Role of fungi in marine ecosystems

Marine fungi are an ecological rather than a taxonomic group and comprise an estimated 1500 species, excluding those that form lichens. They occur in most marine habitats and generally have a pantropical or pantemperate distribution. Marine fungi are major decomposers of woody and herbaceous substrates in marine ecosystems. Their importance lies in their ability to aggressively degrade lignocellulose. They may be important in the degradation of dead animals and animal parts. Marine fungi are important pathogens of plants and animals and also form symbiotic relationships with other organisms. The effect of disturbances on marine fungi is poorly investigated. Keystone marine species may exist, especially in mutualistic symbioses. However, as many saprophytes appear to carry out the same function simultaneously, they may be functionally redundant. The need for a concerted effort to investigate the biodiversity and role of marine fungi globally and on as many substrata as possible is presented.     

Ecology of mangrove fungi and their role in nutrient cycling: what gaps occur in our knowledge?

Recent investigations have increased our knowledge of the ecology of mangrove fungi. In this paper this information is reviewed with emphasis on biogeography, biodiversity, differences in the tropical and subtropical mycoflora, fungal distribution on mangroves trees, host specificity, vertical zonation and distribution with salinity. Gaps in our knowledge are discussed. There is little knowledge of the role of mangrove fungi in nutrient cycling which is also reviewed. Areas in which knowledge is deficient include quantification techniques for fungal abundance, the nature and activities of fungal extracellular enzymes and fungal modification of mangrove detritus matter, especially the dissolved form.     

The functional role of burrowing bivalves in freshwater ecosystems

1. Freshwater systems are losing biodiversity at a rapid rate, yet we know little about the functional role of most of this biodiversity. The ecosystem roles of freshwater burrowing bivalves have been particularly understudied. Here we summarize what is known about the functional role of burrowing bivalves in the orders Unionoida and Veneroida in lakes and streams globally. 2. Bivalves filter phytoplankton, bacteria and particulate organic matter from the water column. Corbicula and sphaeriids also remove organic matter from the sediment by deposit feeding, as may some unionids. Filtration rate varies with bivalve species and size, temperature, particle size and concentration, and flow regime. 3. Bivalves affect nutrient dynamics in freshwater systems, through excretion as well as biodeposition of faeces and pseudofaeces. Excretion rates are both size and species dependent, are influenced by reproductive stage, and vary greatly with temperature and food availability. 4. Bioturbation of sediments through bivalve movements increases sediment water and oxygen content and releases nutrients from the sediment to the water column. The physical presence of bivalve shells creates habitat for epiphytic and epizoic organisms, and stabilizes sediment and provides refugia for benthic fauna. Biodeposition of faeces and pseudofaeces can alter the composition of benthic communities. 5. There is conflicting evidence concerning the role of resource limitation in structuring bivalve communities. Control by bivalves of primary production is most likely when their biomass is large relative to the water volume and where hydrologic residence time is long. Future studies should consider exactly what bivalves feed upon, whether feeding varies seasonally and with habitat, and whether significant overlap in diet occurs. In particular, we need a clearer picture of the importance of suspension versus deposit feeding and the potential advantages and tradeoffs between these two feeding modes. 6. In North America, native burrowing bivalves (Unionidae) are declining at a catastrophic rate. This significant loss of benthic biomass, coupled with the invasion of an exotic burrowing bivalve (Corbicula), may result in large alterations of ecosystem processes and functions.     

