Metastable gels: A novel application of Ogston theory to sickle hemoglobin polymers

Sickle hemoglobin differs from normal adult hemoglobin by its ability to polymerize, which occurs at relatively high concentrations since the solubility for polymerization is typically above 160 mg/ml. We have recently found that the gel formed by polymers is metastable if the gel is not centrifuged or aged for long times in that polymerization ceases before the monomer concentration has decreased from its original value to the solubility. We have proposed that this effect is due to the obstruction of ends by other polymers in the crowded gel. Here we use Ogston's theory describing spaces amid arrays of random rods to provide a framework for describing the failure of the polymers to propagate. We find good agreement between fiber diameter and minimum void spaces. This novel application of a well-established theoretical framework for crowding may apply to other dense gels as well.     

Fitting abnormal oxygen equilibrium curves of hemoglobin

A growing number of oxygen equilibrium curves for hemoglobin (Hb) mutants, post-translational modifications, or the binding of potent new effectors of Hb cannot be fitted adequately with the two-state model. Examples are curves showing double maxima in the derivative of the Hill plot, or slopes of less than unity. We present such examples of modified hemoglobins and strong effectors in this study and calculate at which substate level the two-state model differs from the data. Analysis of hemoglobin oxygen equilibrium curves is reconsidered using the two-state model extended to allow variation of the individual substate probabilities. In this way the effect on the equilibrium due to perturbations in energy of each substate can be studied as a diagnostic tool.     

Comparative least-squares analysis of hemoglobin oxygen equilibrium curves

The oxygen-binding properties of hemoglobin have been studied at 600 microM protein concentration with organic phosphate, and analyzed by a series of different nonlinear least-squares analysis methods to determine whether reports of negligibly small values of the third overall Adair parameter, A3, are consequences of the data or a product of the data analysis. Data from other laboratories were analyzed as well. The single most important factor in creating a measurement that yields a small A3 is the use of equally weighted fitting in the Adair equation, while end-weighted fitting generally yields a larger A3. Endpoint extrapolation is ruled out as a major cause of abnormal A3 values. Monte Carlo simulations of the 600 microM results suggest that, if a small A3 were present, end weighting is at least as sensitive to a small A3 as equal weighting. We conclude that equally weighted fitting of the tetrameric Adair equation is unable to resolve the upper asymptote of the oxygen-binding data, resulting in an unusually small value for A3.     

Interpretation of UV-survival curves of Aspergillus conidiospores

Semi-logarithmic dose-response curves for survival of UV-irradiated conidiospores of A. nidulans have an initial shoulder (at low doses) followed by a decline which becomes linear. To explain the initial shoulder and the resulting extrapolation number (log S intercept of the linear extrapolation line) a general model is presented, which includes multi-target (n) and multi-hit (h) effects and allows for the effect of initial repair and of a compound parameter k, which stands for inherent sensitivity of the spores and for dose received inside the spores. From experiments on (a) the modification of k (spore wall colour and shelter effects), (b) a repair-deficient strain (shoulderless) and (c) preincubation during which DNA-replication takes place, it is concluded that the shoulder is generated by initial repair rather than by a multi-hit nature of the cell-killing process. In experiments where k takes different values (sub a and c), notably the position of the point of intersection of the linear lines gives conclusive information. In general, the log S intercept of the linear extrapolation line cannot be used to estimate the target number.     

The linkage between oxygenation and subunit dissociation in human hemoglobin. Consequences for the analysis of oxygenation curves.

For human hemoglobin, a pronounced dependence of oxygenation curves upon protein concentration can be demonstrated experimentally in the range between 10(-4) and 2 X 10(-6) M heme. The effects of such protein concentration dependence upon analysis of saturation curves have been explored using a model-independent linkage analysis which incorporates the dissociation of tetramers to dimers. We have carried out stimulations of oxygenation curves representing a variety of energy distributions designed to cover a wide range of values which are relevant to known hemoglobin systems and experimental conditions. The resulting simulated oxygenation curves were analyzed by least-squares minimization procedures in terms of the tetramer binding isotherm to yield the four apparent Adair constants. These derived constants were compared with the originally assumed values used in the simulation in order to assess the extent to which their values may be altered by the presence of dimer. For each energy distribution the analysis has been carried out over a wide range of protein concentration. We have found that the presence of even small amounts of dimer that are necessarily present at the low protein concentrations commonly employed may have a devastating effect upon the reliability of Adair constant determinations. In addition to these simulated cases, we have analyzed two sets of highly precise experimental data from the literature in order to assess the degree to which constants obtained may have been influenced by the presence of dimer.     

Titration curves of interacting cytochrome b5 and hemoglobin by isoelectric focusing-electrophoresis.

A strong interaction between cytochrome b₅ and hemoglobin has been demonstrated by titration curves in isoelectric focusing — electrophoresis. The pH of maximum interaction is in the pH range 8.0–8.3, which suggests a predominant role of Lys of met hemoglobin in the binding to acidic amino acids of cytochrome b₅. The stoichiometry of the complex appears to be 1:1 (cytochrome b₅: hemoglobin subunit) with similar binding affinities for α and β chains.