Distribution and abundance of fish in deep-sea coral habitats

Experimental fishing with long-lines and gillnets was conducted on the continental shelf off southwestern Norway between 150 and 350 m depth. Abundance and distribution of redfish (Sebastes marinus L., 1758), ling (Molva molva L., 1758), and tusk (Brosme brosme Ascanius, 1772) were quantified in Lophelia pertusa (L., 1758) coral reefs and in non-coral habitats. The largest catches of redfish were made with long-line fleets set in coral reef habitats. Ling and tusk were also most numerous in coral habitats, although not statistically significant. Fish caught in coral habitats tended to be larger in size than in non-coral habitats. The diet of redfish, tusk and ling included the same prey groups in all habitats, but they differed at the species level. Lophelia-reefs may provide a profitable feeding place for tusk. For the planktivorous Sebastes, on the other hand, their affinity to the reefs seems primarily to be related to the physical structure offered by the reefs.     

Distribution and abundance of soft-sediment meiofauna and a predatory goby in a coral reef lagoon

Spatial patterns in the abundance of the softsediment meiofauna and a predatory goby, Valenciennia longipinnis, were examined in the lagoon of One Tree Reef (Great Barrier Reef). The study provided a quantitative framework to assess the importance of physical factors on and predator prey interactions between the meiofauna and V.longipinnis. Patterns of abundance were examined at two spatial scales: among four habitats (100's of m apart) and among sites (10's of m apart) within habitats. Of the four major constituents of the meiofauna (harpacticoid copepods, nematodes, polychaetes and oligochaetes), gut analyses showed that harpacticoid copepods were the primary prey of V.longipinnis. Spatial patterns of meiofaunal abundance in the lagoon were taxon specific. Polychaetes and harpacticoid copepods exhibited significant differences among habitats. Within habitats, however, polychaetes exhibited significant differences between sites whereas copepods were uniformly distributed. Abundances of nematodes and oligochaetes did not differ between habitats. Densities of nematodes differed significantly between sites while the number of oligochaetes were similar at both spatial scales. V.longipinnis was more abundant in shallow habitats than in deep ones. This study suggests that sediment type may be an important factor influencing the distribution of both the goby and the meiofauna. V.longipinnis and two of the four meiofaunal taxa (harpacticoid copepods and polychaetes) were more abundant in the shallow habitat with fine-grained sediments. There was no significant difference between abundances of meiofaunal taxa in sites where V.longipinnis was present or absent. Overall, more fish occurred in the habitat which had the highest densities of harpacticoid copepods.     

Predators alter community organization of coral reef cryptofauna and reduce abundance of coral mutualists

Coral reefs are the most diverse marine systems in the world, yet our understanding of the processes that maintain such extraordinary diversity remains limited and taxonomically biased toward the most conspicuous species. Cryptofauna that live deeply embedded within the interstitial spaces of coral reefs make up the majority of reef diversity, and many of these species provide important protective services to their coral hosts. However, we know very little about the processes governing the diversity and composition of these less conspicuous but functionally important species. Here, we experimentally quantify the role of predation in driving the community organization of small fishes and decapods that live embedded within Pocillopora eydouxi, a structurally complex, reef-building coral found widely across the Indo-Pacific. We use surveys to describe the natural distribution of predators, and then, factorially manipulate two focal predator species to quantify the independent and combined effects of predator density and identity on P. eydouxi-dwelling cryptofauna. Predators reduced abundance (34 %), species richness (20 %), and modified species composition. Rarefaction revealed that observed reductions in species richness were primarily driven by changes in abundance. Additionally, the two predator species uniquely affected the beta diversity and composition of the prey assemblage. Predators reduced the abundance and modified the composition of a number of mutualist fishes and decapods, whose benefit to the coral is known to be both diversity- and density-dependent. We predict that the density and identity of predators present within P. eydouxi may substantially alter coral performance in the face of an increased frequency and intensity of natural and anthropogenic stressors.     

