北京城市蝴蝶蜜源植物网络特征及重要蜜源植物识别

物种间相互作用网络研究能为物种多样性的保护、城市生态系统稳定性的维持提供指导。基于群落水平的城市蝴蝶蜜源植物互作网络的研究较少,对城市蝴蝶蜜源网络结构缺乏深入认识。研究在国内城市生态系统中构建蝴蝶蜜源网络,并探讨不同类型植物对网络特征的影响。2020年6-9月,在北京26个城市公园中记录访花蝴蝶和蜜源植物物种及互作频次,采用交互多样性（ID）、交互均匀性（IE）、专业化程度（H2''）定量化生态网络结构特征,采用Kruskal-Wallis秩和检验和变差分解分析不同生长型、起源、栽培方式的植物类型对网络结构的影响差异。采用物种的伙伴多样性（PD）和专业化程度（d''）识别重要蜜源植物。研究结果表明：（1）北京城市公园中22种蝴蝶与81种开花植物的交互作用,形成趋于泛化的生态网络结构;（2）不同生长型及不同起源的植物-蝴蝶网络的交互多样性及专业化程度有显著差异,草本及乡土植物对丰富网络中交互多样性和支持专业性更高的蝴蝶物种具重要作用,而植物的栽培方式对蜜源网络结构影响较小;（3）伙伴多样性高且专业化程度高的植物可被视为重要蜜源植物。基于蝴蝶多样性保护的目标,在城市生态系统中,绿色空间应注重构建乡土草本植物群落,优先选择重要蜜源植物。我们的发现印证了蝴蝶-蜜源植物生态网络方法作为联结生态研究和城市绿地实践管理的有效工具,能为城市生态系统中生物多样性保护提供科学策略,具有重要意义。     

Interdisciplinary research for the proposal of the Urban Biosphere Reserve of Rome Municipality

Abstract

The issue of urban sustainability is considered within the context of the metropolis of Rome, the capital of Italy. The aim is pursued through an Urban Biosphere Reserve proposal, drawn up by an interdisciplinary group of experts comprising landscape ecologists, geologists, plant ecologists, zoologists, geographers, city planners and environmental psychologists. The potential applicability of this project on an international level is discussed, with particular focus on its importance as (i) one of the first proposals of an Urban Biosphere Reserve encompassing the whole municipality of a large city, (ii) an original approach to urban ecosystem investigations within the framework of landscape ecology principles, and (iii) a good example of cooperation between scientists and local decision-makers to preserve the cultural and landscape identity in an urban and periurban context.     

How to make methodological decisions when inferring social networks

Social network analyses allow studying the processes underlying the associations between individuals and the consequences of those associations. Constructing and analyzing social networks can be challenging, especially when designing new studies as researchers are confronted with decisions about how to collect data and construct networks, and the answers are not always straightforward. The current lack of guidance on building a social network for a new study system might lead researchers to try several different methods and risk generating false results arising from multiple hypotheses testing. Here, we suggest an approach for making decisions when starting social network research in a new study system that avoids the pitfall of multiple hypotheses testing. We argue that best edge definition for a network is a decision that can be made using a priori knowledge about the species and that is independent from the hypotheses that the network will ultimately be used to evaluate. We illustrate this approach with a study conducted on a colonial cooperatively breeding bird, the sociable weaver. We first identified two ways of collecting data using different numbers of feeders and three ways to define associations among birds. We then evaluated which combination of data collection and association definition maximized (a) the assortment of individuals into previously known “breeding groups” (birds that contribute toward the same nest and maintain cohesion when foraging) and (b) socially differentiated relationships (more strong and weak relationships than expected by chance). This evaluation of different methods based on a priori knowledge of the study species can be implemented in a diverse array of study systems and makes the case for using existing, biologically meaningful knowledge about a system to help navigate the myriad of methodological decisions about data collection and network inference.     

Taking a systems approach to ecological systems

Increasingly, there is interest in a systems‐level understanding of ecological problems, which requires the evaluation of more complex, causal hypotheses. In this issue of the Journal of Vegetation Science, Soliveres et al. use structural equation modeling to test a causal network hypothesis about how tree canopies affect understorey communities. Historical analysis suggests structural equation modeling has been under‐utilized in ecology.     