Patterns in potassium dynamics in forest ecosystems

The biotic cycling of potassium (K) in forest systems has been relatively understudied in comparison with nitrogen (N) and phosphorus (P) despite its critical roles in maintaining the nutrition of primary production in forests. We investigated the ecological significance of K in forests from a literature review and data synthesis. We focused on (1) describing patterns of the effects of K availability on aboveground growth and change in foliar tissue of tree species from a variety of forests; and (2) documenting previously unreported relationships between hydrologic losses of K and N in forested watersheds from the Americas. In a review of studies examining tree growth under K manipulations/fertilizations, a high percentage (69% of studies) showed a positive response to increases in K availability in forest soils. In addition, 76% of the tree studies reviewed showed a positive and significant increase in K concentrations in plant tissue after soil K manipulation/fertilization. A meta-analysis on a subset of the reviewed studies was found to provide further evidence that potassium effects tree growth and increased tissue [K] with an effect size of 0.709 for growth and an overall effect size of 0.56. In our review of watershed studies, we observed that concentrations of K typically decreased during growing seasons in streams draining forested areas in the Temperate Zones and were responsive to vegetation disturbance in both temperate and tropical regions. We found a strong relationship (r2 = 0.42-0.99) between concentrations of K and N (another critical plant nutrient) in stream water, suggesting that similar mechanisms of biotic retention may control the flow of these nutrients. Furthermore, K dynamics appear to be unique among the base cations, e.g. calcium, magnesium, and sodium, because the others do not show similar seasonal patterns to K. We suggest that K may be important to the productivity and sustenance of many forests, and its dynamics and ecological significance warrant further study. We suggest that knowledge about the dynamics of this understudied element is imperative for our understanding patterns and processes in forest ecosystems.     

Hypothesis: the rate and scale of dispersal of freshwater diatom species is a function of their global abundance

We have analysed the geographical records of a representative selection of extant diatom species from a freshwater pond. The more often a species is recorded in the ecological literature, the greater is its apparent global distribution. One explanation is that the frequently recorded species are globally abundant, whereas species that are infrequently recorded are globally rare. We suggest a model in which random dispersal is the dominant force driving large-scale distribution of species, with the rate and scale of dispersal largely determined by global population size. Thus species that are locally rare or abundant are likewise rare or abundant worldwide. It is predicted that many of the rarer diatom species will, with additional sampling effort, be shown to have wide geographical distribution, but this requires intensive studies focused on revealing species that are normally cryptic. The argument in favour of endemic diatom species is untenable, because it is not possible to disprove their existence elsewhere in the biosphere.     

淡水鱼类功能生态学研究进展

在全球变化和人类活动的影响下,生物多样性正以前所未有的速度丧失,全球生物正经受第六次生物多样性危机。淡水生态系统是最脆弱的生态系统之一。淡水鱼类作为淡水生态系统的重要组成部分,承受着日趋严重的气候变化、栖息地退化、生物入侵和过度捕捞等压力,面临巨大的威胁。在此背景下,如何准确评估鱼类种群和群落对环境变化的响应,以及鱼类群落结构和功能的变化对生态系统功能的影响是淡水鱼类多样性和淡水生态系统保护的关键问题。近年来,淡水鱼类功能生态学的快速发展为解答这一问题提供了一个框架。系统地介绍了淡水鱼类功能生态学主要研究内容、方法、进展及其应用,并着重介绍了淡水鱼类功能特征及其与环境的关系、环境变化下的功能生态学响应研究。据此提出了淡水鱼类功能生态学未来的重点研究方向,指出了其在鱼类多样性保护和资源利用等领域的应用前景。     

Zoosporic fungi in freshwater ecosystems

A review of the modern state of knowledge of zoosporic fungi in freshwater plankton and benthos is given. The effects of abiotic factors upon the distribution and development of these fungi are discussed, along with the problem of the role zoosporic fungi play in lake ecosystems.     

Studies on species of fungi associated with mycotic infections of fish in a Nigerian freshwater fish pond

A survey was carried out on the species of fungi associated with mycotic infections of fish in a Nigerian freshwater fish pond. A total of 24 fungal species belonging to 6 genera of aquatic phycomycete were isolated from the infected fishes. Achlya racemosa, Aphanomyces laevis, Dictyuchus sterile, Saprolegnia ferax, S. litoralis and S. parasitica had 100% frequency of occurrence amongst the infected fishes. There were similarities in the species of fungi isolated from the infected fishes in the fish pond and those isolated from the hatchery. Of the infected fishes, Clarias lazera had the highest number of fungal isolates. It was followed by Tilapia zilli, then by Chanos chanos, Ethmalosa fimbriata and finally by Cyprinus carpio. The implications of the results obtained on the development of fish farming in Nigeria are discussed.     