Multiple modes in a coral species abundance distribution

Species abundance distributions are an important measure of biodiversity and community structure. These distributions are affected by sampling, and alternative species-abundance models often make similar predictions for small sample sizes. Very large samples reveal the relative abundances of rare species, and thus provide information about species relative abundances that small samples cannot. Here, we present the species-abundance distribution for a sample of > 40,000 coral colonies at a single site, exceeding existing samples of coral local assemblages by over an order of magnitude. This abundance distribution is multimodal when examined on a logarithmic scale. Four different model selection procedures all indicate that the underlying community abundance distribution has at least three modes. We show that the multiple modes are not caused by mixtures of species with different habitat preferences. However, spatial aggregation partially explains our results. We inspect published work on species abundance distributions, and suggest that multimodality may be a common feature of large samples.     

Physical control of plankton population abundance and dynamics in intertidal rock pools

Little is known about the population structure and dynamics of plankton of intertidal rock pools. A numerical model was developed for rock pool plankton with growth limited by both tidal washout and the stress associated with adverse conditions in high-shore pools. This model predicts that a stress tolerant species will tend to have maximum population densities in high-shore pools and that populations will fluctuate in opposite phase to the spring-neap tidal cycle. Conversely, where a species is susceptible to stress in high-shore pools, the maximum population density is likely to occur lower on the shore, and numbers in upper shore pools will cycle in phase with the spring-neap cycle. These two alternative predictions were sufficient to classify the dynamics of the most abundant species in time series taken from rock pools in the Isle of Man. The dinoflagellate Oxyrrhis marina followed the predictions of the stress tolerant model. In comparison, the spatiotemporal patterns of other taxa, including a ciliate, a dinoflagellate and cryptophytes, suggested stress-susceptible life histories.     

Parrotfish abundance and selective corallivory on a Belizean coral reef

Parrotfish are important members of coral reef communities because they consume macroalgae that would otherwise outcompete reef-building corals for space. However, some Caribbean parrotfish species also feed directly on live corals, and thus have the potential to negatively impact coral fitness and survival. This study investigates selective grazing by parrotfish on particular coral species, differences in grazing incidence among reef habitats and intraspecific discrimination among colonies of several coral species. We also investigate spatial and temporal patterns of parrotfish species abundance across habitats on the Belize barrier reef, and examine correlations between parrotfish abundance and grazing intensity across reef habitats. We found that members of the Montastraea annularis species complex, major builders of Caribbean reefs, were preferred targets of parrotfish grazing across all reef habitats, while M. cavernosa, Agaricia agaricites, Diploria strigosa, Porites astreoides and Porites porites were not preferred; Siderastrea siderea was preferentially grazed only in the spur and groove habitats. Parrotfish grazing preferences varied across habitats; M. annularis was grazed most often in shallow habitats, whereas M. franksi was consumed more at depth. Although it was not possible to directly observe parrotfish grazing on corals, we did find a positive correlation between Sparisoma aurofrenatum abundance and M. franksi grazing incidence across habitats. Finally, when we compared our results to parrotfish abundances measured by a previous study, we found that Sparisoma viride and Sp. aurofrenatum, two species known to be corallivorous, had increased abundances between 1982 and 2004. In light of escalating threats on Caribbean reef corals, it would be important for future studies to evaluate the impact of parrotfish corallivory on coral survival.     

Herbivore abundance and grazing intensity on a Caribbean coral reef

Herbivory is a primary factor in determining the structure of coral reef communities. Spatial variation among reef habitats in the intensity of herbivory has been documented, but underlying variation in species composition and abundance within the herbivore guild has received little attention. The distribution and relative abundances of herbivorous fishes and sea urchins across several habitats were studied on the Belizean barrier reef off the Caribbean coast of Central America. Marked variation in total herbivore density as well as major changes in the composition of the herbivore guild were found across reef habitats. Acanthurids (surgeonfishes) predominated in shallow areas (< 5 m) while scarids (parrotfishes) were dominant in deeper habitats. Significant differences among habitats in an experimental assay of grazing intensity were strongly correlated with herbivore abundance. The spatial distribution of herbivorous fishes across reef habitats does not appear to be simply explained by differences in reef topography, but may depend on complex interactions among proximity to nearby shelter, predator abundance, density of territorial competitors, and local availability of food resources.     

