Profiling the secretomes of plant pathogenic Proteobacteria

Secreted proteins are central to the success of plant pathogenic bacteria. They are used by plant pathogens to adhere to and degrade plant cell walls, to suppress plant defence responses, and to deliver bacterial DNA and proteins into the cytoplasm of plant cells. However, experimental investigations into the identity and role of secreted proteins in plant pathogenesis have been hindered by the fact that many of these proteins are only expressed or secreted in planta, that knockout mutations of individual proteins frequently have little or no obvious phenotype, and that some obligate and fastidious plant pathogens remain recalcitrant to genetic manipulation. The availability of genome sequence data for a large number of agriculturally and scientifically important plant pathogens enables us to predict and compare the complete secretomes of these bacteria. In this paper we outline strategies that are currently being used to identify secretion systems and secreted proteins in Proteobacterial plant pathogens and discuss the implications of these analyses for future investigations into the molecular mechanisms of plant pathogenesis.     

Plant-mediated effects in the Brassicaceae on the performance and behaviour of parasitoids

Direct and indirect plant defences are well studied, particularly in the Brassicaceae. Glucosinolates (GS) are secondary plant compounds characteristic in this plant family. They play an important role in defence against herbivores and pathogens. Insect herbivores that are specialists on brassicaceous plant species have evolved adaptations to excrete or detoxify GS. Other insect herbivores may even sequester GS and employ them as defence against their own antagonists, such as predators. Moreover, high levels of GS in the food plants of non-sequestering herbivores can negatively affect the growth and survival of their parasitoids. In addition to allelochemicals, plants produce volatile chemicals when damaged by herbivores. These herbivore induced plant volatiles (HIPV) have been demonstrated to play an important role in foraging behaviour of insect parasitoids. In addition, biosynthetic pathways involved in the production of HIPV are being unraveled using the model plant Arabidopsis thialiana. However, the majority of studies investigating the attractiveness of HIPV to parasitoids are based on experiments mainly using crop plant species in which defence traits may have changed through artificial selection. Field studies with both cultivated and wild crucifers, the latter in which defence traits are intact, are necessary to reveal the relative importance of direct and indirect plant defence strategies on parasitoid and plant fitness. Future research should also consider the potential conflict between direct and indirect plant defences when studying the evolution of plant defences against insect herbivory.     

Measuring the importance of competition: a new formulation of the problem

1.  Currently, there is a debate among plant ecologists on the concepts of the intensity of competition and the importance of competition, which is central to many issues of modern plant population ecology and plant community ecology.
2.  It is problematic that the current measures of intensity and importance of competition, typically, are reported as dimensionless indices because they hide the fact that both indices are functions of plant density and the level of the environmental gradient.
3.  Here, a new formulation of the concepts is suggested, which explicitly highlights the functional dependencies on plant density and the level of the environmental gradient. The new measures are a generalization of the previous indices and correspond to the previous indices in the case of a simple experimental design.
4.  The suggested measures of the intensity and importance of competition are exemplified using data from a response surface competition experiment between Agrostis capillaris and Festuca ovina along a herbicide gradient, where the expected clear effect of plant density was demonstrated.
5.   Synthesis . As the suggested measures of the intensity and importance of competition explicitly highlight the functional dependencies on plant density and the level of the environmental gradient, we think that they will help to ensure a closer connection between experimental plant ecology and the attempts to model plant populations and communities.     

On the analysis of competition at the level of the individual plant

Summary The extent to which some measure of local crowding can account for the performance of individual plants is examined with reference to populations of two species of annual plant. Only a relatively small proportion of the variation in individual plant yield could be accounted for by measures of local crowding. These included the number of close neighbours, an estimate of the area available to each plant and competitive pressure. A multiple regression that took account of both emergence time and local crowding increased the proportion of variance that could be accounted for up to 50%. Computer simulations of the growth of indivudual plants in monoculture were then caried out in order to determine whether the unexplained variation resulted from fundamental flaws in the models or from unaccounted for sources of variation in the field. The results from the simulations again indicated that only a relatively low proportion of the variation in individual plant yield could be accounted for by emergence time and local density, even though these were known to be the only variables present. These findings are discussed in relation to the relative importance of one-sided and two-sided competition, and the complex cross-correlations that occur between individuals in plant populations. These two factors will make it very difficult for field workers to determine accurately what factors determine individual plant yield and in particular to predict the effects of local crowding on the performance of individual plants.     

