Rapid genetic divergence in response to 15 years of simulated climate change

Genetic diversity may play an important role in allowing individual species to resist climate change, by permitting evolutionary responses. Our understanding of the potential for such responses to climate change remains limited, and very few experimental tests have been carried out within intact ecosystems. Here, we use amplified fragment length polymorphism (AFLP) data to assess genetic divergence and test for signatures of evolutionary change driven by long‐term simulated climate change applied to natural grassland at Buxton Climate Change Impacts Laboratory (BCCIL). Experimental climate treatments were applied to grassland plots for 15 years using a replicated and spatially blocked design and included warming, drought and precipitation treatments. We detected significant genetic differentiation between climate change treatments and control plots in two coexisting perennial plant study species (Festuca ovina and Plantago lanceolata). Outlier analyses revealed a consistent signature of selection associated with experimental climate treatments at individual AFLP loci in P. lanceolata, but not in F. ovina. Average background differentiation at putatively neutral AFLP loci was close to zero, and genomewide genetic structure was associated neither with species abundance changes (demography) nor with plant community‐level responses to long‐term climate treatments. Our results demonstrate genetic divergence in response to a suite of climatic environments in reproductively mature populations of two perennial plant species and are consistent with an evolutionary response to climatic selection in P. lanceolata. These genetic changes have occurred in parallel with impacts on plant community structure and may have contributed to the persistence of individual species through 15 years of simulated climate change at BCCIL.     

Forest tree species adaptation to climate across biomes: Building on the legacy of ecological genetics to anticipate responses to climate change

Intraspecific variation plays a critical role in extant and future forest responses to climate change. Forest tree species with wide climatic niches rely on the intraspecific variation resulting from genetic adaptation and phenotypic plasticity to accommodate spatial and temporal climate variability. A centuries-old legacy of forest ecological genetics and provenance trials has provided a strong foundation upon which to continue building on this knowledge, which is critical to maintain climate-adapted forests. Our overall objective is to understand forest trees intraspecific responses to climate across species and biomes, while our specific objectives are to describe ecological genetics models used to build our foundational knowledge, summarize modeling approaches that have expanded the traditional toolset, and extensively review the literature from 1994 to 2021 to highlight the main contributions of this legacy and the new analyzes of provenance trials. We reviewed 103 studies comprising at least three common gardens, which covered 58 forest tree species, 28 of them with range-wide studies. Although studies using provenance trial data cover mostly commercially important forest tree species from temperate and boreal biomes, this synthesis provides a global overview of forest tree species adaptation to climate. We found that evidence for genetic adaptation to local climate is commonly present in the species studied (79%), being more common in conifers (87.5%) than in broadleaf species (67%). In 57% of the species, clines in fitness-related traits were associated with temperature variables, in 14% of the species with precipitation, and in 25% of the species with both. Evidence of adaptation lags was found in 50% of the species with range-wide studies. We conclude that ecological genetics models and analysis of provenance trial data provide excellent insights on intraspecific genetic variation, whereas the role and limits of phenotypic plasticity, which will likely determine the fate of extant forests, is vastly understudied.     

Evidence for evolutionary change associated with the recent range expansion of the British butterfly, Aricia agestis, in response to climate change

Poleward range expansions are widespread responses to recent climate change and are crucial for the future persistence of many species. However, evolutionary change in traits such as colonization history and habitat preference may also be necessary to track environmental change across a fragmented landscape. Understanding the likelihood and speed of such adaptive change is important in determining the rate of species extinction with ongoing climate change. We conducted an amplified fragment length polymorphism (AFLP)‐based genome scan across the recently expanded UK range of the Brown Argus butterfly, Aricia agestis, and used outlier‐based (DFDIST and BayeScan) and association‐based (Isolation‐By‐Adaptation) statistical approaches to identify signatures of evolutionary change associated with range expansion and habitat use. We present evidence for (i) limited effects of range expansion on population genetic structure and (ii) strong signatures of selection at approximately 5% AFLP loci associated with both the poleward range expansion of A. agestis and differences in habitat use across long‐established and recently colonized sites. Patterns of allele frequency variation at these candidate loci suggest that adaptation to new habitats at the range margin has involved selection on genetic variation in habitat use found across the long‐established part of the range. Our results suggest that evolutionary change is likely to affect species’ responses to climate change and that genetic variation in ecological traits across species’ distributions should be maximized to facilitate range shifts across a fragmented landscape, particularly in species that show strong associations with particular habitats.     

