Parallel changes in the taxonomical structure of bacterial communities exposed to a similar environmental disturbance

Bacterial communities play a central role in ecosystems, by regulating biogeochemical fluxes. Therefore, understanding how multiple functional interactions between species face environmental perturbations is a major concern in conservation biology. Because bacteria can use several strategies, including horizontal gene transfers (HGT), to cope with rapidly changing environmental conditions, potential decoupling between function and taxonomy makes the use of a given species as a general bioindicator problematic. The present work is a first step to characterize the impact of a recent polymetallic gradient over the taxonomical networks of five lacustrine bacterial communities. Given that evolutionary convergence represents one of the best illustration of natural selection, we focused on a system composed of two pairs of impacted and clean lakes in order to test whether similar perturbation exerts a comparable impact on the taxonomical networks of independent bacterial communities. First, we showed that similar environmental stress drove parallel structural changes at the taxonomic level on two independent bacterial communities. Second, we showed that a long-term exposure to contaminant gradients drove significant taxonomic structure changes within three interconnected bacterial communities. Thus, this model lake system is relevant to characterize the strategies, namely acclimation and/or adaptation, of bacterial communities facing environmental perturbations, such as metal contamination.     

转型期城市生态学前沿研究进展

城市是一类以人类活动为中心听社会－经济－自然复合生态系统。城市人类活动对局地、区域和全球环境的胁迫效应,自然生态系统的响应机制,城市时、空、量、构、序的耦合规律、动力学机制和控制论方法是当前国际社会和学术界关注的热点。介绍了转型期城市人类生态影响研究的一些主要国际科学计划,如ＳＣＯＰＥ及ＩＨＤＰ等,综述了城市生态学研究三大前沿领域的国际研究动向和案例,即人居生态学、产业生态学和城镇生命支持系统生态     

The Philosophical Dullness of Classical Ecology, and a Levinsian Alternative

Ecology has had a lower profile in Biology & Philosophy than one might expect on the basis of the attention ecology is given in public discussions in relation to environmental issues. Our tentative explanation is that ecology appears theoretically redundant within biology and, consequently, philosophically challenging problemsrelated to biology are commonly supposed to be somewhere else, particularly in the molecular sphere. Richard Levins has recognized the genuine challenges posed by ecology for theoretical and philosophical thinking in biology. This essay sets the stage for appreciating his work; it was preceded by four articles published in Biology & Philosophy 15(2),and is followed by a personal reminiscent.     

Towards a Molecular Taxonomy for Protists: Benefits,Risks, and Applications in Plankton Ecology

The increasing use of genetic information for the development of methods to study the diversity, distributions, and activities of protists in nature has spawned a new generation of powerful tools. For ecologists, one lure of these approaches lies in the potential for DNA sequences to provide the only immediately obvious means of normalizing the diverse criteria that presently exist for identifying and counting protists. A single, molecular taxonomy would allow studies of diversity across a broad range of species, as well as the detection and quantification of particular species of interest within complex, natural assemblages; goals that are not feasible using traditional methods. However, these advantages are not without their potential pitfalls and problems. Conflicts involving the species concept, disagreements over the true (physiological/ecological) meaning of genetic diversity, and a perceived threat by some that sequence information will displace knowledge regarding the morphologies, functions and physiologies of protistan taxa, have created debate and doubt regarding the efficacy and appropriateness of some genetic approaches. These concerns need continued discussion and eventual resolution as we move toward the irresistible attraction, and potentially enormous benefits, of the application of genetic approaches to protistan ecology.     

流域生态学——生态学研究的一个新领域

由于人类不合理开发和利用自然资源,造成了流域生态环境的重大破坏,为了合理开放流域资源和保护生态环境,非常有必要开展流域生态学的研究。文中系统阐述了流域生态学的重要意义、主要研究内容和方法。流域生态学属于宏观生态学的研究领域,主要借助于宏观生态学的研究方法。流域生态学与目前生态学最关注的“全球变化、生物多样性和可持续发展”3个研究问题紧密结合在一起,极具研究价值,建议开展广泛深入的研究。     

Distribution patterns of Batrachium communities in Mediterranean hard waters

The greatest number of Batrachium plant-communities is reached in base-poor waters of SW Europe where most Batrachium species develop laminar leaves. In contrast, base-rich waters of the Western Mediterranean are characterized by few Batrachium communities and by the only one Batrachium species present in the area with only dissected leaves. This work focused initially on studying the water ecology of Iberian Batrachium communities' developing in hard waters in order to seek to what extend the water physical–chemical gradient determines the occurrence of heterophyllous or homophyllous-dissected species. Floristic data and water physical–chemical data were analyzed using multivariate and comparative methods. We found two main types of Batrachium communities: community of Ranunculus trichophyllus – homophyllous and dissected species–, and community of Ranunculus penicillatus – heterophyllous species–. Alkalinity degree is the main factor separating both communities. Our results of a tentative survey on Batrachium composition in hard waters in the Eastern Mediterranean showed a wider range of physical–chemical water features as well as a greater number of Batrachium species with only dissected leaves in comparison to Western Mediterranean. We conclude that high alkalinity is related to the occurrence of Batrachium communities characterized by species with only dissected leaves in both the western and eastern parts of Mediterranean Europe.     