植物激素ABA调控植物根系生长的研究进展

脱落酸（abscisic acid,ABA）是一种重要的植物激素,在调控种子发育、种子休眠与萌发、抑制生长、促进落花落果、参与植物应对外界环境胁迫等过程中发挥着重要的生理功能。ABA还能与其他植物激素（如生长素、乙烯等）互作进而精细调控植物根系的生长。本文以模式植物拟南芥（Arabidopsis thaliana（L.）Heynh）为主要对象,对近年来国内外在ABA调控植物根系生长方面的研究成果、ABA与其他植物激素（如GA等）互作调控根系生长及调控非生物逆境下根系发育的机理等进行综述,并对其未来的研究方向进行了展望。     

植物凝集素的分子生物学研究

植物凝集素是一类具有高度特异性糖结合活性的蛋白,含有一个或多个可与单糖或寡聚糖特异可逆结合的非催化结构域。它的糖结合特异性主要针对外源寡糖,主要生理功能是介异植物的防御反应。到目前为止已克隆了２２２个植物凝集素基因。作者就植物凝集素的分类、性质、功能、凝集素基因的克隆和凝集素的翻译后加工过程作一综述。     

植物离体培养中器官发生调控机制的研究进展

本文就离体培养的植物组织对生长调节物质的吸收和代谢,外源生长调节物质对内源激素水平的影响,内源激素对细胞脱分化和再分化的调控,生长素和细胞分裂素基因与器官发生的关系,与器官发生有关的基因和特异蛋白等问题的研究进展进行了评述,并对下一步研究提出了自己的看法。     

植物一氧化氮(NO)研究进展

一氧化氮（NO）是植物的重要生物活性分子,它参与植物生长发育的许多过程,如种子萌发、下胚轴伸长、叶扩展、根生长、侧根形成、细胞凋亡以及植物抗逆反应等。大量的证据表明,植物可以通过与动物NO合酶类似的酶产生NO。此外,植物还可通过硝酸还原酶产生NO。NO在植物中的信号传递途径仍不十分清楚,植物有可能采用与动物相类似的机制。由于植物的大多数生长发育现象都受到植物激素的调节和控制,NO与植物激素之间的关系也受到越来越多的关注。通过激素起作用可能是植物内源NO作用的机理之一。     

Structure and ecological function of the soil microbiome affecting plant–soil feedbacks in the presence of a soil-borne pathogen

Interactions between plants and soil microbes are important for plant growth and resistance. Through plant–soil-feedbacks, growth of a plant is influenced by the previous plant that was growing in the same soil. We performed a plant–soil feedback study with 37 grass, forb and legume species, to condition the soil and then tested the effects of plant-induced changes in soil microbiomes on the growth of the commercially important cut-flower Chrysanthemum in presence and absence of a pathogen. We analysed the fungal and bacterial communities in these soils using next-generation sequencing and examined their relationship with plant growth in inoculated soils with or without the root pathogen, Pythium ultimum. We show that a large part of the soil microbiome is plant species-specific while a smaller part is conserved at the plant family level. We further identified clusters of plant species creating plant growth promoting microbiomes that suppress concomitantly plant pathogens. Especially soil inocula with higher relative abundances of arbuscular mycorrhizal fungi caused positive effects on the Chrysanthemum growth when exposed to the pathogen. We conclude that plants differ greatly in how they influence the soil microbiome and that plant growth and protection against pathogens is associated with a complex soil microbial community.     

