Planktonic copepods of the Bras d'Or Lakes system,Nova Scotia,Canada

Fifteen species of planktonic copepods are recorded from Bras d'Or Lakes, Nova Scotia, Canada. Pseudocalanus minutus, Oithona similis, Temora longiremis, and Tortanus discaudatus are the dominant species. The distribution of planktonic copepods in Bras d'Or Lakes as well as in the adjacent Gulf of St. Lawrence is discussed.     

The effect of environmental conditions on Atlantic salmon smolts’ (<Emphasis Type="Italic">Salmo salar</Emphasis>) bioenergetic requirements and migration through an inland sea

The timing of the juvenile Atlantic salmon ocean-entry is considered a critical stage in the species’ life-history. Entry into the ocean at suboptimal times can have negative survival impacts on entire smolt cohorts. Previous studies have identified smolt residency time in the Bras d’Or Lakes as highly variable and correlated with body condition. This study combines energetic modelling using Dynamic Energy Budget (DEB) theory with acoustic telemetry to mechanistically link smolt bioenergetics to their migration strategy within the Bras d’Or. This study examines two main questions: 1) what is the relationship between smolts’ bioenergetics and smolts’ migration strategy, and 2) what effect would warmer water temperature have on smolts’ energetic requirements? Simulation results indicate that smolts requiring more food are more likely to exit the Bras d’Or during the observation period. The results also suggest higher lake temperature would result in faster depletion of smolt energy reserves, which is predicted to favour smolts migrating to the ocean sooner.     

Temporal stability and assignment power of adaptively divergent genomic regions between herring (Clupea harengus) seasonal spawning aggregations

Atlantic herring (Clupea harengus), a vital ecosystem component and target of the largest Northwest Atlantic pelagic fishery, undergo seasonal spawning migrations that result in elusive sympatric population structure. Herring spawn mostly in fall or spring, and genomic differentiation was recently detected between these groups. Here we used a subset of this differentiation, 66 single nucleotide polymorphisms (SNPs) to analyze the temporal dynamics of this local adaptation and the applicability of SNP subsets in stock assessment. We showed remarkable temporal stability of genomic differentiation corresponding to spawning season, between samples taken a decade apart (2005 N = 90 vs. 2014 N = 71) in the Gulf of St. Lawrence, and new evidence of limited interbreeding between spawning components. We also examined an understudied and overexploited herring population in Bras d'Or lake (N = 97); using highly reduced SNP panels (N_SNPs > 6), we verified little‐known sympatric spawning populations within this unique inland sea. These results describe consistent local adaptation, arising from asynchronous reproduction in a migratory and dynamic marine species. Our research demonstrates the efficiency and precision of SNP‐based assessments of sympatric subpopulations; and indeed, this temporally stable local adaptation underlines the importance of such fine‐scale management practices.     

Fishing,predation, and temperature drive herring decline in a large marine ecosystem

Since 1960, landings of Atlantic herring have been the greatest of any marine species in Canada, surpassing Atlantic cod and accounting for 24% of the total seafood harvested in Atlantic Canada. The Scotian Shelf‐Bay of Fundy herring fisheries (NAFO Division 4VWX) is among Canada''s oldest and drives this productivity, accounting for up to 75% of the total herring catch in some years. The stocks’ productivity and overall health have declined since 1965. Despite management measures to promote recovery implemented since 2003, biomass remains low and is declining. The factors that drive the productivity of 4VWX herring are primarily unresolved, likely impeding the effectiveness of management actions on this stock. We evaluated potential drivers of herring variability by analyzing 52 time‐series that describe the temporal and spatial evolution of the 4VWX herring population and the physical, ecological, and anthropogenic factors that could affect them using structural equation models. Variation in herring biomass was best accounted for by the exploitation rate''s negative effect and the geographic distribution of fishing and recruitment. Thermal phenology and temperature adversely and egg predation positively impacted the early life stage mortality rate and, ultimately, adult biomass. These findings are broadly relevant to fisheries management, but particularly for 4VWX herring, where the current management approach does not consider their early life stage dynamics or assess them within the ecosystem or climate change contexts.     