Predicting adaptation of phenology in response to climate change, an insect herbivore example

Climate change has led to an advance in phenology in many species. Synchrony in phenology between different species within a food chain may be disrupted if an increase in temperature affects the phenology of the different species differently, as is the case in the winter moth egg hatch–oak bud burst system. Operophtera brumata (winter moth) egg hatch date has advanced more than Quercus robur (pedunculate oak) bud burst date over the past two decades. Disrupted synchrony will lead to selection, and a response in phenology to this selection may lead to species genetically adapting to their changing environment. However, a prerequisite for such genetic change is that there is sufficient genetic variation and severe enough fitness consequences. So far, examples of observed genetic change have been few. Using a half-sib design, we demonstrate here that O. brumata egg-hatching reaction norm is heritable, and that genetic variation exists. Fitness consequences of even a few days difference between egg hatch and tree bud opening are severe, as we experimentally determined. Estimates of genetic variation and of fitness were then combined with a climate scenario to predict the rate and the amount of change in the eggs' response to temperature. We predict a rapid response to selection, leading to a restoration of synchrony of egg hatch with Q. robur bud opening. This study shows that in this case there is a clear potential to adapt – rapidly – to environmental change. The current observed asynchrony is therefore not due to a lack of genetic variation and at present it is unclear what is constraining O. brumata to adapt. This kind of model may be particularly useful in gaining insight in the predicted amount and rate of change due to environmental changes, given a certain genetic variation and selection pressure.     

Rapid adaptation to climate change

In recent years, amid growing concerns that changing climate is affecting species distributions and ecosystems, predicting responses to rapid environmental change has become a major goal. In this issue, Franks and colleagues take a first step towards this objective (Franks et al. 2016). They examine genomewide signatures of selection in populations of Brassica rapa after a severe multiyear drought. Together with other authors, Franks had previously shown that flowering time was reduced after this particular drought and that the reduction was genetically encoded. Now, the authors have sequenced previously stored samples to compare allele frequencies before and after the drought and identify the loci with the most extreme shifts in frequencies. The loci they identify largely differ between populations, suggesting that different genetic variants may be responsible for reduction in flowering time in the two populations.     

Breathing life into climate change adaptation

The exploration of evolutionary biology and biological adaptation can inform society's adaptation to climate change, particularly the mechanisms that bring about adaptability, such as phenotypic plasticity, epigenetics, and horizontal gene transfer. Learning from unplanned autonomous biological adaptation may be considered undesirable and incompatible with human endeavor. However, it is argued that there is no need for agency, and planned adaptation is not necessarily preferable over autonomous adaptation. What matters is the efficacy of adaptive mechanisms and their capacity to increase societal resilience to current and future impacts. In addition, there is great scope for industrial ecology (IE) to contribute approaches to climate change adaptation that generate system models and baseline data to inform decision making. The problem of “uncertainty” was chosen as an example of a challenge that is shared by biological systems, IE, and climate change adaptation to show how biological adaptation might contribute solutions. Finally, the Coastal Climate Adaptation Decision Support tool was used to demonstrate how IE and biological adaptation approaches may be mainstreamed in climate change adaptation planning and practice. In conclusion, there is close conceptual alignment between evolutionary biology and IE. The integration of biological adaptation thinking can enrich IE, add new perspectives to climate change adaptation science, and support IE's engagement with climate change adaptation. There should be no major obstacles regarding the collaboration of industrial ecologists with the climate change adaptation community, but mainstreaming of biological adaptation solutions depends greatly on successful knowledge transfer and the engagement of open‐minded and informed adaptation stakeholders.     

