Spirochete-like cells in a Dominican amber Ambylomma tick (Arachnida: Ixodidae)

Amber preserves microscopic, soft-bodies organisms and is a good medium in which to trace the evolution of pathogen–vector associations. Spirochetes-like cells (Spirochaetales: Spirochaetaceae) in the hemocoel and lumen of the alimentary tract of a larva tick (Amblyomma sp. Arachnida: Ixodidae) in Dominican amber are described in the collective fossil genus and species, Palaeoborrelia dominicanan. gen., n. sp. The size and shape of the fossil spirochetes closely resemble those of present-day Borrelia species. This discovery represents the first record of spirochete-like cells associated with fossil ticks.     

云南保山上新统黄背栎Quercus Pannosa Hand.-Mazz.角质层特征及古环境意义

在滇西保山上新统首次发现了黄背栎(Quercuspannosa)压型化石,并分析了角质层构造。其特征主要为:上表皮无气孔器,表皮细胞为不规则形五边形,垂周壁微弯曲,脉络为网格状,无毛基;下表皮具环列型气孔器,表皮细胞为不规则形五边形,垂周壁微弯曲,脉络为五边形的网格状,具毛基,毛的根部由多细胞组成,毛基部的细胞特化成辐射状。利用现存最近亲缘种(NLRspecies)原理,并比较化石和现生Q.pannosa角质层特征,推断上新世Q.pannosa在羊邑生长的古环境比现生Q.pannosa生存的冷湿气候相对干旱,且化石Q.pannosa为近原地埋藏。     

First fossil record of stalked spermatophores with sperm (Collembola: Hexapoda)

Spermatozoa and stalked spermatophores in Baltic amber represent the first report of these reproductive structures in the fossil record. A comparison of this material with sperm and simple stalked spermatophores from extant invertebrates indicates that the fossil structures originated from a springtail (Collembola: Hexapoda). This conclusion is supported by the presence of a female springtail, Sminthurus longicornis Kock and Berendt (Sminthuridae: Symphypleona), in the same piece of amber. This specimen, which appears to have been molting at the time of death, is adjacent to objects interpreted as springtail eggs. The present find establishes the existence of the indirect method of sperm transfer by the late Eocene (40 Ma).     

Prokaryotes in the Early Precambrian

Bacteria and biofilms are frequently preserved in the fossil record, they occur in many sedimentary and volcanogenic-sedimentary rocks. It is highly probable that they always participate in weathering, transfer of matter, sedimentation, and diagenesis of deposits.     

Phylogeny and temporal diversification of darters (Percidae: Etheostomatinae)

Discussions aimed at resolution of the Tree of Life are most often focused on the interrelationships of major organismal lineages. In this study, we focus on the resolution of some of the most apical branches in the Tree of Life through exploration of the phylogenetic relationships of darters, a species-rich clade of North American freshwater fishes. With a near-complete taxon sampling of close to 250 species, we aim to investigate strategies for efficient multilocus data sampling and the estimation of divergence times using relaxed-clock methods when a clade lacks a fossil record. Our phylogenetic data set comprises a single mitochondrial DNA (mtDNA) gene and two nuclear genes sampled from 245 of the 248 darter species. This dense sampling allows us to determine if a modest amount of nuclear DNA sequence data can resolve relationships among closely related animal species. Darters lack a fossil record to provide age calibration priors in relaxed-clock analyses. Therefore, we use a near-complete species-sampled phylogeny of the perciform clade Centrarchidae, which has a rich fossil record, to assess two distinct strategies of external calibration in relaxed-clock divergence time estimates of darters: using ages inferred from the fossil record and molecular evolutionary rate estimates. Comparison of Bayesian phylogenies inferred from mtDNA and nuclear genes reveals that heterospecific mtDNA is present in approximately 12.5% of all darter species. We identify three patterns of mtDNA introgression in darters: proximal mtDNA transfer, which involves the transfer of mtDNA among extant and sympatric darter species, indeterminate introgression, which involves the transfer of mtDNA from a lineage that cannot be confidently identified because the introgressed haplotypes are not clearly referable to mtDNA haplotypes in any recognized species, and deep introgression, which is characterized by species diversification within a recipient clade subsequent to the transfer of heterospecific mtDNA. The results of our analyses indicate that DNA sequences sampled from single-copy nuclear genes can provide appreciable phylogenetic resolution for closely related animal species. A well-resolved near-complete species-sampled phylogeny of darters was estimated with Bayesian methods using a concatenated mtDNA and nuclear gene data set with all identified heterospecific mtDNA haplotypes treated as missing data. The relaxed-clock analyses resulted in very similar posterior age estimates across the three sampled genes and methods of calibration and therefore offer a viable strategy for estimating divergence times for clades that lack a fossil record. In addition, an informative rank-free clade-based classification of darters that preserves the rich history of nomenclature in the group and provides formal taxonomic communication of darter clades was constructed using the mtDNA and nuclear gene phylogeny. On the whole, the appeal of mtDNA for phylogeny inference among closely related animal species is diminished by the observations of extensive mtDNA introgression and by finding appreciable phylogenetic signal in a modest sampling of nuclear genes in our phylogenetic analyses of darters.     