Diet of Atlantic cod in the southern Gulf of St Lawrence as an index of ecosystem change, 1959–2000

Major temporal changes in the importance of euphausiids and Atlantic herring Clupea harengus in the diet of Atlantic cod Gadus morhua , 10–75 cm L _F, occurred in shallow waters (<100 m depths) of the southern Gulf of St Lawrence between 1959 and 2000. Euphausiids represented 6–70% of prey mass for Atlantic cod 31–60 cm L _F from 1959 to 1987 but only trace amounts were detected in stomachs collected from 1990 to 2000. Mysids and gammarid amphipods (for Atlantic cod ≤45 cm L _F), and Atlantic herring (for Atlantic cod >45 cm L _F) largely replaced euphausiids in the Atlantic cod diets from 1990 to 2000. This diet change suggested there has been a major perturbation of the food web of the southern Gulf of St Lawrence. The importance of fishes (mostly Atlantic herring) in the diet of Atlantic cod >45 cm L _F increased significantly between the periods 1959–1980 and 1987–2000. Atlantic herring comprised 0–4% (mean 1.3%) of prey mass of Atlantic cod 46–60 cm L _F from 1959 to 1980 and increased to 2–42% (mean 19.6%) of the diet from 1987 to 2000. Atlantic herring comprised 0–25% (mean 9.4%) of the prey mass of Atlantic cod 61–75 cm L _F from 1959 to 1980 and increased to 42–81% (mean 54.2%) of prey mass from 1987 to 2000. This increased consumption of Atlantic herring was consistent with observed changes in abundance of Atlantic herring in the ecosystem between the late 1970s and 2000. The large changes in consumption of euphausiids and Atlantic herring represent highly significant changes and would need to be included in the development and interpretation of ecosystem-based management models for this ecosystem.     

Movement,site fidelity and connectivity in a top marine predator,the killer whale

Movement, site fidelity and connectivity have important consequences for the evolution of population structure and therefore the conservation and management of a species. In this study photographs of naturally marked killer whales collected from sites across the Northeast Atlantic are used to estimate fidelity to sampling locations and movement between locations, expressed as transition probabilities, pt, using maximum likelihood methods. High transition probabilities suggest there is high inter-annual site fidelity to all locations, and large-scale movement between the spawning and wintering grounds of both Norwegian and Iceland stocks of Atlantic herring. There was no evidence of movement between the Norwegian herring grounds and Icelandic herring grounds, or between the mackerel fishing grounds and the herring fishing grounds. Thus the movement of predictable and abundant prey resources can lead to intrinsic isolation in this species We also find movement between the Northern Isles, Scotland and East Iceland. An association network indicates that killer whales predating seals around the Northern Isles, Scotland are linked to the community of killer whales that follow the Icelandic summer-spawning herring. This adds support to existing evidence of a broad niche width in some populations.     

Introgressive hybridization between the Atlantic and Pacific herring (<Emphasis Type="Italic">Clupea harengus</Emphasis> and <Emphasis Type="Italic">Clupea pallasii</Emphasis>) in the White Sea,Barents and Kara Seas evidenced by microsatellites

In the North of Europe two sister species of herring—the Atlantic Clupea harengus and Pacific Clupea pallasii have post-glacially come into secondary contact. Although the breeding areas of the two species are thought to be separate, previous genetic studies based on allozyme and mitochondrial DNA data have supported the existence of introgression from the Atlantic herring to the Pacific herring. In this study, we employed microsatellite markers to explore the extent of introgressive hybridization between these fishes. Bayesian methods for assigning individuals to populations and identifying admixture proportions were applied to the genetic data based on ten microsatellites. Results indicated that 18 out of 464 Pacific herring (3.88%) were likely admixed. Some of the hybrid individuals contained genotypes suggesting that introgressive hybridization is an ongoing process. Despite some admixture, the Atlantic and Pacific herring gene pools remain sharply distinct (the average proportions of membership to “Atlantic” and “Pacific” clusters were Q_A = 0.998 and Q_P = 0.974, respectively), suggesting that hybridization was not frequent. The discovery of introgression among herring species opens new questions about the mechanisms underlying the observed pattern of genetic population differentiation in the North European Pacific herring.     

The nomenclature of the Pacific herring, Clupea pallasü Valenciennes, 1847

Confusion over the nomenclature of the Pacific herring is shown to have stemmed from the comparison of it with White Sea herring which was mistakenly assumed to be conspecific with Atlantic herring.     