Linking soil process and microbial ecology in freshwater wetland ecosystems

Soil microorganisms mediate many processes such as nitrification, denitrification, and methanogenesis that regulate ecosystem functioning and also feed back to influence atmospheric chemistry. These processes are of particular interest in freshwater wetland ecosystems where nutrient cycling is highly responsive to fluctuating hydrology and nutrients and soil gas releases may be sensitive to climate warming. In this review we briefly summarize research from process and taxonomic approaches to the study of wetland biogeochemistry and microbial ecology, and highlight areas where further research is needed to increase our mechanistic understanding of wetland system functioning. Research in wetland biogeochemistry has most often been focused on processes (e.g., methanogenesis), and less often on microbial communities or on populations of specific microorganisms of interest. Research on process has focused on controls over, and rates of, denitrification, methanogenesis, and methanotrophy. There has been some work on sulfate and iron transformations and wetland enzyme activities. Work to date indicates an important process level role for hydrology and soil nutrient status. The impact of plant species composition on processes is potentially critical, but is as yet poorly understood. Research on microbial communities in wetland soils has primarily focused on bacteria responsible for methanogenesis, denitrification, and sulfate reduction. There has been less work on taxonomic groups such as those responsible for nitrogen fixation, or aerobic processes such as nitrification. Work on general community composition and on wetland mycorrhizal fungi is particularly sparse. The general goal of microbial research has been to understand how microbial groups respond to the environment. There has been relatively little work done on the interactions among environmental controls over process rates, environmental constraints on microbial activities and community composition, and changes in processes at the ecosystem level. Finding ways to link process-based and biochemical or gene-based assays is becoming increasingly important as we seek a mechanistic understanding of the response of wetland ecosystems to current and future anthropogenic perturbations. We discuss the potential of new approaches, and highlight areas for further research.     

丛枝菌根真菌的生态分布及其影响因子研究进展

丛枝菌根(arbuscular mycorrhiza,AM)共生体系对于植物适应各种逆境胁迫具有重要积极作用。AM真菌还能够通过根外菌丝网络调节植物群落结构和演替,深刻影响生态系统结构和功能的稳定性。AM真菌生态生理功能的发挥主要取决于其生态适应性,明确AM真菌在不同环境中的多样性、生态适应性以及对各种生态因子的响应机制,是AM真菌资源管理、功能发掘与利用的前提。迄今为止,有关各种生态因子对AM真菌多样性的影响已有不少研究,但是AM真菌生态分布及其形成机制仍缺乏系统的研究和理论分析。综述了生物因子和非生物因子对AM真菌生态分布的影响,结合大型生物空间分布理论探讨了AM真菌生态分布规律和建成机制,分析了当前本研究领域所存在的问题和动向,以期推动相关研究进展。     

Biogeography and ecology of freshwater diatoms in Subantarctica: a review

Subantarctica is situated between the Antarctic and the Subtropical Convergence and consists of the islands in the southern Atlantic, Indian and Pacific Oceans. Diatoms are an important component of all Subantarctic aquatic, moss and soil habitats. Taxonomic studies reveal a high diversity and species richness in both the present-day and the fossil diatom flora. Planktonic diatoms are almost completely absent. A similarity analysis of the diatom composition from different localities in the southern zone (below 40°S) resulted in a biogeographical zonation. Three regions could be formed, based on their diatom composition: Subantarctica, Maritime Antarctica and the Antarctic Continent. The diatom communities in the different regions are all characterized by a high proportion of cosmopolitan species. A second feature of the southern diatom floras is the decreasing diversity when moving southwards.     