Earliest fossil record of bacterial-cyanobacterial mat consortia: the early Silurian Passage Creek biota (440 Ma, Virginia, USA)

Cyanobacteria in terrestrial and aquatic habitats are frequently associated with heterotrophic bacteria, and such associations are most often metabolically interactive. Functionally, the members of such bacterial–cyanobacterial consortia benefit from diverse metabolic capabilities of their associates, thus exceeding the sum of their parts. Such associations may have been just as ubiquitous in the past, but the fossil record has not produced any direct evidence for such associations to date. In this paper, we document fossil bacteria associated with a macrophytic cyanobacterial mat in the early Silurian (Llandovery) Massanutten Sandstone of Virginia, USA. Both the bacterial and the cyanobacterial cells are preserved by mineral replacement (pyrite subsequently replaced by iron oxyhydroxides) within an amorphous carbonaceous matrix which represents the common exopolysaccharide investment of the cyanobacterial colony. The bacteria are rod-shaped, over 370 nm long and 100 nm in diameter, and occur both as isolated cells and as short filaments. This occurrence represents the oldest fossil evidence for bacterial–cyanobacterial associations, documenting that such consortia were present 440 Ma ago, and revealing the potential for them to be recognized deeper in the fossil record.     

The dormant buds of Rhabdopleura compacta (Hemichordata)

Rhabdopleura has an overwintering stage that consists of two layers of cells surrounding a central yolk mass. This cellular part is surrounded by a thick electron dense capsule which is secreted by the bud itself. The capsule is probably impervious and protective to its contents. Blood vessels join the buds to the zooids of the colony. They form the probable route of transfer of yolk from the zooids to the dormant bud. The capsule of the dormant bud has some structural features in common with the black stolon of the adult zooids. The black stolon is probably formed in a manner similar to that which made the fusellar fabric of the periderm of fossil graptolities.     

Tetracentron Wood from the Miocene of Noto Peninsula,Central Japan,with a short revision of homoxylic fossil woods

A vesselless fossil wood was discovered in the Miocene Yanagida Formation in the Noto Peninsula, central Japan. This fossil has distinct growth rings with gradual transition from the early- to the latewood ; tracheids, which are called 'usual traeheids' here, constitute the ground mass of the wood and have typical scalariform bordered pits on radial walls in the earlywood and circular sparse pits on those in the latewood ; rays are 1\2-4 cells wide and heterogeneous with low to high uniseriate wings; axial parenchyma strands are scattered in the latewood. This wood has a peculiar feature; sporadic radial files of broad tracheids whose tangential walls have crowded alternate bordered pits. The radial walls have crowded half-bordered pits to ray cells, but no pits to the usual tracheids. Among all of the extant and extinct angiosperms and gymnosperms, these unusual tracheids occur only in Tetracentron. From these features, we refer the fossil to the extant genus Tetracentron, and name it T. japonoxylum. A revision of homoxylic woods is made for comparision with the present fossil. Tetracentron japonoxylum is the only fossil wood of Tetracentron.     

Palaeontological evidence of membrane relationship in step-by-step membrane fusion

Studies on membrane fusion in living cells indicate that initiation of membrane fusion is a transient and hard to capture process. Despite previous research, membrane behaviour at this point is still poorly understood. Recent palaeobotanical research has revealed snapshots of membrane fusion in a 15-million-year-old fossil pinaceous cone. To reveal the membrane behaviour during the fusion, we conducted more observations on the same fossil material. Several discernible steps of membrane fusion have been fixed naturally and observed in the fossil material. This observation provides transmission electron microscope (TEM) images of the transient intermediate stage and clearly shows the relationship between membranes. Observing such a transient phenomenon in fossil material implies that the fixing was most likely accomplished quickly by a natural process. The mechanism behind this phenomenon is clearly worthy of further enquiry.     

