Length–weight relationships for six fish species from the middle of the Yalu Tsangpo River,China

This paper reports the length–weight relationships for six fish species belonging to the Cyprinidae from the middle of the Yalu Tsangpo River in China. Samples were obtained by electroshock and drift net fishing techniques (mesh size 2 cm × 3 cm; 200 m net length) in April and September to October 2014. Length–weight relationships estimates for these species were not available in FishBase. A total of 737 specimens were used to estimate the a and b parameters. New maximum total lengths are also reported for six species. The r² values range from 0.98 to 0.99. Values of b vary from 2.88 to 3.19.     

Species–area curve and distance–decay relationships indicate habitat thresholds of ectomycorrhizal fungi in an old‐growth Pseudotsuga menziesii landscape

Aim

Ectomycorrhizal fungi (EMF) are a diverse and essential biota of forests that are vulnerable to species loss through reductions in late‐seral habitat. We examined how the spatial ecology of this biota, particularly distance–decay and species–area relationships, could better inform habitat thresholds for EMF conservation planning.

Location

Southeast Vancouver Island near Victoria, British Columbia, Canada.

Methods

Using a stratified sampling design, 11 plots (0.15 ha in size) were established at 0.05–17.5 km apart across 2,800 ha of mesic old‐growth Pseudotsuga menziesii var. menziesii and Tsuga heterophylla forests. EMF communities were compiled through molecular analysis of root tips and sporocarps.

Results

The EMF community was comprised of many Cortinarius, Piloderma, Russula and Tricholoma species typical of mesotrophic habitat. A total of 238 EMF species were observed, of which 86 species were detected only once. The ratio of average species richness per plot (84 taxa) to total richness was low at 0.35, and inherent stochasticity of the EMF community was estimated to be 31% community dissimilarity for species incidence. Distance decay of EMF communities was nonlinear, with an estimated slope break at 2.6 km, followed by a largely unchanging trend in β‐diversity. Accumulated species–area curves were fitted best by the cumulative Weibull sigmoid model, and the asymptote (367 species) at approx. 50 ha was consistent with nonparametric estimates of γ‐diversity (342–362 spp.).

Main conclusions

Old‐growth forests host an impressive amount of EMF diversity, and many of the Ramaria, Inocybe and Russula species are likely to be endemic to the Pacific Northwest. Both niche‐ and neutral‐based processes influenced EMF community composition, resulting in a minimum threshold of 50 ha (1.8% of the sample area) for capturing γ‐diversity. These spatial patterns will help design and evaluate conservation efforts, such as retention forestry, to sustain fully diverse EMF communities over managed landscapes.

     

Length-weight relationship of 74 fish species caught in the continental coast of Ecuador

This work analysis the length-weight relationships for fish species captured by artisanal fishery along the continental coast of Ecuador. Fishermen used the following fishing gear: beach seine nets (5.1–31.8 mm), shrimp trawl nets (21.8–31.8 mm) and bottom gill nets (54.1–203.2 mm). Sampling took place during the years 2012 and 2014. Frequency of sampling was monthly, and it was completed systematically from Southern toward Northern Provinces. Length-weight relationship (LWR) was realized by the power model (y = a × x^b), for species with a bivariate dataset >70. A total of 59 commercial and 15 non-commercial species were registered. For 74 species, our analysis including a higher total length not reported in LWR estimates previously. The determination coefficient (r²) value was always above 0.95.     

The value of scattered trees for wildlife: Contrasting effects of landscape context and tree size

Aim

The biodiversity value of scattered trees in modified landscapes is often overlooked in planning and conservation decisions. We conducted a multitaxa study to determine how wildlife abundance, species richness and community composition at individual trees are affected by (1) the landscape context in which trees are located; and (2) the size of trees.

Location

Canberra, south‐eastern Australia.

Methods

Trunk arthropod, bat and bird surveys were undertaken over 3 years (2012–2014) at 72 trees of three sizes (small (20–50 cm DBH), medium (51–80 cm), large (≥80 cm)) located in four landscape contexts (reserves, pasture, urban parklands, urban built‐up areas).

Results

Landscape context affected all taxa surveyed. Trunk arthropod communities differed between trees in urban built‐up areas and reserves. Bat activity and richness were significantly reduced at trees in urban built‐up areas suggesting that echolocating bats may be disturbed by high levels of urbanization. Bird abundance and richness were highest at trees located in modified landscapes, highlighting the value of scattered trees for birds. Bird communities also differed between non‐urban and urban trees. Tree size had a significant effect on birds but did not affect trunk arthropods and bats. Large trees supported higher bird abundance, richness and more unique species compared to medium and small trees.

Main conclusions

Scattered trees support a diversity of wildlife. However, landscape context and tree size affected wildlife in contrasting ways. Land management strategies are needed to collectively account for responses exhibited by multiple taxa at varying spatial scales. We recommend that the retention and perpetuation of scattered trees in modified landscapes should be prioritized, hereby providing crucial habitat benefits to a multitude of taxa.     

