Fish, Flows and Flood Plains: Links between Freshwater Fishes and their Environment in the Murray-Darling River System, Australia

Knowledge of the biology of native fishes of the Murray-Darling Basin is based largely on studies conducted under hatchery conditions and on a limited number of recreationally important species. From observations that increases in water level in aquaculture ponds initiate spawning in some species, and from limited studies of wild fishes and studies in overseas floodplain river systems, a perception has emerged of the importance of flooding and the flood plain in the life cycles of Murray-Darling fishes in general. However, there is little confirmatory evidence of the use of temporary floodplain habitats by larvae, juveniles or adults. The significance of in-channel habitats, especially for rearing, has received little attention. Murray-Darling fish species can be placed into three life history modes, based mainly on spawning style and time and developmental intervals of larvae at first feeding. Fish in each group may be able to take advantage of floods if the timing is right and prey are plentiful, however, the larvae of some species are able to recruit under non-flood conditions within the main river channel. This forms the basis of the low flow recruitment hypothesis, which attempts to explain why some species spawn during the warmest months and lowest flows and how they are able to recruit under these conditions. This hypothesis is then placed in the context of the current state of knowledge of the relationships between flow and the biology of Murray-Darling fishes, specifically cues for spawning, movement and recruitment. The lack of widespread evidence for floodplain use by any life history interval of fish may be due to a paucity of study, however, there are some fundamental factors, such as the predictability of timing and duration of high flow events as well as the lack of coincidence of high flows and high temperatures in some regions of the Basin, which may be important in determining the use of floodplain habitats by fish.     

Flow-related patterns in abundance and composition of the fish fauna of a degraded Australian lowland river

1. A 7‐year study was conducted in three hydrologically distinct sections within the highly regulated, lowland Campaspe River to investigate the influence of hydrology on temporal and spatial patterns in fish composition, abundance and recruitment. One section had 6 months, one section 2 months and one section no months of increased flow due to storage releases. The fish fauna of the less regulated, nearby Broken River served as a reference to which that of the Campaspe River was compared for the last 3 years of the study to allow insight into the relative effects of hydrology, barriers to movement and other environmental characteristics. The study included one high‐flow year, a moderate‐flow year and five low‐flow years. 2. A total of 16 fish species – 10 native and six alien – were caught in the Campaspe River, although of the native species, only three are considered to have self‐sustaining populations. The remaining species are either itinerants or a result of stocking. Alien species comprised approximately 64% of the total biomass of all fish caught. 3. Overall composition of the fish fauna did not differ significantly by year, but did by section of river. Species richness and the abundance of most of the dominant species also differed significantly by river section, but there was little inter‐annual variation in the abundance of any species, except for European perch and for common carp; the latter showing an increase in abundance following a high‐flow event during the spring of 2000 as a result of recruitment. 4. Overall faunal composition was not influenced by hydrology. However, multiple regression indicated that species richness, abundance of the dominant species and abundance of young‐of‐year (YOY) of golden perch, European perch and common carp all were influenced significantly by hydrological variables. The nature of the relationships was dependent on river section and hydrological season (‘winter’ or ‘spring/summer’). Of note was the result that the total abundance of fish and that of YOY common carp were significantly positively related to the number of spells above the threshold for movement upstream through the lower two weirs in the Campaspe River. Only one significant relationship between hydrological and fish‐related variables was found for the upper river section, whereas seven and five were found for the lower and middle sections respectively. 5. Comparisons with fish collected in the Broken River over 3 years suggest that the fauna of the Broken River is in a more natural state than that of the Campaspe River. Since the two rivers do not differ substantially in water quality, and since both contain significant weirs, which act as barriers to movement of fish, flow regulation is most likely to be the major reason for the poor state of the fauna in the Campaspe River.     