黑龙江省玉米气候生产力演变及其对气候变化的响应

在气候变化背景下,深入揭示玉米气候生产力的变化趋势及其空间差异、明晰玉米气候资源利用规律,可为黑龙江省农业生产宏观决策提供科学依据.基于黑龙江省72个气象站1981—2014年的气象资料和对应的产量资料,采用逐步订正、空间插值、线性趋势分析等方法,研究玉米的光合、光温、气候生产力的时空变化特征、主要影响因素和增产潜力,并对未来不同气候情景下玉米气候生产力进行评估.结果表明: 研究期间,黑龙江省玉米光合、光温和气候生产力平均值分别为26558、19953和18742 kg·hm^-2;在空间分布上均表现为平原高山地低、由西南向东北逐渐减少;光合、光温、气候生产力均表现为显著增加趋势,其增幅分别为378、723和560 kg·hm^-2·(10 a)^-1,且辐射量和气温的增加对黑龙江省玉米生产具有正效应;玉米气候生产力对气候变化响应明显,松嫩平原西部因光能资源的减少导致玉米光合生产力降低,气温升高则在一定程度上弥补了光照带来的负面效应,玉米光温生产力下降趋势有所减缓,北部和东部对气候变暖的响应表现尤为明显,玉米光温生产力表现为明显上升趋势,而松嫩平原西南部及三江平原易旱区则对降水变化反映敏感;玉米实际单产与其气候生产力比率的平均值仅为24.1%,仍有75.9%的潜力有待开发;未来“暖湿型”气候对提高玉米气候生产力有利,而“冷干型”气候则不利于玉米气候生产力的提高.     

Ecotypic variation in the context of global climate change: revisiting the rules

Patterns of ecotypic variation constitute some of the few 'rules' known to modern biology. Here, we examine several well-known ecogeographical rules, especially those pertaining to body size in contemporary, historical and fossil taxa. We review the evidence showing that rules of geographical variation in response to variation in the local environment can also apply to morphological changes through time in response to climate change. These rules hold at various time scales, ranging from contemporary to geological time scales. Patterns of body size variation in response to climate change at the individual species level may also be detected at the community level. The patterns underlying ecotypic variation are complex and highly context-dependent, reducing the 'predictive-power' of ecogeographical rules. This is especially true when considering the increasing impact of human activities on the environment. Nonetheless, ecogeographical rules may help interpret the likely influences of anthropogenic climate change on ecosystems. Global climate change has already influenced the body size of several contemporary species, and will likely have an even greater impact on animal communities in the future. For this reason, we highlight and emphasise the importance of museum specimens and the continued need for documenting the earth's biological diversity.     

Phenotypic distribution models corroborate species distribution models: A shift in the role and prevalence of a dominant prairie grass in response to climate change

Phenotypic distribution within species can vary widely across environmental gradients but forecasts of species’ responses to environmental change often assume species respond homogenously across their ranges. We compared predictions from species and phenotype distribution models under future climate scenarios for Andropogon gerardii, a widely distributed, dominant grass found throughout the central United States. Phenotype data on aboveground biomass, height, leaf width, and chlorophyll content were obtained from 33 populations spanning a ~1000 km gradient that encompassed the majority of the species’ environmental range. Species and phenotype distribution models were trained using current climate conditions and projected to future climate scenarios. We used permutation procedures to infer the most important variable for each model. The species‐level response to climate was most sensitive to maximum temperature of the hottest month, but phenotypic variables were most sensitive to mean annual precipitation. The phenotype distribution models predict that A. gerardii could be largely functionally eliminated from where this species currently dominates, with biomass and height declining by up to ~60% and leaf width by ~20%. By the 2070s, the core area of highest suitability for A. gerardii is projected to shift up to ~700 km northeastward. Further, short‐statured phenotypes found in the present‐day short grass prairies on the western periphery of the species’ range will become favored in the current core ~800 km eastward of their current location. Combined, species and phenotype models predict this currently dominant prairie grass will decline in prevalence and stature. Thus, sourcing plant material for grassland restoration and forage should consider changes in the phenotype that will be favored under future climate conditions. Phenotype distribution models account for the role of intraspecific variation in determining responses to anticipated climate change and thereby complement predictions from species distributions models in guiding climate adaptation strategies.     

