Functional rarity of plants in German hay meadows — Patterns on the species level and mismatches with community species richness

Functional rarity (FR) — a feature combining a species'' rarity with the distinctiveness of its traits — is a promising tool to better understand the ecological importance of rare species and consequently to protect functional diversity more efficiently. However, we lack a systematic understanding of FR on both the species level (which species are functionally rare and why) and the community level (how is FR associated with biodiversity and environmental conditions). Here, we quantify FR for 218 plant species from German hay meadows on a local, regional, and national scale by combining data from 6500 vegetation relevés and 15 ecologically relevant traits. We investigate the association between rarity and trait distinctiveness on different spatial scales via correlation measures and show which traits lead to low or high trait distinctiveness via distance‐based redundancy analysis. We test how species richness and FR are correlated, and use boosted regression trees to determine environmental conditions that are driving species richness and FR. On the local scale, only rare species showed high trait distinctiveness while on larger spatial scales rare and common species showed high trait distinctiveness. As infrequent trait attributes (e.g., legumes, low clonality) led to higher trait distinctiveness, we argue that functionally rare species are either specialists or transients. While specialists occupy a particular niche in hay meadows leading to lower rarity on larger spatial scales, transients display distinct but maladaptive traits resulting in high rarity across all spatial scales. More functionally rare species than expected by chance occurred in species‐poor communities indicating that they prefer environmental conditions differing from characteristic conditions of species‐rich hay meadows. Finally, we argue that functionally rare species are not necessarily relevant for nature conservation because many were transients from surrounding habitats. However, FR can facilitate our understanding of why species are rare in a habitat and under which conditions these species occur.     

Both rare and common species make unique contributions to functional diversity in an ecosystem unaffected by human activities

Aim

Rare species typically contribute more to functional diversity than common species. However, humans have altered the occupancy and abundance patterns of many species—the basis upon which we define “rarity.” Here, we use a globally unique dataset from hydrothermal vents—an untouched ecosystem—to test whether rare species over‐contribute to functional diversity.

Location

Juan de Fuca Ridge hydrothermal vent fields, Northeast Pacific Ocean.

Methods

We first conduct a comprehensive review to set up expectations for the relative contributions of rare and common species to functional diversity. We then quantify the rarity and commonness of 37 vent species with relevant trait information to assess the relationship between rarity and functional distinctiveness—a measure of the uniqueness of the traits of a species relative to traits of coexisting species. Next, we randomly assemble communities to test whether rare species over‐contribute to functional diversity in artificial assemblages ranging in species richness. Then, we test whether biotic interactions influence functional diversity contributions by comparing the observed contribution of each species to a null expectation. Finally, we identify traits driving functional distinctiveness using a distance‐based redundancy analysis.

Results

Across functional diversity metrics and species richness levels, we find that both rare and common species can contribute functional uniqueness. Some species always offer unique trait combinations, and these species host bacterial symbionts and provide habitat complexity. Moreover, we find that contributions of species to functional diversity may be influenced by biotic interactions.

Main conclusions

Our findings show that many common species make persistent, unique contributions to functional diversity. Thus, it is key to consider whether the abundance and occupancy of species have been reduced, relative to historical baselines, when interpreting the contributions of rare species to functional diversity. Our work highlights the importance of testing ecological theory in ecosystems unaffected by human activities for the conservation of biodiversity.     

Going with the flow? Threatened species management and legislation in the face of climate change

Summary   The potential impacts of climate change on threatened species, populations and communities are considered. It is suggested that minor changes to legislation will be required to address the consequences of movement of threatened species but that threatened species legislation will remain relevant as an important tool for prioritizing conservation actions. The importance of taking proactive steps now to permit future movement of species and communities across fragmented landscapes is emphasized.     

Threatened fishes in Australia–an overview

Considering the size of the continent, the Australian freshwater fish fauna is a relatively depauperate one, comprising only about 192 species (belonging to 34 families) which spend significant portions of their life cycles in freshwater habitats. Of these freshwater species, the latest (1989) analysis indicates that six can be classified as endangered, five as vulnerable, four as potentially threatened, two as indeterminate, 32 as restricted, and 16+ as of unknown status, totalling 65 + species. Thus approximately 34% of the entire Australian freshwater fish fauna falls within the above six conservation status categories, which were established by the Australian Society for Fish Biology in 1985. Conservation problems of these fishes, and particularly man-made changes to their habitats, are discussed, and some possible management solutions outlined. Brief mention is also made of several marine species which may also fall into one or more of the above conservation categories, although not enough information is yet available to classify them accurately.     

