How much carbon input is required to preserve or increase projected soil organic carbon stocks in German croplands under climate change?

Plant and Soil - Increasing soil organic carbon (SOC) stocks is discussed as negative emission technology with the potential to remove relevant amounts of carbon from the atmosphere. At the same...     

Initial soil organic carbon stocks govern changes in soil carbon: Reality or artifact?

Changes in soil organic carbon (SOC) storage have the potential to affect global climate; hence identifying environments with a high capacity to gain or lose SOC is of broad interest. Many cross-site studies have found that SOC-poor soils tend to gain or retain carbon more readily than SOC-rich soils. While this pattern may partly reflect reality, here we argue that it can also be created by a pair of statistical artifacts. First, soils that appear SOC-poor purely due to random variation will tend to yield more moderate SOC estimates upon resampling and hence will appear to accrue or retain more SOC than SOC-rich soils. This phenomenon is an example of regression to the mean. Second, normalized metrics of SOC change—such as relative rates and response ratios—will by definition show larger changes in SOC at lower initial SOC levels, even when the absolute change in SOC does not depend on initial SOC. These two artifacts create an exaggerated impression that initial SOC stocks are a major control on SOC dynamics. To address this problem, we recommend applying statistical corrections to eliminate the effect of regression to the mean, and avoiding normalized metrics when testing relationships between SOC change and initial SOC. Careful consideration of these issues in future cross-site studies will support clearer scientific inference that can better inform environmental management.     

Alpine treelines as ecological indicators of global climate change: Who has studied? What has been studied?

As the “front line” of coping with global climate change, the alpine treeline has been widely investigated by ecologists for a long time. In this study, 3180 articles in the Web of Science database from 2000 to 2021 are visualized by using CiteSpace bibliometric software from the perspectives of basic literature features (volume, discipline, journal, author, institution, and country), academic layout, research hotspot, and research frontier to have a deeper understanding of the development laws and hot spots in the alpine treeline. Results show that: (1) The number of papers published in alpine treeline research field is increasing annually, and the professional degree of papers (Sp) is 0.13–0.14, it is lower than that in other fields, implying a tendency of multi-disciplinary integration . (2) The core journals are headed by Arctic and Alpine Research, and J. Julio Camarero is the most prolific author in the field. (3) From the analysis of countries and institutions, the United States and the Chinese Academy of Sciences have leading positions in this research field. (4) Over the last 20 years, alpine treeline researchers have primarily focused on three key words (climate change, environmental characteristics, interspecific interactions, etc.), research sites (National Glacier Parks, the Alps, the Sygera Mountains, etc.), and research species (Norway spruce, European spruce, Abies georgei, etc.). (5) The first phase (2000–2009) focuses on the formation and changes of the alpine treeline in the context of climate change, and the second phase (2010−2021) focuses on the driving mechanisms of climatic factors, physiological change of tree species and grasslands on the treeline ecotones, and the influence of human activities (logging, grazing, etc.) on the alpine treeline. (6) Academic publications in this discipline have a short half-life (3.85 ± 1.70 years), and the aging rate is high and changing quickly. In the coming years, more research on alpine treeline will be devoted to explain the mechanism of tree species limitation in alpine treeline under climate change, influence of treeline changes the carbon and water cycles. There is a press need to explore the driving mechanism for treeline shift from the perspectives of plant physiology and soil carbon and nitrogen cycles.     

Too much teaching, not enough learning: what is the solution?

The curriculum is packed with so much content that teachers resort to telling students what they know and students simply commit facts to memory. The packed curriculum leaves little time for students to acquire a deep understanding of the subject or to develop life-long skills such as critical thinking, problem solving, and communication. However, learning is not committing a set of facts to memory, but the ability to use resources to find, evaluate, and apply information. This paper addresses these concerns by discussing "how we learn" and reviewing the literature on what works to improve learning. It is clear that active processing of information, not passive reception of information, leads to learning. That is, students must construct their own understanding of concepts, relationships, and procedures. Teachers can encourage this process by carefully considering the type and organization of information as well as instructional strategies. Specifically, teachers should reduce the total amount of factual information students are expected to memorize, reduce our use of the passive lecture format, and devote much more effort to helping students become active, independent learners and problem solvers. Collaborative learning activities, interactive models, educational games, and establishing a culture of inquiry/scholarship are critical for achieving these goals.     

Liquid‐based cytology: is this the way forward for cervical screening?

Liquid-based cytology (LBC) is currently being marketed as an alternative methodology to replace the conventional PAP smear in cervical cytology. A substantial body of literature exists in support of LBC, some of which is at least partially sponsored by product manufacturers. The majority of published literature in support of LBC employs Bethesda reporting terminology. In this study we have analysed published raw data and presented this in NHSCSP terminology. Claims relating to sensitivity, specificity and smear adequacy have then been considered with reference to this data. Our analysis of existing data does not support the nationwide implementation of LBC at present. Further studies are recommended in order to evaluate the place of this technology within the NHSCSP.     

Heritability: What's the point? What is it not for? A human genetics perspective

Genetica - In this paper, we explain the concept of heritability and describe the different methods and the genotype–phenotype correspondences used to estimate heritability in the specific...     

The new EU REACH regulation has finally been adopted: is this the end of the campaign trail... or just the beginning?