Discovery and characterization of single nucleotide polymorphisms in two anadromous alosine fishes of conservation concern

Freshwater habitat alteration and marine fisheries can affect anadromous fish species, and populations fluctuating in size elicit conservation concern and coordinated management. We describe the development and characterization of two sets of 96 single nucleotide polymorphism (SNP) assays for two species of anadromous alosine fishes, alewife and blueback herring (collectively known as river herring), that are native to the Atlantic coast of North America. We used data from high‐throughput DNA sequencing to discover SNPs and then developed molecular genetic assays for genotyping sets of 96 individual loci in each species. The two sets of assays were validated with multiple populations that encompass both the geographic range and the known regional genetic stocks of both species. The SNP panels developed herein accurately resolved the genetic stock structure for alewife and blueback herring that was previously identified using microsatellites and assigned individuals to regional stock of origin with high accuracy. These genetic markers, which generate data that are easily shared and combined, will greatly facilitate ongoing conservation and management of river herring including genetic assignment of marine caught individuals to stock of origin.     

Use of Herring Bait to Farm Lobsters in the Gulf of Maine

Background

Ecologists, fisheries scientists, and coastal managers have all called for an ecosystem approach to fisheries management, yet many species such as the American lobster (Homarus americanus) are still largely managed individually. One hypothesis that has yet to be tested suggests that human augmentation of lobster diets via the use of Atlantic herring (Clupea harengus) as bait may contribute to recent increases in lobster landings. Currently 70% of Atlantic herring landings in the Gulf of Maine are used as bait to catch lobsters in traps throughout coastal New England.

Methodology/Principal Findings

We examined the effects of this herring bait on the diet composition and growth rate of lobsters at heavily baited vs. seasonally closed (i.e., bait free) sites in coastal Maine. Our results suggest that human use of herring bait may be subsidizing juvenile lobster diets, thereby enhancing lobster growth and the overall economic value and yield of one of the most valuable fisheries in the U.S.

Conclusions/Significance

Our study illustrates that shifting to an ecosystem approach to fisheries management should require consideration of cross-fishery interactions.     

Geographical variation in the yellow‐legged gull: introgression or convergence from the herring gull?

Yellow-legged gulls Larus michahellis from the Atlantic Iberian coast exhibit some phenotypic similarities with the herring gull L. argentatus from Western Europe. To assess this phenomenon and its possible origin, we compared Mediterranean yellow-legged gulls, Atlantic Iberian yellow-legged gulls and herring gulls for several phenotypic traits (morphology, plumage), and used genetic data to determine the evolutionary history of the Atlantic Iberian yellow-legged gulls. Data from mitochondrial cytochrome b gene and microsatellite loci clearly indicate that Atlantic Iberian gulls are closely related to Mediterranean yellow-legged gulls, and do not show stronger signs of introgression with herring gulls relative to other populations of yellow-legged gulls. Atlantic Iberian yellow-legged gulls are more similar to herring gulls in body size and shape than to other yellow-legged gulls populations, but not in mantle colour and wing-tip pattern. Body size and other phenotypic and life history similarities with the herring gull ( L. argentatus argenteus ) such as voice, winter plumage and breeding phenology, previously described in several studies, might thus be interpreted as convergent characters. Within the yellow-legged gull, the high F _st-values obtained from four nuclear microsatellite loci indicate substantial population structure and reduced levels of gene flow between gull populations in Mediterranean France and Atlantic Iberia. Differences among these populations in breeding phenology and migration patterns, likely resulting from different local selection pressures, might contribute to this low level of gene flow.     

Screening for Viral Hemorrhagic Septicemia Virus in Marine Fish along the Norwegian Coastal Line

Viral hemorrhagic septicemia virus (VHSV) infects a wide range of marine fish species. To study the occurrence of VHSV in wild marine fish populations in Norwegian coastal waters and fjord systems a total of 1927 fish from 39 different species were sampled through 5 research cruises conducted in 2009 to 2011. In total, VHSV was detected by rRT-PCR in twelve samples originating from Atlantic herring (Clupea harengus), haddock (Melanogrammus aeglefinus), whiting (Merlangius merlangus) and silvery pout (Gadiculus argenteus). All fish tested positive in gills while four herring and one silvery pout also tested positive in internal organs. Successful virus isolation in cell culture was only obtained from one pooled Atlantic herring sample which shows that today''s PCR methodology have a much higher sensitivity than cell culture for detection of VHSV. Sequencing revealed that the positive samples belonged to VHSV genotype Ib and phylogenetic analysis shows that the isolate from Atlantic herring and silvery pout are closely related. All positive fish were sampled in the same area in the northern county of Finnmark. This is the first detection of VHSV in Atlantic herring this far north, and to our knowledge the first detection of VHSV in silvery pout. However, low prevalence of VHSV genotype Ib in Atlantic herring and other wild marine fish are well known in other parts of Europe. Earlier there have been a few reports of disease outbreaks in farmed rainbow trout with VHSV of genotype Ib, and our results show that there is a possibility of transfer of VHSV from wild to farmed fish along the Norwegian coast line. The impact of VHSV on wild fish is not well documented.     