A test model for optical plankton counter (OPC) coincidence and a comparison of OPC-derived and conventional measures of plankton abundance

The use of the optical plankton counter (OPC) for processingzooplankton net samples is explored. A comparison of OPC countsand microscope counts from net samples was reasonable. Similarly,OPC biovolume and carbon had a ratio of 23:1 (biovolume:carbon).Coincidence was modelled using the Poisson distribution, andtested with a large diatom Coscinodiscus wailesii. Agreementappeared to be good up to 60 s^–1; above this, the maximumresponse rate of the system became limiting.     

Computer simulation of error rates of Poisson-based interval estimates of plankton abundance

The routine assignment of error rates (confidence intervals) to Poisson distribution estimates of plankton abundance should be rejected. In addition to the interval estimation procedure being pseudoreplicative, it is not robust to common violations of its assumptions. Because the spatial dispersion of organisms in sampling units from the counting chamber to the field is rarely random and because counting protocols are usually terminated by a count threshold having been equalled or exceeded, Poisson based estimates are usually derived from sampling non-Poisson distributions. Computer simulation was used to investigate the quantitative consequences of such estimates. The expected mean error rate of 95% confidence intervals is inflated from 5% to 15% as contagion increases, as the parametric variance-mean ratio increases from 1 to 2. Also, count threshold termination of the counting protocol effects both a biased estimate of the parametric mean (or total) and alters expected mean error rates, especially if the total count is low (< 100 organisms) and the mean density in the sampling unit is low.     

Continuous plankton records: seasonal variations in the distribution and abundance of plankton in the North Atlantic Ocean and the North Sea

Charts are presented of the seasonal variations in the distributionof four phytoplankton and five zooplankton taxa in the NorthAtlantic and the North Sea. The main factors determining theseasonal variations appear to be the distribution of the mainoverwintering stocks, the current system and, in some instances,temperature control of the rate of population increase. Informationis presented about the variation with latitude (over the rangefrom 34° N to 65 ° N) of the seasonal regime of theplankton. On the assumption that there is a relationship betweennutrient supply and vertical temperature stratification themain features of this variability can be interpreted. In thesouth (to about 43° N) nutrient limitation plus grazingappear to be dominant, resulting in a bimodal seasonal cycleof phytoplankton. North of about 60° N the system appearsto be limited by the size of the phytoplankton stocks beinggrazed primarily by Calanus Finmarchicus and Euphausiacea. Inan extensive zone, from about 44° N to 60° N, it wouldappear that the spring bloom of phytoplankton is under-exploitedby grazing while in summer the zooplankton graze the daily productionof the phytoplankton, the stocks of which are probably maintainedby in situ nutrient regeneration. The implications, for at leastthis mid-latitude zone, that rates and fluxes of processes,as opposed to density dependent interactions between stocks,play a major role in the dynamics of the seasonal cycle is consistentwith previously reported observations suggesting that physicalenvironmental factors play a major role in determining year-to-yearfluctuations in the abundance of the plankton.     

The plankton community of Lake Matano: factors regulating plankton composition and relative abundance in an ancient,tropical lake of Indonesia