Characterizing the multivariate physiogenomic response to environmental change

Global change is altering the climate that species have historically adapted to – in some cases at a pace not recently experienced in their evolutionary history – with cascading effects on all taxa. A central aim in global change biology is to understand how specific populations may be “primed” for global change, either through acclimation or adaptive standing genetic variation. It is therefore an important goal to link physiological measurements to the degree of stress a population experiences (Annual Review of Marine Science, 2012, 4, 39). Although “omic” approaches such as gene expression are often used as a proxy for the amount of stress experienced, we still have a poor understanding of how gene expression affects ecologically and physiologically relevant traits in non‐model organisms. In a From the Cover paper in this issue of Molecular Ecology, Griffiths, Pan and Kelley (Molecular Ecology, 2019, 28) link gene expression to physiological traits in a temperate marine coral. They discover population‐specific responses to ocean acidification for two populations that originated from locations with different histories of exposure to acidification. By integrating physiological and gene expression data, they were able to elucidate the mechanisms that explain these population‐specific responses. Their results give insight into the physiogenomic feedbacks that may prime organisms or make them unfit for ocean global change.     

Individual variation in growth and physiology of symbionts in response to temperature

In many cases, understanding species’ responses to climate change requires understanding variation among individuals in response to such change. For species with strong symbiotic relationships, such as many coral reef species, genetic variation in symbiont responses to temperature may affect the response to increased ocean temperatures. To assess variation among symbiont genotypes, we examined the population dynamics and physiological responses of genotypes of Breviolum antillogorgium in response to increased temperature. We found broad temperature tolerance across genotypes, with all genotypes showing positive growth at 26, 30, and 32°C. Genotypes differed in the magnitude of the response of growth rate and carrying capacity to increasing temperature, suggesting that natural selection could favor different genotypes at different temperatures. However, the historical temperature at which genotypes were reared (26 or 30°C) was not a good predictor of contemporary temperature response. We found increased photosynthetic rates and decreased respiration rates with increasing contemporary temperature, and differences in physiology among genotypes, but found no significant differences in the response of these traits to temperature among genotypes. In species with such broad thermal tolerance, selection experiments on symbionts outside of the host may not yield results sufficient for evolutionary rescue from climate change.     

Synthesizing the role of epigenetics in the response and adaptation of species to climate change in freshwater ecosystems

Freshwater ecosystems are amongst the most threatened ecosystems on Earth. Currently, climate change is one of the most important drivers of freshwater transformation and its effects include changes in the composition, biodiversity and functioning of freshwater ecosystems. Understanding the capacity of freshwater species to tolerate the environmental fluctuations induced by climate change is critical to the development of effective conservation strategies. In the last few years, epigenetic mechanisms were increasingly put forward in this context because of their pivotal role in gene–environment interactions. In addition, the evolutionary role of epigenetically inherited phenotypes is a relatively recent but promising field. Here, we examine and synthesize the impacts of climate change on freshwater ecosystems, exploring the potential role of epigenetic mechanisms in both short‐ and long‐term adaptation of species. Following this wrapping‐up of current evidence, we particularly focused on bringing together the most promising future research avenues towards a better understanding of the effects of climate change on freshwater biodiversity, specifically highlighting potential molecular targets and the most suitable freshwater species for future epigenetic studies in this context.     

生物多样性保护适应气候变化的管理策略

应对气候变化和保护生物多样性是2大全球性热点环境问题。气候变化导致物种多样性丧失、生态系统服务降低和区域生态安全屏障功能受损,威胁到中国国土生态安全格局和生态脆弱区域的可持续发展,给生物多样性保护带来新的挑战。做好生物多样性保护适应气候变化的风险管理工作,既是生物多样性应对气候变化风险的必要措施,也是减缓气候变化的重要途径。结合爱知目标10的实现情况,分析了欧盟、澳大利亚、美国等发达国家发布的生物多样性适应气候变化技术政策制定情况、中国生物多样性应对气候变化进展情况,剖析了中国生物多样性保护适应气候变化存在的问题,包括生物多样性应对气候变化的科学认知亟待提高、生物多样性保护适应气候变化的能力建设不足、自然保护地之间缺乏适应气候变化的生态廊道网络、生物多样性保护适应气候变化的技术标准缺乏。研究提出了中国生物多样性应对气候变化的适应性管理策略,包括制定《中国生物多样性保护协同应对气候变化的国家方案》、加强生物多样性保护适应气候变化的能力建设、开展自然保护区适应气候变化的风险管理试点、强化生物多样性应对气候变化的科技支撑,以期为推进纳入气候变化风险管理的生物多样性保护工作提供决策依据。     