内蒙古早二叠世早期南洋杉型木属一新种

报道了一种具混合型纹孔（互列式纹孔和对列式纹孔）的化石本。化石木产自内蒙古乌达矿区老石旦矿附近太原组上部,地质时代为早二叠世早期。经比较,确认为南洋杉型木属（Ａｒａｕｃａｒｉｏｘｙｌｏｎ Ｋｒａｕｓ）一种新;老石旦南洋杉型木（Ａｒａｕｃａｒｉｏｘｙｌｏｎ ｌａｏｓｈｉｄａｎｅｎｓｅ ｓｐ．ｎｏｖ．）．根据混合型纹孔的存在及其他特征,认为新种可能代表了一种原始的松杉类植物的木材化石。主要特征：仅保存     

Laurentian Great Lakes Phytoplankton and Their Water Quality Characteristics,Including a Diatom-Based Model for Paleoreconstruction of Phosphorus

Recent shifts in water quality and food web characteristics driven by anthropogenic impacts on the Laurentian Great Lakes warranted an examination of pelagic primary producers as tracers of environmental change. The distributions of the 263 common phytoplankton taxa were related to water quality variables to determine taxon-specific responses that may be useful in indicator models. A detailed checklist of taxa and their environmental optima are provided. Multivariate analyses indicated a strong relationship between total phosphorus (TP) and patterns in the diatom assemblages across the Great Lakes. Of the 118 common diatom taxa, 90 (76%) had a directional response along the TP gradient. We further evaluated a diatom-based transfer function for TP based on the weighted-average abundance of taxa, assuming unimodal distributions along the TP gradient. The r² between observed and inferred TP in the training dataset was 0.79. Substantial spatial and environmental autocorrelation within the training set of samples justified the need for further model validation. A randomization procedure indicated that the actual transfer function consistently performed better than functions based on reshuffled environmental data. Further, TP was minimally confounded by other environmental variables, as indicated by the relatively large amount of unique variance in the diatoms explained by TP. We demonstrated the effectiveness of the transfer function by hindcasting TP concentrations using fossil diatom assemblages in a Lake Superior sediment core. Passive, multivariate analysis of the fossil samples against the training set indicated that phosphorus was a strong determinant of historical diatom assemblages, verifying that the transfer function was suited to reconstruct past TP in Lake Superior. Collectively, these results showed that phytoplankton coefficients for water quality can be robust indicators of Great Lakes pelagic condition. The diatom-based transfer function can be used in lake management when retrospective data are needed for tracking long-term degradation, remediation and trajectories.     

Combining phylogenomics and fossils in higher-level squamate reptile phylogeny: molecular data change the placement of fossil taxa

Molecular data offer great potential to resolve the phylogeny of living taxa but can molecular data improve our understanding of relationships of fossil taxa? Simulations suggest that this is possible, but few empirical examples have demonstrated the ability of molecular data to change the placement of fossil taxa. We offer such an example here. We analyze the placement of snakes among squamate reptiles, combining published morphological data (363 characters) and new DNA sequence data (15,794 characters, 22 nuclear loci) for 45 living and 19 fossil taxa. We find several intriguing results. First, some fossil taxa undergo major changes in their phylogenetic position when molecular data are added. Second, most fossil taxa are placed with strong support in the expected clades by the combined data Bayesian analyses, despite each having >98% missing cells and despite recent suggestions that extensive missing data are problematic for Bayesian phylogenetics. Third, morphological data can change the placement of living taxa in combined analyses, even when there is an overwhelming majority of molecular characters. Finally, we find strong but apparently misleading signal in the morphological data, seemingly associated with a burrowing lifestyle in snakes, amphisbaenians, and dibamids. Overall, our results suggest promise for an integrated and comprehensive Tree of Life by combining molecular and morphological data for living and fossil taxa.     

