia-like conifers. It is reconstructed as a half-evergreen tree that lived in a humid, warm-temperate climate.     

Three genome-based phylogeny of Cupressaceae s.l.: further evidence for the evolution of gymnosperms and Southern Hemisphere biogeography

Phylogenetic information is essential to interpret the evolution of species. While DNA sequences from different genomes have been widely utilized in phylogenetic reconstruction, it is still difficult to use nuclear genes to reconstruct phylogenies of plant groups with large genomes and complex gene families, such as gymnosperms. Here, we use two single-copy nuclear genes, together with chloroplast and mitochondrial genes, to reconstruct the phylogeny of the ecologically-important conifer family Cupressaceae s.l., based on a complete sampling of its 32 genera. The different gene trees generated are highly congruent in topology, supporting the basal position of Cunninghamia and the seven-subfamily classification, and the estimated divergence times based on different datasets correspond well with each other and with the oldest fossil record. These results imply that we have obtained the species phylogeny of Cupressaceae s.l. In addition, possible origins of all three polyploid conifers were investigated, and a hybrid origin was suggested for Cupressus, Fitzroya and Sequoia. Moreover, we found that the biogeographic history of Cupressaceae s.l. is associated with the separation between Laurasia and Gondwana and the further break-up of the latter. Our study also provides new evidence for the gymnosperm phylogeny.     

Branching habit and the allocation of reproductive resources in conifers

Background and Aims Correlated relationships between branch thickness, branch density, and twig and leaf size have been used extensively to study the evolution of plant canopy architecture, but fewer studies have explored the impact of these relationships on the allocation of reproductive resources. This study quantifies pollen cone production in conifers, which have similar basic reproductive biology but vary dramatically in branching habit, in order to test how differences in branch diameter influence pollen cone size and the density with which they are deployed in the canopy. Methods Measurements of canopy branch density, the number of cones per branch and cone size were used to estimate the amount of pollen cone tissues produced by 16 species in three major conifer clades. The number of pollen grains produced was also estimated using direct counts from individual pollen cones. Key Results The total amount of pollen cone tissues in the conifer canopy varied little among species and clades, although vegetative traits such as branch thickness, branch density and pollen cone size varied over several orders of magnitude. However, branching habit controls the way these tissues are deployed: taxa with small branches produce small pollen cones at a high density, while taxa with large branches produce large cones relatively sparsely. Conclusions Conifers appear to invest similar amounts of energy in pollen production independent of branching habit. However, similar associations between branch thickness, branch density and pollen cone size are seen across conifers, including members of living and extinct groups not directly studied here. This suggests that reproductive features relating to pollen cone size are in large part a function of the evolution of vegetative morphology and branching habit.     

New genus of Cupressaceae from the Upper Cretaceous of Patagonia (Argentina) fills a gap in the evolution of the ovuliferous complex in the family

The conifer family Cupressaceae encompasses seven subfamilies. Five of them were once considered to constitute the family Taxodiaceae, later eliminated because of its paraphyletic nature but remaining as an informal category for early-diverging Cupressaceae lineages. Among the taxodiaceous subfamilies, Athrotaxoideae shows a unique morphology in its ovuliferous complexes (OCs) and a phylogenetically unexplored fossil record. We describe the new genus and species Patagotaxodia lefipanensis, based on OC adpressions associated with leafy branches collected at the Maastrichtian section of the Lefipán Formation (Patagonia, Argentina), and we refer it to Athrotaxoideae. We include Patagotaxodia in total evidence phylogenetic analysis to test its affinity, and we recover it within the subfamilies Athrotaxoideae or Cunninghamioideae. However, we argue that the characters supporting the athrotaxoid affinity are more meaningful in a taxodiaceous systematic context. This placement is also supported by taxon inclusion-exclusion experiments. We discuss the position of other Cretaceous athrotaxoid records. With basis on the morphological insights provided by the OC morphology of extant and extinct Athrotaxoideae, we study the evolution of the OC morphology in the family in a phylogenetic context and discuss the results in the light of the fossil record of the family. We discuss how and when the different morphologies appeared in the family. Based on phylogenetic, temporal, morphological, and ontogenetic evidence, we conclude that the OC morphology shown by the subfamily Athrotaxoideae is intermediate between two of the most common morphologies within extant and extinct Cupressaceae species, one of which would show adaptative advantages over basal morphologies.     