Consistent trophic patterns among fishes in lagoon and channel habitats of a tropical floodplain river: Evidence from stable isotopes

The relationship between food web dynamics and hydrological connectivity in rivers should be strongly influenced by annual flood pulses that affect primary production dynamics and movement of organic matter and consumer taxa. We sampled basal production sources and fishes from connected lagoons and the main channel of a low-gradient, floodplain river within the Orinoco River Basin in Venezuela. Stable isotope analysis was used to model the contribution of four basal production sources to fishes, and to examine patterns of mean trophic position during the falling-water period of the annual flood cycle. IsoSource, a multi-source mixing model, indicated that proportional contributions from production sources to fish assemblages were similar in lagoons and the main channel. Although distributions differed, the means for trophic positions of fish assemblages as well as individual species were similar between the two habitats. These findings contradict recent food web studies conducted in temperate floodplain rivers that described significant differences in trophic positions of fishes from slackwater and floodplain versus main channel habitats. Low between-habitat trophic variation in this tropical river probably results from an extended annual flood pulse (ca. 5 mo.) that allows mixing of sestonic and allochthonous basal production sources and extensive lateral movements of fishes throughout the riverscape.     

Environmental niche patterns of native and non-native fishes within an invaded African river system

To test ecological niche theory, this study investigated the spatial patterns and the environmental niches of native and non-native fishes within the invaded Great Fish River system, South Africa. For the native fishes, there were contrasting environmental niche breadths that varied from being small to being large and overlapped for most species, except minnows that were restricted to headwater tributaries. In addition, there was high niche overlap in habitat association among fishes with similar distribution. It was therefore inferred that habitat filtering-driven spatial organisation was important in explaining native species distribution patterns. In comparison, most non-native fishes were found to have broad environmental niches and these fishes showed high tolerance to environmental conditions, which generally supported the niche opportunity hypothesis. The proliferation of multiple non-native fishes in the mainstem section suggest that they form a functional assemblage that is probably facilitated by the anthropogenic modification of flow regimes through inter-basin water transfer. Based on the distribution patterns observed in the study, it was inferred that there was a likelihood of negative interactions between native and non-native fishes. Such effects are likely to be exacerbated by altered flow regime that was likely to have negative implications for native ichthyofauna.     

Use of seasonal freshwater wetlands by fishes in a temperate river floodplain

This study examined the use of freshwater wetland restoration and enhancement projects ( i.e . non-estuarine wetlands subject to seasonal drying) by fish populations. To quantify fish use of freshwater emergent wetlands and assess the effect of wetland enhancement ( i.e . addition of water control structures), two enhanced and two unenhanced emergent wetlands were compared, as well as two oxbow habitats within the Chehalis River floodplain. Eighteen fish species were captured using fyke nets and emigrant traps from January to the beginning of June, with the most abundant being three-spined stickleback Gasterosteus aculeatus and Olympic mudminnow Novumbra hubbsi . Coho salmon Oncorhynchus kisutch was the dominant salmonid at all sites. Enhanced wetlands, with their extended hydroperiods, had significantly higher abundances of yearling coho salmon than unenhanced wetlands. Both enhanced and unenhanced emergent wetlands yielded higher abundances of non-game native fishes than oxbow habitats. Oxbow habitats, however, were dominated by coho salmon. Fish survival in the wetland habitats was dependent on emigration to the river before dissolved oxygen concentrations decreased and wetlands became isolated and stranding occurred. This study suggests that wetland enhancement projects with an outlet to the river channel appear to provide fishes with important temporary habitats if they have the opportunity to leave the wetland as dissolved oxygen levels deteriorate.     

Vulnerability of Young White Sturgeon, Acipenser transmontanus, to Predation in the Presence of Alternative Prey

Synopsis We conducted laboratory trials to test the vulnerability of young white sturgeon, Acipenser transmontanus, to predation when an alternative prey was available. In trials with two species of predators, we observed two feeding patterns. When equal numbers of white sturgeon and goldfish, Carassius auratus, were available, prickly sculpins, Cottus asper, ingested more white sturgeon. Conversely, northern pikeminnow, Ptychocheilus oregonensis, ate more juvenile coho salmon, Oncorhynchus kisutch, than white sturgeon in three out of four sets of trials, but ate more white sturgeon in one set of trials. White sturgeon size and the availability of cover did not affect the proportions of prey species ingested. Our results indicate that predation may be affecting survival of white sturgeon larvae and juveniles in the wild and could be one factor limiting recruitment of young-of-the-year white sturgeon in some locations.     