Unifying functional trait approaches to understand the assemblage of ecological communities: synthesizing taxonomic divides

Functional traits have long been considered the ‘holy grail’ in community ecology due to their potential to link phenotypic variation with ecological processes. Advancements across taxonomic disciplines continue to support functional ecology's objective to approach generality in community assembly. However, a divergence of definitions, aims and methods across taxa has created discord, limiting the field's predictive capacity. Here, we provide a guide to support functional ecological comparisons across taxa. We describe advances in cross‐taxa functional research, identify gaps in approaches, synthesize definitions and unify methodological considerations. When deciding which traits to compare, particularly response traits, we advocate selecting functionally analogous traits that relate to community assembly processes. Finally, we describe at what scale and for which questions functional comparisons across taxa are useful and when other approaches may be more constructive. Our approach promotes standardized methods for integrative research across taxa to identify broad trends in community assembly.     

Diet of Alouatta belzebul discolor in an Amazonian Rain Forest of Northern Mato Grosso State, Brazil

Prior field studies of Alouatta showed the highest frugivory in A. belzebul. During 10 mo between October 1999 and October 2000, we studied the feeding ecology of a group of 7–9 red-handed howlers (Alouatta belzebul discolor) in a primary forest on the banks of a tributary of the Teles Pires River, near Paranaíta, MT, Brazil (9°34S; 56°19W). The howlers used 3 types of habitat: upland (terra firme) forest, flood plain forest (igapó) and palm forest (açaizal). During 45 complete days of observation, the group fed on 67 plant species (N = 2039 feeding records) in 24 families. The 2 most used families were Leguminosae and Moraceae, with 17 species each. Fruits predominated (40–80%) in every month, except June, when young leaves accounted for 54% of the diet. Dialium guianense (Leguminosal, Caesalpinioideae) was the most consumed species. Flower (6%) and mature leaf (5%) consumptions were low. Tree bark, live and decayed wood, and woody twig monthly consumption varied from 0 to 26%, and occurred only in igapó, where they used mostly Macrolobium acaciaefolium (Leguminosae, Caesalpinioideae), Clitoria amazonum (Leguminosae, Papilionoideae) and Licania cf. canescens (Chrysobalanaceae). Our study on Alouatta belzebul discolor complements the high frugivory in A. b. belzebul and documents uncommon dietary items for the species. Although there is intraspecific variation in howler diets and new studies have shown higher frugivory for more folivorous species, Alouatta belzebul seems to be the most frugivorous howler species, in spite of its wide geographical distribution and, in this case, sympatry with Ateles chamek, a frugivore.     

Australia's place in the global restoration challenge: Interview with Richard Hobbs

Summary   This interview with Professor Richard Hobbs, a prominent Australian researcher, professor and journal editor, traces his involvement in ecology and the relatively new disciplines of landscape ecology and restoration ecology. Born and educated as a plant ecologist in Scotland, Richard undertook postdoctoral research in the USA before taking up a series of research positions in Australia that steered him towards landscape ecology and restoration ecology. Having maintained an interest and involvement in international organizations, Richard provides comment in this interview on the progress of ecological restoration practice in Australasia compared to North America and comments on the need for ensuring research in these disciplines is strongly linked to management, is as broadly relevant as possible, and, is carried out at appropriate scales.     

Rewilding the Scottish Highlands: Do Wild Boar,Sus scrofa,Use a Suitable Foraging Strategy to be Effective Ecosystem Engineers?