Multiple drivers of decline in the global status of freshwater crayfish (Decapoda: Astacidea)

Rates of biodiversity loss are higher in freshwater ecosystems than in most terrestrial or marine ecosystems, making freshwater conservation a priority. However, prioritization methods are impeded by insufficient knowledge on the distribution and conservation status of freshwater taxa, particularly invertebrates. We evaluated the extinction risk of the world''s 590 freshwater crayfish species using the IUCN Categories and Criteria and found 32% of all species are threatened with extinction. The level of extinction risk differed between families, with proportionally more threatened species in the Parastacidae and Astacidae than in the Cambaridae. Four described species were Extinct and 21% were assessed as Data Deficient. There was geographical variation in the dominant threats affecting the main centres of crayfish diversity. The majority of threatened US and Mexican species face threats associated with urban development, pollution, damming and water management. Conversely, the majority of Australian threatened species are affected by climate change, harvesting, agriculture and invasive species. Only a small proportion of crayfish are found within the boundaries of protected areas, suggesting that alternative means of long-term protection will be required. Our study highlights many of the significant challenges yet to come for freshwater biodiversity unless conservation planning shifts from a reactive to proactive approach.     

Past and present fish species recorded in the estuarine Lake Ichkeul,northern Tunisia

Lake Ichkeul in northern Tunisia is a Ramsar site, a MAB Biosphere Reserve and a UNESCO World Heritage Site. The system is one of the most important coastal wetlands in North Africa, especially as an over-wintering area for migratory birds, particularly Palaearctic waterfowl. The present study was aimed at diagnosing the status of fish species in Lake Ichkeul and documenting their annual and seasonal occurrence within the system. Fish samples were collected monthly at 22 sites from March 2011 to April 2012 using a variety of gears, including a dragnet, gillnet, trammelnet, frynet and beach-seine. Temperature and salinity measurements were taken at each site, while fishes were obtained from only 11 sites, representing mainly lacustrine stations. A total of 18 fish species belonging to 14 genera and 12 families were identified, with Mugilidae dominating with four species, followed by Syngnathidae with three species. This study represents a relative recovery in terms of fish species richness, since only 13 species were recorded here between 2003 and 2007. However, the numbers of fish caught, especially of the commercial taxa, seem to have declined in recent years, and the number of species currently present is much lower than that of several decades ago. Increasing human pressures, particularly reductions in catchment freshwater inputs, a breakdown in ecosystem connectivity, pollution and over-fishing appear to be the principal causes for the decline in fish abundance and diversity.     

Threatened species in a vanishing habitat: plants and invertebrates in calcareous grasslands in the Swiss Jura mountains

We examined the diversity of vascular plants, butterflies, grasshoppers, gastropods and carabid beetles in three calcareous grasslands in the northwestern Swiss Jura mountains, a habitat type that has decreased dramatically during the recent decades. As many as 58 species (ca 22%) of the 266 collected are listed as threatened in northern Switzerland. The number of threatened species ranged from 27 to 49 per site, and 26 species occurred in only one of the three grasslands. The species richness of butterflies and vascular plants correlated positively among the grasslands, while the species richness of other groups did not covary. An index of complementarity indicated that the species compositions (including non-threatened species, and spiders and oribatid mites) of the groups varied greatly among the grasslands. In addition, herbivorous groups were more widely distributed than predators among the three grasslands. Due to this variation in species composition none of the three sites c an substitute for the others, if the biodiversity of these grasslands is to be maintained. Furthermore, the taxonomic groups studied are poor indicators of each others' diversity. Consequently, we support the shopping basket approach to conservation evaluation, i.e. measuring species richness, species composition and complementarity of several groups instead of just one.     

Long-term changes in temperate marine fish assemblages are driven by a small subset of species

The species composition of plant and animal assemblages across the globe has changed substantially over the past century. How do the dynamics of individual species cause this change? We classified species into seven unique categories of temporal dynamics based on the ordered sequence of presences and absences that each species contributes to an assemblage time series. We applied this framework to 14,434 species trajectories comprising 280 assemblages of temperate marine fishes surveyed annually for 20 or more years. Although 90% of the assemblages diverged in species composition from the baseline year, this compositional change was largely driven by only 8% of the species' trajectories. Quantifying the reorganization of assemblages based on species shared temporal dynamics should facilitate the task of monitoring and restoring biodiversity. We suggest ways in which our framework could provide informative measures of compositional change, as well as leverage future research on pattern and process in ecological systems.     