Ontogenetic structure and distribution patterns of ichthyoplankton in the confluence zone of two river systems in the Eastern Amazon

The ontogenetic structure and longitudinal variability of ichthyoplankton in a confluence zone of two river systems in the Eastern Amazon were evaluated between December 2018 and April 2019, at the time 137 eggs and 7,687 larvae of fish were captured. Ichthyoplankton proved to be heterogeneous between sections of rivers with differences in the number of taxa and abundance. The assemblages were distinguished by a NMDS Analysis, a ANOSIM, a SIMPER and a CCA, they presented a spatial zonation pattern with strong distinction and variability in the composition of the species between the river systems, under strong influence of limnological variables. The assemblages were mainly represented by larvae of Clupeiformes and Perciformes in the clear waters of the Tapajós river and Characiformes and Siluriforms in the cloudy waters of the Amazon river, influenced by the existence of a limnological gradient. Larvae in more advanced development stages were predominant in the Tapajós river while early stages were dominant in the Amazon river. The confluence zone does not seem to be a spawning area, but it is an important transport site for the larvae to reach the nursery areas in the lower stretch of the Amazon river. The encounter of these two river systems seems to guarantee the survival and biological recruitment of several fish species.     

Coexisting mangrove-coral habitat use by reef fishes in the Caribbean

We conducted visual fish surveys in coexisting mangrove-coral (CMC) habitats in Panama to analyze the effect of coral presence in mangrove habitats on the fish assemblage. Our study revealed that CMC habitats harbor distinct fish assemblages compared to mangrove habitats without coral, with greater species richness and increased herbivore abundance. Abstract in Spanish is available with online material.     

Species–area relationship within benthic habitat patches of a tropical floodplain river: An experimental test

The curvilinear relationship between species richness and habitat area (species–area relationship (SAR)) is a fundamental ecological pattern. The relationship is often viewed from a long‐term perspective across relatively large spatial scales, reflecting a balance between immigration and extinction dynamics. We explored whether predictions of SAR also manifest over short time periods (days) in benthic habitat patches of a dynamic floodplain river where littoral faunal assemblages are continuously assembled and disassembled with changing water levels. We examined the relationship of patch size with faunal abundance (i.e. fish and aquatic invertebrates), taxonomic richness, trophic group richness and overall assemblage composition. Strong taxa–area relationships emerged despite the relatively short experimental time period (21 days); larger patches had more taxa and trophic groups. For the smallest patches, taxonomic richness was especially sensitive to abundance of individuals; abundance of individuals was a less important predictor of taxonomic and trophic group richness for the largest patches. Despite the relatively short time frame for study within this temporally dynamic ecosystem, our findings indicate a strong SAR for fishes and macroinvertebrates inhabiting patchy habitats in the littoral zone of this tropical river.     

Spatial and temporal dispersion patterns of golden perch, Macquaria ambigua, larvae in an artificial floodplain environment

Golden perch larvae were stocked into a pond and inundated floodplain system in south-eastem Australia to determine movement patterns of the larvae onto and off the floodplain area. A total of 428 larvae were caught moving from the floodplain into the pond whereas only 18 were collected moving in the reverse direction. Thirty one larvae were caught at open water sites in the pond and floodplain, but only three were collected from sites on the floodplain which provided shade, timber or water flow. Transect samples from the pond also yielded more larvae than samples from floodplain transects, indicating a distinct spatial dispersion pattern in favour of the pond.
Spatial dispersion patterns of golden perch larvae appear to correspond with gradients in water quality between the pond and floodplain habitats. Stratification occurred in the pond but did not develop on the floodplain. Water on the floodplain was cooler, harder and contained less oxygen than surface water from the pond. Die1 oscillations occurred in water temperature, pH, dissolved oxygen, carbon dioxide and acidity, but there was no significant corresponding pattern in the distribution of larvae.
Dispersion of golden perch larvae between pond and floodplain habitats is not random, and may be actively influenced by local-scale variations in water quality.     