A New Species of Araucarioxylon Kraus from the Early Early Permian,Nei Mongol,China

A kind of silicified fossil wood with mixed pits on the radial tracheid wall is described. The fossil wood was collected from the top of Taiyuan Formation (early Early Permian) in Wuda Mining District, Nei Mongol. Compared with the Paleozoic fossil woods in the world, it is put into Araucarioxylon Kraus and named as A. laoshidanense sp. nov. Based on the character of possessing mixed pittings (alternate and opposite pittings) on the radial tracheid wall, the fossil wood is believed to be one of the unknown primitive conifers.Diagnosis of the new species: Only secondary xylem preserved and consisting of axial tracheids and rays. Growth ring boundary, resin duct and axial parenchyma absent. One to Four (commonly 2or3) seriates of bordered pits mostly alternate but sometimes opposite）on the radial tracheid wall. One to Four (commonly1, rarely2 to 4) Cupressoid pits in each cross-field. Rays usually uniseriate, sometimes partly-biseriate and 2 to 39 (mainly3-5) cells high.     

A chemical signal possibly related to physiology in fossil cells detected by energy dispersive X-ray microanalysis

Energy dispersive X-ray microanalysis (EDXMA) is a widely used tool employed to detect elemental composition and its spatial distribution in a sample without causing damage. Charcoalified cytoplasm is a new type of fossil material that came to people's attention only recently. In this paper, EDXMA is used for the first time to detect the spatial elemental distribution in charcoalified cytoplasm of two fossil plants that are more than 100 million years old. The results demonstrate certain elemental distribution patterns within charcoalified cytoplasm and the surrounding cell walls. Based on the results from cytological studies of extant material, the heterogeneous spatial elemental distribution within the charcoalified cytoplasm has the potential to be related to the maturation of cells, the presence of certain organelles, and the physiology of these organelles. This is the first chemical signal detected in cytoplasm residue that can possibly be related to plant physiology. This paves the way for further research on fossil cytoplasm, which will better our understanding on the physiology of fossil plants.     

Is Palaeospondylus gunni a fossil larval lungfish? Insights from Neoceratodus forsteri development

The enigmatic Devonian fossil Palaeospondylus gunni was identified as a larval form, metamorphosing into the lungfish Dipterus valenciennesi. Morphological features used to identify P. gunni as a larval lungfish include enlarged cranial ribs, rudimentary limb girdles, and absence of teeth. However, this combination of features does not characterize the extant lungfish Neoceratodus forsteri, even at very young stages, nor early stages of Devonian and younger fossil lungfish. Absence of teeth is problematic because early ontogenetic stages of fossil and living lungfish possess full dentitions including marginal teeth. Also problematic are cranial ribs as a defining character of lungfish, as these also occur in certain actinopterygians.It is argued that Neoceratodus is an obligate neotene (reproductively mature larva), with the implication that metamorphosis was a feature of the ontogeny of early lungfish. Pedomorphic characters have been recognized in Neoceratodus and other post-Devonian lungfish, including large cells and correspondingly large genome size; these latter characters correlate with neoteny in salamanders. Small cells preserved in fossil bone suggest that Devonian lungfish had a smaller genome than post-Devonian lungfish, implying that they were not neotenic. As fossil lungfish cell sizes (and genomes) increased in the late Paleozoic, the diversity of lungfish morphologies decreased, so that taxa like Sagenodus and Conchopoma show morphological similarity to Neoceratodus, marking a point in phylogeny at which metamorphosis was potentially lost. Since ancestral larval characters are retained in neotenic adults, we predict that Devonian larvae should resemble these post-Devonian taxa, a prediction which Palaeospondylus does not fulfill.     

The first record of fossil Vitaceae wood from the Southern Hemisphere,a new combination for Vitaceoxylon ramunculiformis,and reappraisal of the fossil record of the grape family (Vitaceae) from the Cenozoic of Australia

Austrovideira dettmannaegen. & sp. nov. from the early Oligocene Capella Flora in central Queensland is the first fossil Vitaceae wood described from the Southern Hemisphere. A new combination, Stafylioxylon ramunculiformis (Poole & Wilkinson) Pace & Rozefelds for a Northern Hemisphere fossil wood is also proposed. Austrovideira and Stafylioxylon share with Vitaceoxylon secondary xylem with two diameter classes of vessels, wide vessels usually solitary, narrow vessels forming radial chains, very wide and tall rays, scanty paratracheal parenchyma and septate fibres. Austrovideira differs from Vitaceoxylon in having scalariform intervessel pits and homocellular rays composed exclusively of procumbent cells. This combination of features is seen in the Ampelocissus‐Vitis clade, and a clearly stratified phloem with fibre bands alternating with all other axial elements and phloem rays rapidly dilating towards the periderm is restricted to Parthenocissus and Vitis. Stafylioxylon shares with Austrovideira the presence of scalariform intervessel pits but it differs from that genus in both ray composition and bark anatomy, as it lacks a stratified phloem. These fossil wood genera demonstrate that the lianescent habit in the Vitaceae was established by the Eocene in the Northern Hemisphere and by the Oligocene in the Southern Hemisphere. The pollen and seed fossil record shows that the Vitaceae were in Australia by the Eocene and fossil seeds suggest that the family had radiated by this time. The Oligocene Capella flora with two seed taxa and fossil wood (Austrovideira) provides further evidence of an Australian radiation. The fossil evidence, suggests a significant Gondwanic history for the family.     