Penguin responses to climate change in the Southern Ocean

Penguins are adapted to live in extreme environments, but they can be highly sensitive to climate change, which disrupts penguin life history strategies when it alters the weather, oceanography and critical habitats. For example, in the southwest Atlantic, the distributional range of the ice‐obligate emperor and Adélie penguins has shifted poleward and contracted, while the ice‐intolerant gentoo and chinstrap penguins have expanded their range southward. In the Southern Ocean, the El Niño‐Southern Oscillation and the Southern Annular Mode are the main modes of climate variability that drive changes in the marine ecosystem, ultimately affecting penguins. The interaction between these modes is complex and changes over time, so that penguin responses to climate change are expected to vary accordingly, complicating our understanding of their future population processes. Penguins have long life spans, which slow microevolution, and which is unlikely to increase their tolerance to rapid warming. Therefore, in order that penguins may continue to exploit their transformed ecological niche and maintain their current distributional ranges, they must possess adequate phenotypic plasticity. However, past species‐specific adaptations also constrain potential changes in phenology, and are unlikely to be adaptive for altered climatic conditions. Thus, the paleoecological record suggests that penguins are more likely to respond by dispersal rather than adaptation. Ecosystem changes are potentially most important at the borders of current geographic distributions, where penguins operate at the limits of their tolerance; species with low adaptability, particularly the ice‐obligates, may therefore be more affected by their need to disperse in response to climate and may struggle to colonize new habitats. While future sea‐ice contraction around Antarctica is likely to continue affecting the ice‐obligate penguins, understanding the responses of the ice‐intolerant penguins also depends on changes in climate mode periodicities and interactions, which to date remain difficult to reproduce in general circulation models.     

Genome-wide evolutionary response to a heat wave in Drosophila

Extreme climatic events can substantially affect organismal performance and Darwinian fitness. In April 2011, a strong heat wave struck extensive geographical areas of the world, including Western Europe. At that time, we happened to resume and extend a long-term time series of seasonal genetic data in the widespread fly Drosophila subobscura, which provided a unique opportunity to quantify the intensity of the genetic perturbation caused by the heat wave. We show that the spring 2011 genetic constitution of the populations transiently shifted to summer-like frequencies, and that the magnitude of the genetic anomaly quantitatively matched the temperature anomaly. The results provide compelling evidence that direct effects of rising temperature are driving adaptive evolutionary shifts, and also suggest a strong genetic resilience in this species.     

Loss of adaptive variation during evolutionary responses to climate change

The changes in species' geographical distribution demanded by climate change are often critically limited by the availability of key interacting species. In such cases, species' persistence will depend on the rapid evolution of biotic interactions. Understanding evolutionary limits to such adaptation is therefore crucial for predicting biological responses to environmental change. The recent poleward range expansion of the UK brown argus butterfly has been associated with a shift in female preference from its main host plant, rockrose (Cistaceae), onto Geraniaceae host plants throughout its new distribution. Using reciprocal transplants onto natural host plants across the UK range, we demonstrate reduced fitness of females from recently colonised Geraniaceae‐dominated habitat when moved to ancestral rockrose habitats. By contrast, individuals from ancestral rockrose habitats show no reduction in fitness on Geraniaceae. Climate‐driven range expansion in this species is therefore associated with the rapid evolution of biotic interactions and a significant loss of adaptive variation.     