Microsatellite markers discriminate three species of North Atlantic wolffishes (Anarhichas spp.)

Sixteen tetranucleotide and dinucleotide microsatellite markers were isolated from Atlantic wolffish, Anarhichas lupus , following a microsatellite enrichment procedure using probe-labelled magnetic beads. These microsatellites were intended for use in Atlantic wolffish as well as in two closely related species, spotted wolffish, Anarhichas minor , and northern wolffish, Anarhichas denticulatus . As all three species are of conservation concern in Canadian waters and as forensic wildlife cases may arise for this genus, microsatellite markers were assessed to determine how well they differentiate these species from one another and to estimate probability values that could be expected for identification of individuals to species.     

Links to rare climates do not translate into distinct traits for island endemics

Current models of island biogeography treat endemic and non-endemic species as if they were functionally equivalent, focussing primarily on species richness. Thus, the functional composition of island biotas in relation to island biogeographical variables remains largely unknown. Using plant trait data (plant height, leaf area and flower length) for 895 native species in the Canary Islands, we related functional trait distinctiveness and climate rarity for endemic and non-endemic species and island ages. Endemics showed a link to climatically rare conditions that is consistent with island geological change through time. However, functional trait distinctiveness did not differ between endemics and non-endemics and remained constant with island age. Thus, there is no obvious link between trait distinctiveness and occupancy of rare climates, at least for the traits measured here, suggesting that treating endemic and non-endemic species as functionally equivalent in island biogeography is not fundamentally wrong.     

Trypauchen vagina (Bloch & Schneider, 1801) a new established species in the Southwestern Atlantic

Trypauchen vagina (Bloch & Schneider, 1801) is a goby that lives burrowed into the substrata feeding on small invertebrates. It is native to the Indo-pacific region, ranging from Kuwait to China. Recently, this fish has been reported outside the original range of distribution, being found in the Mediterranean Sea, and more recently in the northeastern Brazilian coast. The Mediterranean reports are usually associated with Lessepsian migration, while the reports from Brazil are possibly related to ballast water transportation. In the present work, we provide eight new records from southeastern Brazilian coast, all made in São Paulo state, far from the first record. These additional records raised concern since the presence of an alien species could implicate in environmental and economic losses. Thus, we decide to model the environmental suitability for this goby in the Brazilian coast, specially focusing on major ports, usually places with high ballast water propagule pressure. In addition, an analysis of the suitability in the Red Sea was also made, to verify the hypothesis of Lessepsian migration. The results revealed that temperature and primary productivity are among the most important parameters for the presence of T. vagina, also indicating a high environmental suitability for this species in the Red Sea and Brazilian coast, especially in southeastern region, where the new records were made. Due to the number of collected individuals, it is hard to affirm that this taxon presents a self-sustaining population in Brazilian waters, but the several registers, in different locations and different life stages point to an establishment of the species in this new region. This population status allied with a high environmental suitability is alarming and should motivate new studies concerning T. vagina in Brazilian waters.     

Integrating bioclimate with population models to improve forecasts of species extinctions under climate change

Climate change is already affecting species worldwide, yet existing methods of risk assessment have not considered interactions between demography and climate and their simultaneous effect on habitat distribution and population viability. To address this issue, an international workshop was held at the University of Adelaide in Australia, 25–29 May 2009, bringing leading species distribution and population modellers together with plant ecologists. Building on two previous workshops in the UK and Spain, the participants aimed to develop methodological standards and case studies for integrating bioclimatic and metapopulation models, to provide more realistic forecasts of population change, habitat fragmentation and extinction risk under climate change. The discussions and case studies focused on several challenges, including spatial and temporal scale contingencies, choice of predictive climate, land use, soil type and topographic variables, procedures for ensemble forecasting of both global climate and bioclimate models and developing demographic structures that are realistic and species-specific and yet allow generalizations of traits that make species vulnerable to climate change. The goal is to provide general guidelines for assessing the Red-List status of large numbers of species potentially at risk, owing to the interactions of climate change with other threats such as habitat destruction, overexploitation and invasive species.