Ecosystem engineers are increasingly being reintroduced to restore ecological processes in restoration and rewilding projects. To predict and adaptively manage the impact of such species their behavioral ecology must be understood and quantified. Rooting behavior by wild boar qualifies them as ecosystem engineers due to their impact on vegetation disturbance regimes. The behavioral foraging ecology of wild boar was quantified in a fenced area in the Scottish Highlands in order to provide some of the understanding necessary to predict their ability to affect ecosystem restoration. Five wild boar were monitored within a 125 ha fenced area using Global Positioning System (GPS) collars and behavioral monitoring over a 12‐month period. Their activity budget, the relationship between foraging behavior and vegetation communities, and how these relationships vary between seasons was investigated. The results indicate that wild boar invested approximately four more hours daily to rooting during the autumn and winter than the spring and summer. During the spring and summer, grazing was the dominant foraging behavior (approximately 28% of foraging period) while rooting dominated in autumn and winter (approximately 76% of foraging period). Deep rooting behavior is particularly associated with bracken‐dominated communities. Associations between rooting, vegetation community, and season will have a strong influence on the spatial and temporal distribution of rooting behavior. This variation could have important implications for the impacts of boar on vegetation community dynamics. These results detail some of wild boar's ecosystem engineering behaviors; however, further research is required to consider the wider impacts of a full reintroduction.     

红壤生态学

红壤是一种重要类型的土壤,面积大、分布广,条件优越,开发利用潜力巨大。当前,红壤退化严重、生态环境问题突出,亟待研究治理。建立红壤生态学,将红壤生态学的理论与技术运用到红壤的生态治理、环境改善及其合理开发利用中,既是现实需要又是形势所迫,势在必行。红壤生态学是由土壤学与生态学交叉、复合而形成的一门新兴、边缘农业应用科学,是土壤生态学的一个分支学科。红壤生态学以红壤为研究对象,探索红壤生态系统中生物与生物、生物与环境、环境因子与环境因子之间的相互关系及其作用机理,深入揭示红壤生态系统的结构、功能、演变规律及调控措施,最终目标是要实现红壤资源的可持续利用和红壤生态系统的可持续发展。红壤生态学着重研究以下7个方面的内容:(1)红壤生态系统的结构;(2)红壤生态系统的功能;(3)红壤生态系统的演变;(4)红壤生态系统的退化;(5)红壤生态系统的平衡;(6)红壤生态系统的调控;(7)红壤资源的开发利用。红壤生态学具有以下几个明显的特征:交叉性与边缘性、复合性与综合性、实践性与应用性、理论性与学术性、多样性与复杂性、层次性与系统性,以及长期性与战略性。今后,红壤生态学将向着规范化、数字化、高效化、国际化方向发展。为促进红壤生态学的又好又快发展,应采取以下战略对策:一是培养专门人才;二是增加物质投入;三是建设研发平台;四是加强交流合作;五是勇于开拓创新。     

The traits of “trait ecologists”: An analysis of the use of trait and functional trait terminology

Trait and functional trait approaches have revolutionized ecology improving our understanding of community assembly, species coexistence, and biodiversity loss. Focusing on traits promotes comparability across spatial and organizational scales, but terms must be used consistently. While several papers have offered definitions, it remains unclear how ecologists operationalize “trait” and “functional trait” terms. Here, we evaluate how researchers and the published literatures use these terms and explore differences among subdisciplines and study systems (taxa and biome). By conducting both a survey and a literature review, we test the hypothesis that ecologists’ working definition of “trait” is adapted or altered when confronting the realities of collecting, analyzing and presenting data. From 486 survey responses and 712 reviewed papers, we identified inconsistencies in the understanding and use of terminology among researchers, but also limited inclusion of definitions within the published literature. Discrepancies were not explained by subdiscipline, system of study, or respondent characteristics, suggesting there could be an inconsistent understanding even among those working in related topics. Consistencies among survey responses included the use of morphological, phonological, and physiological traits. Previous studies have called for unification of terminology; yet, our study shows that proposed definitions are not consistently used or accepted. Sources of disagreement include trait heritability, defining and interpreting function, and dealing with organisms in which individuals are not clearly recognizable. We discuss and offer guidelines for overcoming these disagreements. The diversity of life on Earth means traits can represent different features that can be measured and reported in different ways, and thus, narrow definitions that work for one system will fail in others. We recommend ecologists embrace the breadth of biodiversity using a simplified definition of “trait” more consistent with its common use. Trait‐based approaches will be most powerful if we accept that traits are at least as diverse as trait ecologists.     

Blood parasites of blue grouse: variation in prevalence and patterns of interspecific association

Blood parasites of blue grouse (Dendragapus obscurus) were sampled and the factors responsible for variation in prevalence of blood parasites, and patterns of association among parasite species, were investigated. Five genera of haematozoa were surveyed including four protozoans (Haemoproteus, Leucocytozoon, Plasmodium, and Trypanosoma) and a nematode (Splendidofilaria). Prevalence of blood parasites varied significantly between years; sexes differed in number of parasite species in one of two years. Both positive and negative overall associations among all parasites were found when variance-ratio tests were used indicating that blood parasites often were not independent of one another. In general, Leucocytozoon and Trypanosoma often co-occurred; the strongest associations between these two parasites appeared in samples of hosts most heavily infected by other parasites. Negative associations between parasite species always involved Haemoproteus. Associations between pairs of species did not account wholly for overall patterns of associations within the parasite assemblage. Studies of associations within blood parasite assemblages are important for understanding the ecology of haemotropic infections and for clucidating the need for multi-parasite models of parasite-host interactions.     