Synthesizing the role of epigenetics in the response and adaptation of species to climate change in freshwater ecosystems

Freshwater ecosystems are amongst the most threatened ecosystems on Earth. Currently, climate change is one of the most important drivers of freshwater transformation and its effects include changes in the composition, biodiversity and functioning of freshwater ecosystems. Understanding the capacity of freshwater species to tolerate the environmental fluctuations induced by climate change is critical to the development of effective conservation strategies. In the last few years, epigenetic mechanisms were increasingly put forward in this context because of their pivotal role in gene–environment interactions. In addition, the evolutionary role of epigenetically inherited phenotypes is a relatively recent but promising field. Here, we examine and synthesize the impacts of climate change on freshwater ecosystems, exploring the potential role of epigenetic mechanisms in both short‐ and long‐term adaptation of species. Following this wrapping‐up of current evidence, we particularly focused on bringing together the most promising future research avenues towards a better understanding of the effects of climate change on freshwater biodiversity, specifically highlighting potential molecular targets and the most suitable freshwater species for future epigenetic studies in this context.     

Microbial diversity and function in Antarctic freshwater ecosystems

Freshwater lakes occur through much of Antarctica and are characterized by short food chains dominated by microbes. Comparatively few studies have been made of continental freshwater lakes until recently, with the main emphasis being on the less extreme maritime Antarctic lakes. The wide range of trophic status seen at the northern extremes of the maritime Antarctic reduces markedly further south, but a wide range of micro-organisms occur throughout the latitudinal range. Information on seasonal and spatial patterns of microbial activity for freshwater lakes demonstrate rapid changes in community composition at certain times of year despite constant low temperatures. Benthic communities of cyanobacteria and bacteria are a feature of most lakes and are involved in a wide range of geochemical cycling. There is a need for more detailed taxonomic information on most groups and considerable potential for molecular studies.     

Nutrient translocation from green algal symbionts to the freshwater sponge Ephydatia fluviatilis

The symbiosis between the freshwater sponge Ephydatia fluviatilis and a chlorella-like green alga is not obligate and only occurs when the sponge grows in the light. The algae accumulate intracellular pools of sucrose and glucose and translocate between 9 and 17% of the total photosynthate to the host. The principal product translocated is glucose which is fed directly into the sponge metabolic pool. White sponges transplanted back into the river in the shade grew logarithmically with a mean doubling time of 12 days. Sponges transplanted into illuminated habitats did not grow. It is unknown how the sponge acquires its algal symbiont.     

Biodiversity of freshwater fungi

There are more than 600 species of freshwater fungi with more known from temperate, as compared to tropical regions. These includeca 340 ascomycetes, 300 deuteromycetes, and a number of lower fungi which are not discussed here.Aniptodera, Annulatascus, Massarina, Ophioceras andPseudohalonectria are common freshwater ascomycetes, which appear to be well adapted for this lifestyle either in their ascospore types or their competitive-degradative characters. The most common genera of wood-inhabiting deuteromycetes includeCancellidium, Dactylaria, Dictyosporium andHelicomyces. They are categorized into four groups depending on their form and life style: the ingoldian hyphomycetes; the aero-aquatic hyphomycetes; the terrestrial-aquatic hyphomycetes; and the submerged-aquatic hyphomycetes. The adaptations of aquatic fungi for their dispersal and subsequent attachment to new substrates are discussed.     

Rivers in peril inside and outside protected areas: a systematic approach to conservation assessment of river ecosystems