Recent evidence reveals that food webs within the Malili Lakes, Sulawesi, Indonesia, support community assemblages that are made up primarily of endemic species. It has been suggested that many of the species radiations, as well as the paucity of cosmopolitan species in the lakes, are related to resource limitation. In order to substantiate the possibility that resource limitation is playing such an important role, a study of the phytoplankton and zooplankton communities of Lake Matano was implemented between 2000 and 2004. We determined species diversity, relative abundances, size ranges, and total biomass for the phytoplankton and zooplankton, including the distribution of ovigerous individuals throughout the epilimnion of Lake Matano in three field seasons. The phytoplankton community exhibited very low biomass (<15 μg l^?1) and species richness was depressed. The zooplankton assemblage was also limited in biomass (2.5 mg l^?1) and consisted only of three taxa including the endemic calanoid Eodiaptomus wolterecki var. matanensis, the endemic cyclopoid, Tropocyclops matanensis and the rotifer Horaella brehmi. Zooplankton were very small (<600 μm body length), and spatial habitat partitioning was observed, with Tropocylops being confined to below 80 m, while rotifer and calanoid species were consistently observed above 80 m. Less than 0.1% of the calanoid copepods in each year were egg-bearing, suggesting very low population turnover rates. It was concluded that chemical factors as opposed to physical or biological processes were regulating the observed very low standing crops of phytoplankton which in turn supports a very minimal zooplankton community restricted in both species composition and abundance. As chemical factors are a function of the catchment basin of Lake Matano, it is predicted that resource limitation has long played an important role in shaping the unique endemic assemblages currently observed in the food web of the lake.     

Long-term persistence of low coral cover and abundance on a disturbed coral reef flat in the northern Red Sea

Levels of coral cover and abundance on a coral reef flat in Eilat (Israeli Red Sea) were estimated in 2001 by surveying nineteen 10-m transects, and compared to the levels reported in the same area between 1966 and 1973. Lower values compared to 1966 levels are evident, and there has been only a modest recovery following a catastrophic low tide that killed a large proportion of the corals in 1970. Percent cover of soft and stony corals (16.1%) was less than half of that reported for 1969 (35%), when a sharp decrease in coral abundance had already been observed. The total number of soft and stony coral colonies observed was 300, compared to 541 in 1966. In contrast to 1966, when half of the transects surveyed contained more than 30 coral colonies, no transects with this number of corals were observed. The cover of seven of the most common stony coral species was 841 cm, which is twice the coral cover of that in 1973, but only 22% of the 1969 level. Millepora dichotoma, an abundant species before 1970, has almost disappeared, and the soft coral Litophyton, abundant in 1972, was not observed. Anthropogenic nutrient enrichment is apparently among the causes for the lack of coral recovery in the studied reef flat. Reefs located further away from sources of pollution have recovered quickly after natural and anthropogenic disturbances and have retained their coral abundance and diversity.     

Simulations of the effect of advective-diffusive processes on observations of plankton abundance and population rates

The transport of plankters by water currents is acknowledgedto have an important influence on observations of organism abundanceand population processes, but assessment of this effect hasbeen difficult to achieve. This paper presents simulations usingthe theory of A.Okubo and co-workers. The transport of multiplecurrent drogues over time in a physically realistic advectiveand diffusive current field was simulated. The impact of transportprocesses on the plankton abundance associated with each currentdrogue was then evaluated, and the results are presented graphically.Although plankton numbers were held constant in the simulation,the inferred, but incorrect, population rate parameters thatwould be obtained using successive observations of planktonabundance in the simulated flow field are also presented.     

Declines in the abundance of Chaetodon butterflyfishes following extensive coral depletion

This study documented temporal variation in the abundance of butterflyfishes (Chaetodontidae) at Trunk Reef, on the central Great Barrier Reef, Australia, from May 2000 to March 2005. During this period, live coral cover declined by >90%, mostly due to severe coral bleaching. There were no short-term changes (within 4 months) in the abundance of butterflyfishes following initial declines in live coral cover. Surveys conducted in 2005, however, revealed significant declines in the abundance of Chaetodon baronessa , Chaetodon lunulatus , Chaetodon trifascialis, Chaetodon plebeius and Chaetodon rainfordi , all of which are obligate hard-coral feeders. In contrast, there was no significant change in the abundance of Chaetodon auriga , Chaetodon aureofasciatus , Chaetodon citrinellus , Chaetodon melannotus or Chaetodon vagabundus , which are much less reliant on scleractinian coral for food. Clearly, extensive coral depletion, such as that caused by severe coral bleaching, can have a major effect on the abundance of butterflyfishes. Specific responses of butterflyfishes varied according to their reliance on hard corals for food and their ability to utilize alternate prey types.     