气候变化背景下野生动物脆弱性评估方法研究进展

脆弱性评估是研究气候变化影响野生动物的重要内容,识别野生动物脆弱性,是适应和减缓气候变化影响的关键和基础。开展气候变化背景下野生动物的脆弱性评估工作,目的是为了确定易受气候变化影响的物种和明确导致物种脆弱性的因素,其评估结果有助于人类认识气候变化对野生动物的影响,为野生动物适应气候变化保护对策的制定提供科学依据。对野生动物而言(物种),脆弱性是物种受气候变化影响的程度,包括暴露度、敏感性和适应能力三大要素。其中,暴露度是由气候变化引起的外在因素,如温度、降雨量、极值天气等;敏感性是受物种自身因素影响,如种间关系、耐受性等;适应能力是物种通过自身调整来减小气候变化带来的影响,如迁移或扩散到适宜生境的能力、塑性反应和进化反应等。对近期有关气候变化背景下野生动物脆弱性评估方法予以综述,比较每种评估方法所选取指标的差异,总结在脆弱性评估中遇到的不确定性指标的处理方法,以及脆弱性评估结果在野生动物适应气候变化对策中的应用。通过总结野生动物脆弱性评估方法,以期为气候变化背景下评估我国野生动物资源的脆弱性提供参考方法。     

Monitoring biogeographical response to climate change: The potential role of aeropalynology

To test models predicting biological reponse to future climate change, it is essential to find climatically-sensitive, easily monitored biological indicators that respond to climate change. Routine monitoring of airborne pollen, now undertaken on a near-global basis, could be adapted for this purpose. Analysis of spatial and seasonal variations in pollen levels in New Zealand suggests that the timing of onset and peak abundance of certain pollen taxa should be explored as possible bio-indicators of climate change. The onset of the airborne grass pollen season during the summer of 1988/89 varied consistently with latitude, and hence temperature, with the season in Southland commencing 8--9 days after Northland. However, these patterns were only apparent after sampling sites were separated into two groups reflecting predominantly urban or rural pollen sources. A less consistent north to south trend was apparent in the frequency of high (30 grains/m³) grass pollen levels, with high levels frequent in North Island localities in November, December and January and in southern localities during December and January. The successive onset of pollen seasons for the principal tree species during the spring-to-early summer warming interval may also be a useful bio-indicator of climate change. As well as assisting forecasts of the onset of the pollinosis season, these biogeographical patterns, reflecting climatic variation with latitude, suggest that routine aeropalynological monitoring might provide early signals of vegetation response to climate change. These conclusions are supported by recent investigations of long-term aeropalynological datasets in Europe that indicate earlier onset of pollen seasons in response to recent global warming.     

乌伊岭国家级自然保护区植被覆盖演变及其对气候突变的响应

探究中国北方高纬度森林覆盖区植被演变受到气候因子变化乃至突变的影响,选用MODIS-NDVI数据与TM/ETM+数据,结合62年的气象观测数据,运用像元二分法模型、累计距平分析、Mann-Kendall非参数检验、滑动T检验与相关性分析,探讨了乌伊岭国家级自然保护区1975—2016年气候变化及其突变对植被覆盖的演化规律,并对不同气候因子与植被覆盖类型的空间变化进行相关性分析。结果表明:(1)乌伊岭保护区气候变化呈现暖干化发展的趋势。年均气温上升(0.557℃/10a),年均最低气温与冬季增温幅度最快,秋季最慢。降水量年际变化较小(-14.052 mm/10a),季节性变化明显。经突变性检验,1980—1995年是气候增温减湿的突变时期。(2)研究区植被生长季的NDVI为0.673,有植被覆盖的区域占87.69%,其中高等植被覆盖区所占比最大。(3)气候突变时期,生长季NDVI显著下降,植被退化严重。低植被覆盖区无显著变化,而高植被覆盖区开始逐渐退化为中等与中低等植被覆盖区。在空间上植被覆盖的退化状况主要由中心山地沿四周低山丘陵区累年逐渐降低。不同植被覆盖区域下降的幅度:混交林草地针叶林耕地湿地。(4)乌伊岭保护区年均最大NDVI与年均气温和年均降水量的相关系数分别为0.261、0.068,其中呈正相关区域占总面积56.67%和42.79%,在分布趋势上两者都表现出明显的空间差异性。而气温因子影响植被覆盖的空间范围与能力更强,空间相关性更高,也是影响植被退化的主导因素。