Aspects of the shore and sublittoral ecology of the Daucleddau estuary (Milford Haven)

The upper reaches of Milford Haven and the Daucleddau have an unusually rich fauna because of their depth and the abundance of hard substrata. The estuary is of commercial importance both in its potential for shell-fisheries and its development as a major oil port, bringing risks of serious pollution. Recent extensive sublittoral studies have added numerous faunistic records and have also cast further light upon changes in the zonation of sedentary marine animals as they penetrate brackish regions. Re-survey of a transit across the channel near Lawrenny has shown changes largely related to the spread of a vigorous immigrant competitor of the native oyster.     

空间分子生态学——分子生态学与空间生态学相结合的新领域

分子标记、基因流、种群空间动态是当前生命科学研究中的热点领域。RFLPs、RAPDs、微卫星等新的分子标记的不断涌现,促进了这些领域的飞速发展。对种群空间动态研究中的等级岛屿模型、距离隔离模型、脚踏石模型、集合种群模型等方面许多令人瞩目的进展做了介绍。同时还介绍了遗传距离、基因流及其测度、基因突变模型、3S技术、空间精确性种群模型和基因频率的空间自相关等热点领域。最后,就空间分子生态学存在的问题与前景进行了讨论,指出了空间分子生态学可能的发展方向。     

A comparison of vascular vegetation and protozoan communities in some freshwater wetlands of Northern Lower Michigan

Vascular vegetation and protozoan communities were sampled in seven wetland sites — two bogs, two fens, two marshes, and one swamp — in summer 1977. Two similarity indices were used to compare vascular vegetation and Protozoa from each site with all the other sites. Bog sites were the most distinct from other wetland types with respect to chemical and physical characteristics, dominant vascular vegetation, and protozoan species composition. The swamp site had the highest similarity to all other sites with respect to both dominant vascular vegetation and protozoan species. Protozoan communities from different wetland types were much more similar than dominant vascular species; however, the pattern of similarity between wetland sites was very similar for both groups (Pearson product-moment correlation coefficient = 0.76).Protozoan communities were also compared with those from several nearby lakes with respect to colonization rate onto polyurethane foam artificial substrates. The structure and dynamics of protozoan communities of wetlands were broadly different from those of other freshwaters, and somewhat unique to the other wetland types. Evidence for a high degree of eutrophy in certain bog lakes is presented.     

The growing contributions of molecular biology and immunology to protistan ecology: molecular signatures as ecological tools

Modern genetic and immunological techniques have become important tools for assessing protistan species diversity for both the identification and quantification of specific taxa in natural microbial communities. Although these methods are still gaining use among ecologists, the new approaches have already had a significant impact on our understanding of protistan diversity and biogeography. For example, genetic studies of environmental samples have uncovered many protistan phylotypes that do not match the DNA sequences of any cultured organisms, and whose morphological identities are unknown at the present time. Additionally, rapid and sensitive methods for detecting and enumerating taxa of special importance (e.g. bloom-forming algae, parasitic protists) have enabled much more detailed distributional and experimental studies than have been possible using traditional methods. Nevertheless, while the application of molecular approaches has advanced some aspects of aquatic protistan ecology, significant issues still thwart the widespread adoption of these approaches. These issues include the highly technical nature of some of the molecular methods, the reconciliation of morphology-based and sequence-based species identifications, and the species concept itself.     

分子微生物生态学及其研究进展

分子微生物生态学是分子生物学实验技术应用于微生物生态学研究领域而发展形成的一门交叉学科,在研究微生物生态系统组成结构、功能的分子机理以及微生物与生物和非生物环境之间相互关系等方面显示了巨大的潜力．十几年来分子微生物生态学研究所取得的成就证明：分子生物学研究技术向微生物生态学领域的不断渗透,为微生物生态学研究领域注入了新的活力,尤其在微生物多样性、微生物区系分子组成及变化规律以及微生物系统进化研究方面取得了重大突破．本文根据近年分子微生物生态学的研究进展,就分子微生物生态学概念的提出、发展历程、主要研究领域、主要研究方法以及未来研究热点领域作以简要综述。