A Household Perspective for Biodiversity Conservation

Abstract: Many researchers have implicated human population density in species endangerment, but these correlative studies do not demonstrate causality. We propose that hypotheses implicating human population density in wildlife endangerment at global and national scales owe their public and academic currency as thoroughly to inductive reasoning and repetition as to scientific experimentation. It follows that alternative research hypotheses generated from the same facts should provide equally tenable results. Household density provides such an alternative hypothesis and is growing faster than human population density. We used linear multiple regression models to demonstrate that household density provides a viable alternative statistical hypothesis to human population density for explaining species endangerment (household model, r² = 0.85; population model, r² = 0.84). We then suggest adopting a household perspective for biodiversity conservation because 1) social norms and practices render a household approach to conservation more pragmatic than a human population perspective and 2) shifting the focus toward households could facilitate movement from a human-versus-nature ethic to a humans-situated-within-nature ethic (e.g., a land ethic). Wildlife managers and researchers concerned about the negative influence humans have on biodiversity should consider grounding research, theory, and policy decisions in the dynamics of human households as an alternative to human population.     

基于图论的景观图表达、分析及应用

景观结构和空间格局一直是景观生态学的核心问题,图论的应用为景观格局的分析提供了一种研究框架,基于图论的景观图逐渐被应用于生物多样性保护的连通性建模和景观规划的决策支持研究,景观图的表达、分析和应用已成为保护生物学和景观生态学研究的热点。本文首先介绍了景观图的图论基础,在Scopus数据库的基础上,检索了1993—2019年在标题、摘要和关键词中出现 “landscape graph”、“connectivity”和“network”词汇的257篇已发表的期刊论文。从年发文量、来源期刊、研究区域、研究机构、景观类型等方面分析了该领域的研究进展和发展趋势。分析发现,2017年之前,发表的期刊论文数量整体呈上升趋势,2017年之后年发文量逐年下降;主要研究力量集中在美国、西班牙、法国、加拿大和中国,发文量占到86.8%。大部分研究成果发表在“Landscape Ecology”、“Landscape and Urban Planning”和“Biological Conservation”期刊上。在研究内容上,景观图表达主要包括点的定义、边的度量和景观的模拟3方面,景观图分析研究包括分析指数、景观图划分两方面。我们重点关注了景观图在生物多样性保护、景观(生态网络)规划和管理、景观影响评价等科学与实践中的应用。基于图论的景观图通过帮助理解景观连通性变化、动物行为和栖息地保护,影响着保护科学和规划实践者。图论对保护科学和规划的影响来自于丰富的理论基础和成熟的研究方法,基于图论的景观图为景观结构和格局的生态学理解提供了跳板,并将继续成为全球研究人员和实践者的重要工具。     

The function of menstrual taboos among the dogon

Menstrual taboos are nearly ubiquitous and assume parallel forms in geographically distant populations, yet their function has baffled researchers for decades. This paper proposes that menstrual taboos are anticuckoldry tactics. By signaling menstruation, they may advertise female reproductive status to husbands, affines, and other observers. Females may therefore have difficulty in obfuscating the timing of the onset of pregnancy. This may have three consequences: (a) males are better able to assess their probabilities of paternity and to direct their parental investment toward genetic offspring; (b) adulterous pregnancies are more easily detected and penalized, enhancing sexual fidelity; and (c) males avoid marrying pregnant females by relying on menstruation as evidence of nonpregnancy. This hypothesis is tested with 29 months of field data on menstrual taboos among the Dogon of Mali. Key results include the following: (a) cuckoldry is a major Dogon concern, (b) menstrual huts advertise female reproductive status, (c) husbands impose the taboos upon their wives, (d) female defiance of the taboos is undetectable and probably rare, and (e) informants think that the taboos help husbands and patrilineages to avoid cuckoldry. Thus the anti-cuckoldry hypothesis provides helpful insight into the menstrual taboos of the Dogon and should be tested among other populations. This research was supported by The Evolution and Human Behavior Program at the University of Michigan (through Dick Alexander), the L.S.B. Leakey Foundation, and the National Science Foundation (BNS-8612291). Beverly Strassmann is a National Institutes of Health postdoctoral fellow at the Reproductive Sciences Program, University of Michigan. Her primary research interest is human evolutionary ecology, with recent emphasis on menstruation in natural fertility populations, the effect of polygyny on female fitness, and reproductive endocrinology.     