植物一氧化氮(NO)研究进展

一氧化氮(NO)是植物的重要生物活性分子,它参与植物生长发育的许多过程,如种子萌发、下胚轴伸长、叶扩展、根生长、侧根形成、细胞凋亡以及植物抗逆反应等。大量的证据表明,植物可以通过与动物NO合酶类似的酶产生NO。此外,植物还可通过硝酸还原酶产生NO。NO在植物中的信号传递途径仍不十分清楚,植物有可能采用与动物相类似的机制。由于植物的大多数生长发育现象都受到植物激素的调节和控制,NO与植物激素之间的关系也受到越来越多的关注。通过激素起作用可能是植物内源NO作用的机理之一。     

Plant functional diversity mediates the effects of vegetation and soil properties on community-level plant nitrogen use in the restoration of semiarid sandy grassland

Species-rich plant communities use nitrogen (N) more efficiently in grassland ecosystems; however, the role of plant functional diversity in affecting community level plant N-use has received little attention. We examined plant N content, stock and N-use efficiency at community-level along a restoration gradient of sandy grassland (mobile dune, semi-fixed dune, fixed dune and grassland) in Horqin Sand Land, northern China. We used the functional trait-based approach to examine how plant functional diversity, reflected by the most abundant species’ traits (community-weighted mean, CWM) and the dispersion of functional trait values (FDis), affected N-use efficiency in sandy grassland restoration. We further used the structure equation model (SEM) to evaluate the direct or indirect effects of plant species richness, biomass, functional diversity and soil properties on community-level plant N-use efficiency. We found that plant biomass and its N stock increased following sandy grassland restoration, and there were lower plant N content and higher N-use efficiency in semi-fixed dune, fixed dune and grassland as compared with mobile dune. N-use efficiency was positively associated with plant species richness, biomass, CWM plant height, CWM leaf C:N, FDis and soil gradient, but SEM results showed that species richness, CWM leaf C:N, plant biomass and FDis controlled by soil properties were the main factors exerting direct effects. CWM plant height also had a positive effect on N-use efficiency through its indirect effect on plant biomass. Soil gradient increased N-use efficiency through an indirect effect on vegetation rather than a direct effect. Final SEM models based on different plant functional diversity explained over 74% of variances in N-use efficiency. Effects of plant functional diversity on N-use efficiency supported both the mass ratio hypothesis and the complementarity hypothesis. Our results clearly highlight the important role of plant functional diversity in mediating the effects of vegetation and soil properties on community level plant N-use in sandy grassland ecosystems.     

The plant cover of Russia in the area of the Braun-Blanquet syntaxonomy: the development of an approach and the results

Theoretical basis of ecologo-floristic classification according to Braun-Blanquet approach is discussed with the special attention to the contribution of Russian scientists. Principal results concern presentation of vegetation continuum in discrete classification units: polymodal conception of plant communities, principle of plural syntaxonomic decisions, pragmatic approach to classification, method of homological rows of plant communities, etc. Current ecologo-floristic classification of vegetation in Russia consists of 77 classes. This system is a good basement for estimation of rarity of plant communities and biodiversity protection. The first variant of "Red Book" of plant communities of Russia and other eastern European countries is discussed.     

Impact of the Tihange nuclear power plant on the periphyton and the phytoplankton of the Meuse River (Belgium)

A survey was made from 1976 to 1981 of the possible effects of Tihange nuclear power plant on the Meuse river. Phytoplankton and periphyton were affected only during low water flow. Both decreases and increases of biomass were recorded for phytoplankton but, for periphyton, only increases. The structure of diatom communities is affected downstream of the plant during low water flow, because sensitive species are replaced by more tolerant ones. In the reach downstream of the plant, the maximum observed temperature increase is 4.2 °C and the maximum decrease in dissolved oxygen is 15%. Except for these two parameters immediately below the plant, any changes observed cannot be attributed solely to the nuclear power plant, but rather to the combination of thermal effects with effluents from other industries which together contribute to the more significant changes observed further downstream.     

结构植物学在中国的五十年发展

结构植物学由植物解剖学发展而来,是植物学的一个重要分支学科.本文根据其近代的发展,分别就植物发育解剖学向植物发育生物学的发展、植物比较解剖学向植物系统发育生物学的发展,以及环境生态结构植物学三个主要部分简要介绍了50年来在我国的发展,并对它们的发展趋势进行了预测.     