The anatomy of the hypocotyls of Ceriops Arnott (Rhizophoraceae), Recent and fossil

Fragments of the hypocotyls of the fossil Ceriops cantiensis Chandler from the Lower Tertiary of southern England and the living Ceriops tagal (Perr.) C.B. Rob. and Ceriops decandra (Griff.) Ding How have been examined by SEM. The living material has also been studied by light microscopy. Great similarity has been revealed between homologous tissues of the Recent and fossil material: the palisade-like epidermis; a two-zoned cortex composed of an outer region of compact collenchymatous tissue and an inner region of aerenchyma; phloem fibres; a large number of small vascular bundles, only some of which have xylem; few xylem elements; similarity of xylem elements; pith region of roundish to shortly oblong cells forming long, bead-like rows in longitudinal view. Evidence is also presented of similarity between Recent and fossil starch grains.     

INVESTIGATIONS OF ANGIOSPERMS FROM THE EOCENE OF NORTH AMERICA: STIPULATE LEAVES OF THE RUBIACEAE INCLUDING A PROBABLE POLYPLOID POPULATION

A comparative study was made of the gross morphology, fine venation and cuticular features of Leitneria fioridana Chapman, the single living representative of the order Leitneriales and Leitneria eocenica (Berry) Brown, presumbaly a related fossil species. In addition to the type material, newly collected fossil specimens were investigated from clay pits in the Middle Eocene, Claiborne Formation, of western Tennessee and Kentucky. Foliate stipules attached to the petioles of several specimens suggest the assignment of this fossil leaf type to the genus Leitneria is incorrect. The nature of the gross morphology, fine venation and cuticular features confirms the misidentification. Previously, various specimens of this fossil leaf type have been placed in eight species of seven genera in seven families of six angiosperm orders, none of which are correct systematically. The gross morphology, venation and cuticular characters of the fossil leaf are distributed among a few extant South American genera of arborescent Rubiaceae. The fossil is an extinct rubiaceous leaf type which cannot be placed within a single modern subfamily, tribe or genus of the family. The organ genus, Paleorubiaceophyllum is proposed for these leaves. Three varieties of a single fossil species, P. eocenicum, are recognized. One variety with epidermal cells nearly twice the size of the others may represent a polyploid population.     

High yield bio-oil production from fast pyrolysis by metabolic controlling of Chlorella protothecoides

The use of renewable energy sources is becoming increasingly necessary to mitigate global warming. Recently much research has been focused on identifying suitable biomass species, which can provide high-energy outputs, to replace conventional fossil fuels. This paper reports an approach for increasing the yield of bio-oil production from fast pyrolysis after manipulating the metabolic pathway in microalgae through heterotrophic growth. The yield of bio-oil (57.9%) produced from heterotrophic Chlorella protothecoides cells was 3.4 times higher than from autotrophic cells by fast pyrolysis. The bio-oil was characterized by a much lower oxygen content, with a higher heating value (41 MJ kg(-1)), a lower density (0.92 kg l(-1)), and lower viscosity (0.02 Pas) compared to those of bio-oil from autotrophic cells and wood. These properties are comparable to fossil oil. The research could contribute to the creation of a system to produce energy from microalgae, and also could have great commercial potential for liquid fuel production.     

Oldest fossil basidiomycete clamp connections

A rachis of the fossil filicalean fern Botryopteris antiqua containing abundant septate hyphae with clamp connections is preserved in a late Visean (Mississippian; ~330 Ma) chert from Esnost (Autun Basin) in central France. Largely unbranched tubular hyphae pass from cell to cell, but may sometimes produce a branch from a clamp connection. Other clamp-bearing hyphae occur clustered in individual cells or small groups of adjacent host cells. These hyphae may be tubular, catenulate with numerous hyphal swellings, or they may display a combination of both. The Visean hyphae with clamp connections predate Palaeancistrus martinii, the heretofore oldest direct fossil evidence of Basidiomycota, by some 25 Ma.