Introgressive Hybridization in the Secondary Contact Area of the Atlantic Herring Clupea harengus and the Pacific Herring C. pallasii (Clupeidae): Ecological Basis,Geographical Structure,and Temporal Variability of the Hybridization Zone

Journal of Ichthyology - The geographical structure and dynamics of introgressive hybridization with Atlantic herring Clupea&nbsp;harengus were studied for the Pacific herring Clupea pallasii...     

Population structure of Atlantic herring, Clupea harengus L.

During the last decade, genetic studies have been carried out on samples of Atlantic herring, CIupea harengus L., from the Baltic, North Sea, British Isles, Norwegian sea-waters and in the western part of the North Atlantic Ocean. Based on direct comparisons of samples drawn from several areas, the available information on allozyme variation was compiled into a comparable data set and analysed for population structure and genetic distance. The results are discussed in relation to the present stock model for herring.     

Avian thyroid development in chemically contaminated environments: is there evidence of alterations in thyroid function and development?

Poor reproductive success, developmental abnormalities, and behavioral alterations in fish-eating birds in some Great Lakes areas have led to more than 35 years of toxicological studies and residue monitoring of herring gull (Larus argentatus) populations. Polyhalogenated aromatic hydrocarbons (PHAHs), especially polychlorinated biphenyls (PCBs), are widespread contaminants in the Great Lakes ecosystem. The introduction of regulations and elimination of point sources since the 1970s have resulted in decreased PHAHs in fish-eating bird eggs and tissues. PCB exposure is associated with thyroid disruption (hypothyroidism) in mammals, but much less is known of PCB effects on avian thyroid function. Our 1998-2000 studies of herring gulls from the Great Lakes show that both pipping embryos and prefledglings from highly contaminated sites have marked depletion of thyroid gland hormone stores compared with similarly aged gulls at the reference sites. However, organismal hypothyroidism was not apparent in many embryo and chick collections where severe depletion of thyroid gland hormone was observed. Adults, sampled at two high PCB sites and a low PCB site in the Great Lakes and the maritime reference colony in 2001, showed no differences in organismal thyroid status across sites, but gulls from the high sites had enlarged thyroid glands and depressed thyroid gland hormone stores. Here we discuss the evidence that ecological exposure to PHAHs are responsible for thyroid deficiencies in gulls and that during development these deficiencies lead to developmental abnormalities in young gulls from highly contaminated Great Lakes sites.     

Associations between wintering avian predators and schooling fish in the Skagerrak-Kattegat suggest reliance on predictable aggregations of herring Clupeaharengus

We investigated the distributional dynamics of piscivorous seabirds in relation to the distribution of young fish outside the breeding season in the Skagerrak and Kattegat, using synoptic bottom trawl and seabird surveys. Kittiwake Rissa tridactyla , Common Guillemot Uria aalge and Razorbill Alca torda were significantly correlated with herring Clupea harengus abundance at coarse spatial scales (>20 km). The association between the three seabird species and other abundant fish species like sprat Sprattus sprattus , whiting Merlangius merlangus and Norway pout Trisopterus esmarki was considerably weaker. In the Skagerrak and Kattegat, the location of aggregations of immature herring during winter is relatively stable and predictable. The correlation with herring and the lack of correlation with the abundant, but less stable occurrence of sprat of similar caloric value suggest that the tendency among piscivorous seabirds to depend on predictable concentrations of prey during the breeding season is a common feature during the non-breeding season as well. The results are discussed in relation to ecological and winter habitat characteristics of wintering piscivorous seabirds in the eastern North Atlantic, and in relation to the management and conservation of nursering herring in the Skagerrak and Kattegat.     