This paper establishes a framework within which a rapid and pragmatic assessment of river ecosystems can be undertaken at a broad, subcontinental scale, highlighting some implications for achieving conservation of river biodiversity in water‐limited countries. The status of river ecosystems associated with main rivers in South Africa was assessed based on the extent to which each ecosystem had been altered from its natural condition. This requires consistent data on river integrity for the entire country, which was only available for main rivers; tributaries were thus excluded from the analyses. The state of main river ecosystems in South Africa is dire: 84% of the ecosystems are threatened, with a disturbing 54% critically endangered, 18% endangered, and 12% vulnerable. Protection levels were measured as the proportion of conservation target achieved within protected areas, where the conservation target was set as 20% of the total length of each river ecosystem. Sixteen of the 112 main river ecosystems are moderately to well represented within protected areas; the majority of the ecosystems have very low levels of representation, or are not represented at all within protected areas. Only 50% of rivers within protected areas are intact, but this is a higher proportion compared to rivers outside (28%), providing some of the first quantitative data on the positive role protected areas can play in conserving river ecosystems. This is also the first assessment of river ecosystems in South Africa to apply a similar approach to parallel assessments of terrestrial, marine, and estuarine ecosystems, and it revealed that main river ecosystems are in a critical state, far worse than terrestrial ecosystems. Ecosystem status is likely to differ with the inclusion of tributaries, since options may well exist for conserving critically endangered ecosystems in intact tributaries, which are generally less regulated than main rivers. This study highlights the importance of healthy tributaries for achieving river conservation targets, and the need for managing main rivers as conduits across the landscape to support ecological processes that depend on connectivity. We also highlight the need for a paradigm shift in the way protected areas are designated, as well as the need for integrated river basin management plans to include explicit conservation visions, targets, and strategies to ensure the conservation of freshwater ecosystems and the services they provide.     

西藏真菌资源调查概况

西藏是我国生物多样性最丰富的地区之一,地形复杂,生境多样,孕育了极为丰富的真菌资源。本文归纳统计出西藏真菌总计185科551属2 599种,其中包括真菌高阶分类单元壶菌门12种、接合菌门20种、球囊菌门70种、子囊菌门764种和担子菌门1 733种,并对各门进行了物种数量分析,列出了优势科。西藏大型真菌资源丰富,共统计出食用菌468种、药用菌243种和毒菌135种,对这些代表类群进行了概述。在此基础上展望西藏真菌资源调查以及生物多样性研究的发展趋势,为相关工作提供参考。     

4. Geographic distribution of freshwater blue-green algae

The analysis of the currently available data for morphologically unambiguously defined freshwater blue-green algae indicates that besides (sub-)cosmopolitan species, taxa with a more restricted distribution also exist. Many of these have a holarctic or pantropic distribution. It is hypothesized that, besides the distribution of ecological niches, temperature is one of the main controlling factors restricting species to particular latitudinal zones. Furthermore, the presence of species with a regional distribution (endemics) can not be ruled out, indicating that other factors must be considered. The possible role of dispersal capacities and of dispersal rates in relation to the earth history and to the speciation of blue-green algae is discussed.     

Aerial diffusion of phytopathogenic fungi

Summary Aeriobiological studies are essential for understanding the distribution, ecology and deposition patterns of both phytopathogenic and nonpathogenic fungal spores which are carried away from their source. Many spores and conidia are devitalized during aerial transportation as a consequence of being exposed to atmospheric agents. Nonetheless, a sufficient number remain viable, causing infections of various kinds, some of which extremely serious and with an epidemic trend.In order to predict the onset of fungi-induced diseases, it is necessary to be able to determine the inoculum source of the pathogenic agent. As air is the main vector transporting pathogenic fungal spores and conidia, periodical monitoring is required. Thus, having established the critical stages of plant infection, necessary precautionary measures can be undertaken in order to control diseases onset and development.It is therefore necessary to gain a through understanding of spore takeoff and dispersal mechanisms so as to determine how the spores and conidia are transported by air currents onto the plants and how they cause infective impaction. Spores and conidia suspended in the atmosphere can be collected by means of appropriate traps filtering a predetermined amount of air at predetermined time intervals in order to be able to make predictions as to the possibility of plant infection. Volumetric air sampling allows not only to determine the concentration of spores and conidia in a given period of time but also to establish the hours of the day in which they are present in highest concentrations and in which therefore they are more liable to cause infection. This information may be used in estimating the incidence of disease symptoms, the duration of infection and the seriousness of the disease.On the basis of this data, mathematical models for predicting epidemics can be worked out.