Crustacean plankton abundance in the Danube River and in its side arms in Hungary

The spatial distribution and seasonal dynamics of the crustacean zooplankton were studied in the Danube River and in its side arms near Budapest, Hungary. Microcrustaceans were sampled biweekly from October 2006 to November 2007 at eleven sites. Thermocyclops crassus, Moina micrura and Bosmina longirostris added up to 57.6% of the total density. Comparisons of the different water bodies stressed the separation of the eupotamal and parapotamal side arms. Densities in the side arms were one respectively two orders of magnitude higher as compared to the main channel, which was relatively poor in plankton. There were remarkable longitudinal and transversal variations in the abundance of the major zooplankton groups (cladocerans, adult copepods, copepodites, nauplii) and dominant species (t-test, P < 0.05). However, no general pattern was observed, the spatial distribution depended on the examined objects. There were statistically significant seasonal differences in zooplankton abundance (Tukey-test, P < 0.05). Water residence time and water discharge were not found to be related to zooplankton abundance, but water temperature was positively correlated with microcrustacean density.     

Comparisons of Calanus finmarchicus fifth copepodite abundance estimates from nets and an optical plankton counter

The response of an optical plankton counter (OPC) to concentrationsof Calanus finmarchicus fifth copepodites (C5) ranging from2 to 1621 copepods m^-3 was examined during the summers of 1999–2001over the continental shelf of the northwest Atlantic Ocean.Net tows from either a bongo net or a multiple opening/closingnet and environmental sensing system (MOCNESS) were collocatedwith vertical OPC casts to provide comparable data. OPC-derivedparticle abundance in the 1.5–2.0 mm equivalent circulardiameter range was strongly correlated with net-derived abundanceof C. finmarchicus C5 (r² = 0.655 and 0.726 for comparisonsin two independent datasets). Particle abundance in this sizerange increased with increases in the descent speed of the verticallyprofiled OPC, which indicated avoidance of the small samplingaperture by C. finmarchicus C5. A regression model was developedto relate OPC particle abundance in the 1.5–2.0 mm sizerange to the abundance of C. finmarchicus C5 and the descentspeed of the OPC. The data fitted the model well (r² = 0.684)and the inverted model was used as a calibration equation topredict C. finmarchicus C5 abundances from OPC measurementsin an independent comparison to net abundances. In that case,the calibration equation underestimated net abundance by anaverage factor of 2. However, anomalously low OPC particle abundancesfor some casts suggest that spatial heterogeneity (patchiness)can confound such comparisons.     

Changes in abundance, composition and controls within the plankton of a fertilised arctic lake

1. An oligotrophic arctic lake was fertilised with inorganic nitrogen and phosphorus as (NH₄)₂ NO₃ and H₃PO₄ for five summers. The loading rate was 1.7–2.5 mmol N m^–2 day^–1 and 0.136–0.20 mmol P m^–2 day^–1 which is two to three times the annual loading of lakes in the area. The heterotrophic microzooplankton community was enumerated during the experiment as well as 1 year pre- and post-treatment.
2. The structure of the microplankton community changed from a nutrient limited system, dominated by oligotrich protozoans and small-particle feeding rotifers, to a system dominated by a succession of peritrich protozoans and predatory rotifers. These peritrich protozoans and predatory rotifers were not present prior to fertilisation and never constituted more than a small fraction of the biomass in other lakes at the research site. The average biomass of the rotifers and protozoans was more than seven and a half times larger by the end of fertilisation than it was initially.
3. Because of the increases in numbers of individuals in these new taxa, the structure of the microbial food web changed. When fertilisation stopped, most parameters returned to prefertilisation levels within 1 year.