Photomicrographic atlas of Atlantic herring embryonic development

The development of the Atlantic herring is related to a staging series intended to provide a standard background for studies of herring embryonic development. The series is based on herring embryos from the Isle of Man (Irish Sea) stock reared at 8°C. The stages are named rather than numbered in order to simplify usage and the series has been sub-divided into five periods: zygote and cleavage, blastula, gastrula, segmentation, and organogenesis.     

Development and function of the swimbladder-inner ear-lateral line system in the Atlantic menhaden,Brevoortia tyrannus (Latrobe)*

The swimbladder-acoustico-lateralis system of the Atlantic menhaden, Brevoortia tyrannus, is described and compared with that of the Atlantic herring, Clupea harengus. The system develops in the larva at a much earlier stage than the herring, being functional by about 2 mm tl. The volume of the gas-filled pro-otic bullae is five times that of the herring, and the gas ducts to the swimbladder, instead of being short and separate, are three times the length and join to form a common duct well in front of the swimbladder. The menhaden swimbladder is baggy and totally compliant when subjected to pressure changes. There is no toughened anterior end as in the herring, but the swimbladder is steeply angled in the body cavity, causing gas to collect at the anterior end after a pressure increase, unless the fish is diving very steeply. The guanine content of the swimbladder is comparable with that of the herring and makes the wall very impervious to gas diffusion. When subjected to quick pressure increases and decreases, the pro-otic membrane returns to its flat position with a time constant of 31-44 s. Very large quick pressure changes of about 3 atm burst the pro-otic membrane in adult fish but not in larvae.     

Otolith variation in Pacific herring (<Emphasis Type="Italic">Clupea pallasii</Emphasis>) reflects mitogenomic variation rather than the subspecies classification

Pacific herring (Clupea pallasii) is divided into three subspecies: two in northeast Europe and one in the north Pacific Ocean. Genetic studies have indicated that the populations in northeast Europe have derived from the northwest Pacific herring recently, or during the last 10–15 kyr, and that they are distinct from the population in the northeast Pacific. In addition, hybridization between the Pacific herring and the Atlantic herring has been documented. Otolith variation has been considered to be largely affected by environmental variation, but here we evaluate whether the genetic differentiation is reflected in otolith shape differences. A clear difference in otolith shape was observed between the genetically differentiated herring species Clupea harengus from the Atlantic and C. pallasii. The otolith shape of C. p. suworowi in the Barents Sea was different from the shape of C. pallasii in northern Norway and C. p. pallasii from the Pacific. Populations of C. p. pallasii, sampled east and west of the Alaska Peninsula, which belong to two genetically different clades of the C. p. pallasii in the Pacific Ocean, show a clear difference in otolith shape. C. p. suworowi and the local C. pallasii peripheral population in Balsfjord in northern Norway are more similar to the northwest Pacific herring (C. p. pallasii) than to the northeast Pacific herring (C. p. pallasii), both genetically and in otolith shape. The Balsfjord population, known to be influenced by introgression of mtDNA from the Atlantic herring, does not show any sign of admixture in otolith shape between the two species. A revised classification, considering the observed genetic and morphological evidence, should rather group the northwest Pacific herring in the Bering Sea together with the European populations of C. pallasii than with the northeast Pacific herring in the Gulf of Alaska.     

Pacific and Atlantic herring produce burst pulse sounds

The commercial importance of Pacific and Atlantic herring (Clupea pallasii and Clupea harengus) has ensured that much of their biology has received attention. However, their sound production remains poorly studied. We describe the sounds made by captive wild-caught herring. Pacific herring produce distinctive bursts of pulses, termed Fast Repetitive Tick (FRT) sounds. These trains of broadband pulses (1.7-22 kHz) lasted between 0.6 s and 7.6 s. Most were produced at night; feeding regime did not affect their frequency, and fish produced FRT sounds without direct access to the air. Digestive gas or gulped air transfer to the swim bladder, therefore, do not appear to be responsible for FRT sound generation. Atlantic herring also produce FRT sounds, and video analysis showed an association with bubble expulsion from the anal duct region (i.e. from the gut or swim bladder). To the best of the authors' knowledge, sound production by such means has not previously been described. The function(s) of these sounds are unknown, but as the per capita rates of sound production by fish at higher densities were greater, social mediation appears likely. These sounds may have consequences for our understanding of herring behaviour and the effects of noise pollution.