Establishing laboratory cultures and performing ecological and evolutionary experiments with the emerging model species Chironomus riparius

Chironomus riparius is a well‐established model organism in various fields such as ecotoxicology and ecology, and therefore, environmental preferences, ecological interactions and metabolic traits are well‐studied. With the recent publication of a high‐quality draft genome, as well as different population genetic parameters such as mutation and recombination rate, the species can be used as an alternative to the Drosophila models in experimental population genomics or molecular ecology. To facilitate access to this promising experimental model species for a wider range of researchers, we describe experimental methods to first create and sustain long‐term cultures of C. riparius and then use them to perform repeatable and comparable experiments for various research questions.     

Three-dimensional visual illusions—two easily constructed models

‘Urban ecology’ has received considerable attention both in the media and at research level in recent years. The rapid evolution of this readily accessible branch of ecology has, in turn, led to some uncertainty about content and emphasis. Problems have thereby been encountered in attempting to delimit this essentially environmental study.

A brief review of the development of ecology in general, and urban ecology in particular, serves to shed some light on the changing scope of the subject.     

The evolution of cooperative breeding in the African cichlid fish,Neolamprologus pulcher

The conundrum of why subordinate individuals assist dominants at the expense of their own direct reproduction has received much theoretical and empirical attention over the last 50 years. During this time, birds and mammals have taken centre stage as model vertebrate systems for exploring why helpers help. However, fish have great potential for enhancing our understanding of the generality and adaptiveness of helping behaviour because of the ease with which they can be experimentally manipulated under controlled laboratory and field conditions. In particular, the freshwater African cichlid, Neolamprologus pulcher, has emerged as a promising model species for investigating the evolution of cooperative breeding, with 64 papers published on this species over the past 27 years. Here we clarify current knowledge pertaining to the costs and benefits of helping in N. pulcher by critically assessing the existing empirical evidence. We then provide a comprehensive examination of the evidence pertaining to four key hypotheses for why helpers might help: (1) kin selection; (2) pay‐to‐stay; (3) signals of prestige; and (4) group augmentation. For each hypothesis, we outline the underlying theory, address the appropriateness of N. pulcher as a model species and describe the key predictions and associated empirical tests. For N. pulcher, we demonstrate that the kin selection and group augmentation hypotheses have received partial support. One of the key predictions of the pay‐to‐stay hypothesis has failed to receive any support despite numerous laboratory and field studies; thus as it stands, the evidence for this hypothesis is weak. There have been no empirical investigations addressing the key predictions of the signals of prestige hypothesis. By outlining the key predictions of the various hypotheses, and highlighting how many of these remain to be tested explicitly, our review can be regarded as a roadmap in which potential paths for future empirical research into the evolution of cooperative breeding are proposed. Overall, we clarify what is currently known about cooperative breeding in N. pulcher, address discrepancies among studies, caution against incorrect inferences that have been drawn over the years and suggest promising avenues for future research in fishes and other taxonomic groups.     

基于三维景观指数的城市景观美学特征定量表达——以深圳市为例

城市景观由自然元素与人工元素构成,以建筑为主体,辅以外部空间环境。对城市景观美学价值的研究有利于探讨如何提升城市形象及居民生活环境,为城市规划设计纳入了感性与理性结合的合理途径。景观美学特征以不同方式影响整体景观质量,合理运用景观指数对城市景观美学特征进行量化表达,是评估景观质量的重要前提。在整理借鉴景观美学相关研究的基础上,结合景观生态学理论基础,以城市空间内部审美者的角度将城市景观五大美学特征,包括自然性、开阔性、多样性、奇特性和协调性,转化为可定量表达的二维及三维景观指数。量化指标易使用数据进行快速评估,对于城市规划设计有着积极意义。     

Mapping urban ecology education in the UK

Abstract

Urban ecology has matured as a field of investigation. This paper explores how well it has transitioned into the educational curricula of UK Higher Education Institutions (HEIs) by mapping the presence of urban ecological or environmental topics across undergraduate and postgraduate programmes. The prevalence of different topics, the level at which they are taught, and the disciplinary areas in which they are housed, are quantified. Urban ecological topics are found in programmes across 50 of 147 HEIs (34%), mainly taught in ancillary fashion to support wider subjects, though some specialist modules and even programmes do exist. Only one HEI incorporates a compulsory (core) dedicated urban ecology module at undergraduate level. Much urban ecology teaching takes place at advanced undergraduate and postgraduate levels. Applied topics are usually taught from an environmental science perspective, with common examples including urban hydrology, climate, and green infrastructure; probably to address global concerns about urban sustainability and resilience. In particular there is scope for greater incorporation of urban ecology topics and themes into biological and ecological programmes, and utilising cities as labs to explore these topics. The paper concludes with a discussion of some of these possibilities.     