Autumn use of woody snags by fishes in backwater and channel border habitats of a large river

Snags are important to fish communities in small rivers and streams, but their importance to fishes in large rivers has not been investigated. This study examined snag use by fishes during autumn in backwater and channel border habitats in the upper Mississippi River, and compared these to fish communities in reference sites without snags. Species assemblages differed significantly between backwater and channel border habitats, and between snag and reference sites within the channel border, likely responding to differences in substrate, depth, and current velocity. In both habitats, average fish biomass and abundance were higher (2 to 50 ×) at snag sites than at reference sites, but these differences were significant only for channel border biomass. Fish taxa richness differed between backwater and channel border habitats, but not between snag and reference sites. Most large piscivorous fishes (e.g., Micropterus spp., Stizostedion spp.), several insectivorous fishes (Lepomis macrochirus, Ambloplites rupestris, Minytrema melanops), and a few prey fishes (L. macrochirus, Notropis atherinoides) were significantly more abundant at snag sites than at reference sites, suggesting active selection of snags for foraging or protection. Snag quality, as assessed by a snag rating index, had a direct effect on attracting fish communities with greater biomass, especially within the channel border habitat. These results indicate that snags are important habitat for fish communities in both backwaters and channel border habitats of the upper Mississippi River.     

European water voles in a reconnected lowland river floodplain: habitat preferences and distribution patterns following the restoration of flooding

Water voles have suffered large population declines in the United Kingdom due to habitat degradation and predation by invasive American mink. Habitat restoration of floodplain wetlands could help to reverse this decline, but the detailed habitat preferences of water voles in these environments have not been well studied, and the impacts of restoration practices on water vole populations are not known. This study investigated the habitat preferences of water voles in a reconnected lowland river floodplain. The results show that water voles preferred wider water bodies, and taller and more diverse vegetation. The impact of flooding on water voles was also investigated by comparing their occurrence between two survey periods which were separated by large flood events, and by comparing distribution patterns before and after restoration. Contrary to previous reports, there was no observed negative impact of flood events on water vole distribution, which has slightly expanded since the floodplain was reconnected to the river in 2009. Overall this study demonstrates that restored wetlands can provide suitable habitat for water voles, and provides guidance on some of the factors which should be considered when designing floodplains for water vole conservation.     

Seasonal habitat use by warmwater fishes in a braided river,southwestern Japan: effects of spatiotemporal thermal heterogeneity

Ichthyological Research - In braided rivers, networks of groundwater-fed and surface-water dominated channels cause a high variability in stream water temperature in space and time. Water...     

Ontogenetic shifts in habitat use by the endangered Roanoke logperch (Percina rex)