The final EU REACH legislation has recently been adopted. This article considers the progress that has been made toward reducing the numbers of animals likely to be required to fulfil the testing requirements, and also considers the benefits to animal welfare and science that have arisen since the original REACH system proposals were published in 2003. Several positive changes have been made, including: the use of exposure-based testing; the requirement for scientific justification of any proposed animal testing; mandatory data sharing; and the fact that the EU is to take responsibility for the development and validation of alternative methods. While these changes are to be commended, there is still much room for improvement, particularly with respect to the adoption of integrated testing strategies that make maximum use of non-animal approaches to expedite the risk assessment process of existing chemicals, with the use of refined and updated animal tests only as a last resort.     

How far do experimentally elevated CO2 levels reach into the surrounding? – An example using the 13C label of soil organic matter as an archive

During the last two decades, free air CO₂ enrichment (FACE) studies have been conducted to study the effects of rising atmospheric CO₂ concentrations on ecosystems. The distances between fumigated and control plots differ widely among those projects, but no experimental data are available how far into the surrounding area an effect of CO₂ fumigation can be detected. As the CO₂ gas added to the fumigated plots has a different ¹³C label than ambient atmospheric CO₂, its carbon can be traced into plants and soil organic matter (SOM). The Swiss FACE in Eschikon had been conducted for 10 years on a grassland site. After it had ended, we analysed soil samples from three transects extending from the plots to the surrounding area for their organic carbon (C_org) content and carbon isotopic signature. We determined the maximum spatial extension to which carbon originating from the fumigation was incorporated into SOM. A budget of the fumigation gas‐derived C_org in the upper 10 cm of the soil showed that approximately 50 kg C were stored within the plots, and an additional 31 kg C were stored in their immediate surroundings up to a distance of 9 m from the gas pipes. The presented approach provides us with a method to determine a posteriori the extension to which the CO₂ fumigation treatment contaminated its immediate surroundings during a FACE experiment. In the presented example, this showed that the distances between plots could have been reduced significantly. Although not generalizable to other experimental settings, the finding indicates that optimizing the spatial layout, e.g. by modelling gas dispersion, will be useful when planning future large‐scale FACE infrastructures. Our approach provides a solid basis to test such gas‐dispersion models on existing FACE sites before planning new sites.     

First attempts to crystallize a non-homogeneous sample of thioredoxin from Litopenaeus vannamei: What to do when you have diffraction data of a protein that is not the target?

The importance of sample homogeneity and purity in protein crystallization is essential to obtain high-quality diffracting crystals. Here, in an attempt to determine the crystal structure of thioredoxin 1 from whiteleg shrimp Litopenaeus vannamei (LvTrx), we inadvertently crystallized the hexameric inorganic pyrophosphatase of Escherichia coli (E-PPase) from a non-homogeneous sample product during the initial over-expression steps and partial purification of LvTrx. The structure determination and identification of the crystallized protein were derived from several clues: the failures in the Molecular Replacement (MR) trials using LvTrx coordinates as a search model, the unit cell parameters and space group determination, and essentially by the use of the program BALBES. After using the previously deposited E-PPase structure (PDB entry 1mjw) as a search model and the correct space group assignation, the MR showed an E-PPase complexed with SO₄^?2 with small changes in the sulfate ion binding region when it compares to previously deposited E-PPases in the PDB. This work stresses the importance of protein purity to avoid the risk of crystallizing a contaminant protein or how pure need to be a protein sample in order to increase the possibility to obtain crystals, but also serves as a reminder that crystallization is by itself a purification process and how the program BALBES can be useful in the crystal structure determination of previously deposited structures in the PDB.     

The lectin from the mushroom Pleurotus ostreatus: a phosphatase-activating protein that is closely associated with an α-galactosidase activity: A part of this paper has been presented as a preliminary report at the 17th Interlec. Meeting 1997 in Würzburg,Germany

The lectin from the mushroom Pleurotus ostreatus described earlier [F. Conrad, H. Rüdiger, The lectin from Pleurotus ostreatus: purification, characterization and interaction with a phosphatase, Phytochemistry 36 (1994) 277–283] was further characterized. Determination of the isoelectric point by capillary electrophoresis gave a value of 7.6. The dissociation constant of the lectin-α-lactose-1-phosphate complex determined by capillary electrophoresis is 3 mM. The activation of an endogenous phosphatase by the lectin as found earlier for the pseudosubstrate p-nitrophenylphosphate was confirmed also for naturally occurring substrates as ADP and ATP. We observed that at all purification steps the lectin is accompanied by an α-galactosidase activity. Both activities could neither be resolved by electrophoresis under non-denaturing conditions nor by affinity chromatography. However, carbohydrate binding by the lectin and carbohydrate processing by the enzyme are not due to the same site since: (i) the lectin accepts both α- and β-glycosides whereas the enzyme activity is restricted to the α-anomer; (ii) the interaction with erythrocytes leads to a stable agglutinate, i.e. no ‘clot-dissolving activity’ [C.N. Hankins, J.I. Kindinger, L.M. Shannon, Legume α-galactosidases which have hemagglutinin properties, Plant Physiol. 65 (1980) 618–622] is observed; (iii) the α-galactosidase activity is inhibited by galactose but not by a β-galactoside. Therefore, lectin and enzymatic activities are either properties of two tightly associated proteins, or of just one molecule. The kinetic parameters of the lectin-associated α-galactosidase activity for p-nitrophenyl-α-galactopyranoside are: K_M=2.5 mM, k_cat=66 s⁻¹, and K_I=20 mM for the inhibitor d-galactose.