A new species of the extinct genus Austrohamia (Cupressaceae s.l.) in the Daohugou Jurassic flora of China and its phytogeographical implications

Abstract A new conifer, Austrohamia acanthobractea, sp. nov., is described from the Jurassic Daohugou flora, Inner Mongolia Autonomous Region, China. The material consists of impressions represented by well‐preserved leafy twigs and branches as well as ovulate cones. Leafy shoots with at least two orders of branching; ultimate branchlets alternate or sub‐opposite with helically arranged leaves, decurrent at base with distal rounded tip; dorsiventrally flattened and univeined. Ovuliferous cones elliptical, less than 1 cm long, terminally borne on ultimate and penultimate branches, composed of helically arranged bracts with ovules disposed on their adaxial surfaces. The presence of similar, if not identical taxa, on both sides of the Pacific indicates the cosmopolitan distribution of primitive Cupressaceae between East Asia (Eurasia) and South America in the Pangaea.     

Phylogenetic Analysis of the Family Taxodiaceae

In the present paper,both cladistic analysis and phenetic analysis were conducted to evaluate the phylogenetic relationships of the Taxodiaceae based on an extensive literature review and study of herbarium． In the cladistic analysis,the Sciadopityaceae was chosen as outgroup．The polarity of characters was determined mainly according to outgroup comparison,fossil evidence and generally accepted viewpoints of morphological evolution．By the result of compatibility analysis,character 2(leaf type),which possessed a much higher coefficient than others whether or not its polarity was altered,was deleted． Finally,a data matrix consisting of all the extant nine genera and 24 characters was analyzed using Maximal Same Step Method,Synthetic Method,Evolutionary Extremal Aggregation Method and Minimal Parallel Evolutionary Method,and four cladograms were generated,of which only the most parsimonious one (Fig．1)was presented for discussion. The cladogram shows that the Taxodiaceae are assorted along five lines of evolution： 1)Metasequoia;2)Sequoiadendron,Sequoia;3)Cryptomeria;4)Glyptostrobus and Taxodium;5)Cunninghamia,Athrotaxis and Taiwania． Ten genera(including Sciadopitys)and 59 characters were used in the phenetic analysis．The phenogram(Fig．2)indicates that Sciadopitys is a very distinct group with remote affinity to the other genera,and the Taxodiaceae are divided into four groups：1)Sequoia,Sequoiadendron;2)Athrotaxis,Cunninghamia and Taiwania;3)Cryptomeria,Glyptostrobus and Taxodium;4)Metasequoia． Based primarily on the result of cladistics,with reference to that of phenetics,the main conclusions were drawn as follows：(1)Generic relationships：Cryptomeria should be considered the most primitive genus in the extant groups of the Taxodiaceae. Glyptostrobus and Taxodium, close to Cryptomeria, are sister taxa and relatively primitive groups. Sequoiadendron and Sequoia are closely related and intermediate advanced. Metasequoia is a more or less isolated taxon, relatively close to Sequoiadendron and Sequoia. Cunninghamia. Athrotaxis and Taiwania might represent a single lineage and form a very advanced group, of which Taiwania may be the most specialized. (2) Systematic treatments: The authors support the viewpoint that Sciadopitys should be treated as an independent family, and suggest that the Taxodiaeae should be divided into five tribes. Systematic arrangements are as follows: Taxodiaceae Warming Trib. 1. Cryptomerieae Vierhapper Gen. 5. Sequoia Endl. Gen. 1. Cryptomeria D. Don Trib. 4. Metasequoieae Pilger et Melchior Trib. 2. Taxodieae Benth. et Hook. Gen. 6. Metasequoia Miki ex Hu et Cheng Gen. 2. Glyptostrobus Endl. Trib. 5. Cunninghamieae Zucc. Gen. 3. Taxodium Rich. Gen. 7. Cunninghamia R. Br. Trib. 3. Sequoieae Wettstein Gen. 8. Athrotaxis D. Don Gen. 4. Sequoiadendron Buchholz Gen. 9. Taiwania Hayata     

MORE EVIDENCE FOR CONIFER DIVERSITY IN THE UPPER TRIASSIC OF NORTH CAROLINA

An ovulate strobilus from the Upper Triassic Deep River Basin, North Carolina, has helically arranged, loosely aggregated, elongated, spatulate bracts with axillary ovule-bearing appendages with about 8–10 ovules attached in two lateral rows, with outwardly directed micropyles. The axillary ovuliferous appendage is homologous with the voltzialean fertile dwarf shoot, but probably not directly evolved from it. More credible is a suggested origin from a completely fertile axillary appendage such as that of the Lower Permian Trichopitys. The occurrence of this cone, Metridiostrobus palissyaeoides, gen. and sp. nov., along with Compsostrobus neotericus and Voltzia andrewsii, reflects considerable diversity among conifer ovulate cones during the Upper Triassic.