Ecology and urban planning

Urban areas harbour diverse nature ranging from semi-natural habitats to wastelands, parks and other highly human-influenced biotopes with their associated species assemblages. Maintenance of this urban biodiversity for the residents and for its intrinsic value in the face of increasing population and expanding cities requires that ecological knowledge should be better integrated into urban planning. To achieve this goal understanding of ecological patterns and processes in urban ecosystems is needed. The first step in the necessary urban ecological research is to find out what kind of nature exists in cities. Second, knowledge about ecological processes important in urban nature is required. Although ecological processes in cities are the same as in rural areas, some of them, such as invasion by alien species, are more prevalent in urban than in rural conditions. Third, based on ecological knowledge, management schemes maintaining the diversity of urban nature should be designed. These procedures should also include protection of urban nature, e.g. in urban national parks. Finally, as ecology alone cannot provide the complex information about human influence on urban ecosystems, interdisciplinary research involving natural and social sciences is imperative for a holistic approach to integrating ecology into the process of urban planning.     

Quorum sensing inhibition in Pseudomonas aeruginosa biofilms: new insights through network mining

Quorum sensing plays a pivotal role in Pseudomonas aeruginosa’s virulence. This paper reviews experimental results on antimicrobial strategies based on quorum sensing inhibition and discusses current targets in the regulatory network that determines P. aeruginosa biofilm formation and virulence. A bioinformatics framework combining literature mining with information from biomedical ontologies and curated databases was used to create a knowledge network of potential anti-quorum sensing agents for P. aeruginosa. A total of 110 scientific articles, corresponding to 1,004 annotations, were so far included in the network and are analysed in this work. Information on the most studied agents, QS targets and methods is detailed. This knowledge network offers a unique view of existing strategies for quorum sensing inhibition and their main regulatory targets and may be used to readily access otherwise scattered information and to help generate new testable hypotheses. This knowledge network is publicly available at http://pcquorum.org/.     

Genomic evidence for parallel adaptation to cities

Urban evolutionary biology is the study of rapid evolutionary change in response to humans and our uses of land to support city dwellers. Because cities are relatively modern additions to the natural world, research on urban evolution tends to focus on microevolutionary change that has happened across a few to many hundreds of generations. These questions still fall under the broad purview of evolutionary ecology. However, the severity, rapidity and replication of environmental changes that drive evolution in this context make it worthy of specific attention. Urban evolution provides the opportunity to study the earliest stages of evolution in a context that is scientifically interesting and societally important. The newness of urban populations and their proximity to natural populations also creates challenges when trying to detect population genetic change. In a From the Cover article in this issue of Molecular Ecology, Mueller et al. use whole genome resequencing data to address some of these challenges while exploring genetic changes associated with urbanization in three replicate urban‐rural burrowing owl (Athene cunicularia) populations. Combining multiple approaches across these sample sites Mueller et al. find evidence for selection on genes whose function is related to synapses, neuron projections, brain connectivity and cognitive function in general. That selection was parallel suggests that phenotypes related to brain processes were probably particularly important for urban adaptation.     

Evaluation Approaches for Advancing Urban Water Goals

Urban areas (especially cities) are challenged in meeting their direct water needs from local sources. They also exert strain on global water resources through their indirect (virtual) water use. Agencies concerned with urban water management have visions and goals for managing direct water use, but indirect use is only inferred in more global visions for sustainable consumption. There is limited quantification of “urban water performance” at the macro urban scale (whole of city) to monitor progress toward these goals. It is constrained by a lack of clarity about the evaluation approaches that best serve them. We ask, How can the evaluation approaches described in literature advance urban water management goals? We reviewed the utility of eight evaluation approaches, including urban water system modeling, urban metabolism (territorial and mass balance), consumption (life cycle assessment, water footprinting, and input‐output analysis), and complex systems (ecological network analysis and systems dynamics) approaches. We found that urban metabolism based on water mass balance is a core method for generating information to inform current goals for direct urban water use, with potential for being “coupled” with the other approaches. Consumption approaches inform the management of indirect water use. We describe this in a framework for urban water evaluation to give greater clarity to this field and flag the further research that would be needed to progress this. It includes the recommendation to differentiate the evaluation of direct and indirect urban water, but to also interpret them together.     

What do we know about armadillos? An analysis of four centuries of knowledge about a group of South American mammals,with emphasis on their conservation

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