1. Conservation of the federally endangered Roanoke logperch (Percina rex, Jordan and Evermann) necessitates protection of habitat that is critical for all age classes. We examined habitat use patterns of individual logperch to determine: (1) if age classes of logperch in the Nottoway and Roanoke Rivers exhibit habitat selectivity, (2) if age classes differ in habitat use, and (3) if ontogenetic patterns of habitat use differ between the Roanoke and Nottoway river populations. 2. In the summers of 2000 and 2001, we observed 17 young‐of‐year (YOY) logperch [<4 cm total length (TL)], 13 subadult logperch (4–8 cm TL), and 49 adult logperch (>8 cm TL) in the upper Roanoke River, and 40 subadult and 39 adult logperch in the Nottoway River, Virginia. 3. All size classes of Roanoke logperch demonstrated habitat selectivity and logperch used a wide range of habitats in the Roanoke and Nottoway rivers during ontogeny. Habitat use by logperch varied among age classes and between rivers. 4. In the Roanoke River, adult and subadult logperch primarily preferred run and riffle habitat, often over gravel substrate. Subadults were found in lower water velocities and slightly more embedded microhabitats than adults. YOY logperch were found in shallow, stagnant backwaters and secondary channels. In the Nottoway River, both adult and subadult logperch were found over sand and gravel in deep, low‐velocity pools and runs. Subadults were observed in slightly more silted, lower velocity habitat than adults. Shifts in habitat use were more distinct between age classes in the Roanoke River than the Nottoway River. 5. Successful conservation of this species will involve sound understanding of spatial variation in habitat use over logperch life history and preservation of the ecological processes that preserve required habitat mosaics.     

Large-scale patterns of host use by parasites of freshwater fishes

Organisms that are abundant locally in a habitat patch are commonly observed to be frequent regionally, or among patches. In parasites, species present in high numbers in host individuals are also present in many individuals in the host population. On a larger scale, however, when host species are considered as patches, we may expect the opposite pattern because of the cost of producing mechanisms to evade the immune responses of several host species. Thus parasite species exploiting many host species may achieve lower average abundance in their hosts than parasite species exploiting fewer host species. This prediction was tested with data from 188 species of metazoan parasites of freshwater fish, using a comparative approach that controlled for study effort and phylogenetic influences. A negative correlation was found between the number of host species used by parasites and their average abundance in hosts, measured as either prevalence or intensity of infection. There was no evidence that parasite species fall into distinct categories based on abundance patterns, but rather that they fall along a continuum ranging from a generally low abundance in many host species, to a generally high abundance in few host species. These results applied to both ecto- and endoparasites. The pattern observed suggests the existence of a trade-off between how many host species a parasite can exploit and how well it does on average in those hosts.     

All in the ears: unlocking the early life history biology and spatial ecology of fishes

Obtaining biological and spatial information of the early life history (ELH) phases of fishes has been problematic, such that larval and juvenile phases are often referred to as the ‘black box’ of fish population biology and ecology. However, a potent source of life‐history data has been mined from the earstones (otoliths) of bony fishes. We systematically reviewed 476 empirical papers published between 2005 and 2012 (inclusive) that used otoliths to examine fish ELH phases, which has been an area of increasing attention over this period. We found that otolith‐based research during this period could be split into two broad themes according to whether studies examined: (i) biological objectives related to intrinsic processes such as larval and juvenile age, growth and mortality, and/or (ii) spatial objectives, such as habitat use, dispersal and migration. Surprisingly, just 24 studies (5%) explored a combined biological–spatial objective by simultaneously exploiting biological and spatial information from otoliths, suggesting much more scope for such integrated research objectives to be answered via the use of multiple otolith‐based techniques in a single study. Mapping otolith analytical techniques across these two approaches revealed that otolith structural analysis was mainly used to investigate biological processes, while otolith chemical analyses were most often applied to spatial questions. Heavy skew in research effort was apparent across biomes, with most (62%) publications specific to marine species, despite comparable levels of species richness and the importance of freshwater taxa (just 15% of papers). Indeed, around 1% (380 species) of a possible 31400+ extant species were examined in our surveyed papers, with a strong emphasis on temperate marine species of commercial value. Potential model species for otolith‐based ELH ecology research are arising, with the eel genus Anguilla (24 studies) and the European anchovy Engraulis encrasicolis (14 studies) attracting more research effort than most other taxa. While there is a preponderance of common techniques (e.g. daily otolith increment counts, increment widths), novel techniques such as transgenerational marking and computed X‐ray tomography, are increasingly being applied in published studies. The application of an integrative approach based on a combination of emerging techniques and traditional methods holds promise for major advances in our understanding of ELH fish ecology and to shine light into the ‘black box’ of fish ecology.