结构植物学在中国的五十年发展

结构植物学由植物解剖学发展而来 ,是植物学的一个重要分支学科。本文根据其近代的发展 ,分别就植物发育解剖学向植物发育生物学的发展、植物比较解剖学向植物系统发育生物学的发展 ,以及环境生态结构植物学三个主要部分简要介绍了 5 0年来在我国的发展 ,并对它们的发展趋势进行了预测     

青蒿素含量与土壤、植株养分含量关系的研究

调查和分析测定同一产区不同土壤类型的黄花蒿土壤和植株不同部位的养分含量及青蒿素含量,并对其进行相关分析和因子分析,结果表明,青蒿素含量与土壤Ca的含量有显著的正相关关系,与根N、茎N素含量以及植株地下部和地上部的N素含量比有显著的负相关关系,与茎部和叶部的N素含量比有极显著负相关关系;黄花蒿植株叶片的N含量与土壤P含量有显著的正相关关系;影响青蒿素含量的主要因子是黄花蒿植株体内的养分含量,其次是土壤的养分含量以及土壤和植株等综合因子。通过施肥、适当补充土壤中的Ca和P素营养,改善土壤养分状况等各种途径来调节植株体内的养分,降低地下部和地上部的N素含量比值,茎叶部N素含量比值,提高青蒿素的含量,增施K肥,有利于黄花蒿的生长。     

New insights into the role of plant formins: regulating the organization of the actin and microtubule cytoskeleton

Formins are well-known as important regulators participating in the organization of the actin cytoskeleton in organisms. For many years in the past, research on plant formins is more difficult than that in other eukaryotic formins and is limited to class I formins. Nevertheless, positive progress has been made in plant formin research recently, especially the investigations on class II formins. New functions of plant formins are identified gradually, such as regulating cell division and affecting diffuse cell expansion. More significantly, plant formins are also verified to interact with microtubules in vivo and in vitro. They may probably function as linking proteins between microtubules and microfilaments to participate in various cellular processes.     

Effects of exotic grass invasion on spatial heterogeneity in the ground-layer of grassy woodlands

We quantified the effects of exotic annual grass invasion on the ground-layer structure of grassy eucalypt woodlands, with the aim of determining if weed invasion decreased gap size and plant basal area leading to reduced spatial heterogeneity. We measured plant density, distance between plants and basal plant area in woodland sites which ranged from zero to 100% exotic plant cover in the ground-layer. The ground-layer in uninvaded woodlands was heterogeneous, with a large variation in basal plant area and distance between plants. Exotic annual grass density was positively correlated with total plant density, whereas native plant density was negatively correlated. Total plant basal area decreased as total plant density increased, with a lower total plant area in exotic dominated transects compared to native dominated. Variation in basal plant area decreased with increasing plant density. Exotic annual grasses were more closely spaced together (smaller gap size) and had a smaller basal area than the native grasses and rushes. There was also less variation in basal area and gap size with individual exotic annual grasses compared to the native grasses. Inter-plant distance was greater for both the native and exotic grasses when they had native grasses neighbouring them instead of exotic grasses. These findings show that woodlands invaded by exotic annual grasses have relatively less spatial heterogeneity in the ground-layer. These results have implications for other aspects of perennial grassy ecosystems invaded by annual grasses, including plant recruitment and restoration strategies.     

Host identity and functional traits determine the community composition of the arbuscular mycorrhizal fungi in facultative epiphytic plant species

The epiphytic vascular mycobiota is scarce and facultative in semi-arid Mediterranean ecosystems. However, unlike in soil conditions, little is known about the factors driving mycorrhizal communities in epiphytic environments. Here, we investigated the arbuscular mycorrhizal fungi (AMF) harboured by 31 plant species occurring on the trunks of Phoenix dactylifera. We wanted to ascertain if host identity and plant functional traits shape mycorrhizal communities. Specifically, we tested the plant life-cycle (perennial versus annual), the plant life-form (herbaceous versus woody), the plant origin (exotic versus native) and the plant species. The plant affiliation to species strongly influenced the AMF community composition. Plant life-form and plant life-cycle also shaped indicator taxa. The AMF structure differed between annual and perennial species and higher AMF richness was detected in perennial plants. The epiphytic plants associated with AMF irrespective of whether they were native or not, probably because here no functional differences derive from plant origin.