Length–weight and length–length relationships of three Blenny species from the Persian Gulf and the Gulf of Oman

The present study provides the length–weight and length–length relationships information (LWR & LLR) for three Blenny species; Antennablennius adenensis from the coast of Larak Island in the Persian Gulf and Istiblennius pox and Omobranchus mekranensis, which were captured in the coasts of Chabahar city in the Gulf of Oman, Iran. Total length (TL) and standard length (SL) were determined as well as weight. Specimens were collected occasionally in summer 2017 and winter 2018 by Hand net. The length–weight parameter b for these species was 2.84, 3.29 and 3.06 respectively with a high coefficient of determination (r² ≥ 0.95). All LLRs were highly correlated (r² > 0.99). All three species had no previous report for LWR and LLR estimates in FishBase.     

Female-driven mechanisms,ejaculate size and quality contribute to the lower fertility of <Emphasis Type="Italic">sex-ratio</Emphasis> distorter males in <Emphasis Type="Italic">Drosophila simulans</Emphasis>

Background  

Sex-ratio meiotic drive refers to the preferential transmission of the X chromosome by XY males. The loss of Y-bearing sperm is caused by an X-linked distorter and results in female-biased progeny. The fertility of sex-ratio (SR) males expressing the distorter is usually strongly reduced compared to wild-type males, especially when they are in competition. The aim of this study was to identify the post-copulatory mechanisms that lower the fertility of SR males in Drosophila simulans. Parameters contributing to male fertility were measured in single and double mating conditions.     

Role of saprophagous fly biodiversity in ecological processes and urban ecosystem services

1. Direct consumption of organic matter by the saprophagous larvae provides the ecosystem with a fundamental service by recycling nutrients and reducing exposure to decomposing matter. The present study aimed to assess the functional role of saprophagous flies in the mass loss of different types of decomposing organic matter. 2. Two types of common urban waste were used to measure the role of flies in reducing organic matter: chicken viscera (chicken) and a mixture of flour and uncooked eggs (flour and eggs), representing leftover food. Ten traps baited with each substrate, under field conditions, allowed fly access (exposed to flies) and three traps from each substrate did not (unexposed controls); adult flies entering the traps or emerging from the substrates and substrate mass loss were recorded. 3. Species from Calliphoridae, Sarcophagidae, Muscidae, and Fanniidae families were collected mainly in traps baited with chicken, with Phoridae being the most abundant in traps with flour and eggs as bait. A significantly richer (P < 0.05) assemblage of fly species accessed the traps baited with chicken viscera (21 species) compared with those emerging (11 species), whereas similar numbers of species accessed (n = 5) or emerged (n = 1) from traps baited with flour and eggs (average richness accessing 7.97, emerging 2.83). Chicken substrate mass loss and species richness were positively related (r = 0.56, P = 0.001). In traps where richness was larger than 10 species, the substrates were reduced by more than 85% of their initial weight compared with unexposed controls, which lost 30%. Substrate mass loss significantly increased with the abundance of flies (r = 0.73, P < 0.0001). 4. The results of the present study support the functional role of saprophagous species diversity on the decomposition rates of organic matter, reinforcing the negative consequences of loss or gain of species in modified landscapes and for ecosystem function.     

Unveiling the environmental drivers of intraspecific body size variation in terrestrial vertebrates

Aim

Whether intraspecific spatial patterns in body size are generalizable across species remains contentious, as well as the mechanisms underlying these patterns. Here we test several hypotheses explaining within-species body size variation in terrestrial vertebrates including the heat balance, seasonality, resource availability and water conservation hypotheses for ectotherms, and the heat conservation, heat dissipation, starvation resistance and resource availability hypotheses for endotherms.

Location

Global.

Time period

1970–2016.

Major taxa studied

Amphibians, reptiles, birds and mammals.

Methods

We collected 235,905 body size records for 2,229 species (amphibians = 36; reptiles = 81; birds = 1,545; mammals = 567) and performed a phylogenetic meta-analysis of intraspecific correlations between body size and environmental variables. We further tested whether correlations differ between migratory and non-migratory bird and mammal species, and between thermoregulating and thermoconforming ectotherms.

Results

For bird species, smaller intraspecific body size was associated with higher mean and maximum temperatures and lower resource seasonality. Size–environment relationships followed a similar pattern in resident and migratory birds, but the effect of resource availability on body size was slightly positive only for non-migratory birds. For mammals, we found that intraspecific body size was smaller with lower resource availability and seasonality, with this pattern being more evident in sedentary than migratory species. No clear size–environment relationships were found for reptiles and amphibians.

Main conclusions

Within-species body size variation across endotherms is explained by disparate underlying mechanisms for birds and mammals. Heat conservation (Bergmann's rule) and heat dissipation are the dominant processes explaining biogeographic intraspecific body size variation in birds, whereas in mammals, body size clines are mostly explained by the starvation resistance and resource availability hypotheses. Our findings contribute to a better understanding of the mechanisms behind species adaptations to the environment across their geographic distributions.     

Hormonal induction of gamete release,and in-vitro fertilisation,in the critically endangered Southern Corroboree Frog, <Emphasis Type="Italic">Pseudophryne corroboree</Emphasis>

Background  

Conservation Breeding Programs (CBP's) are playing an important role in the protection of critically endangered anuran amphibians, but for many species recruitment is not successful enough to maintain captive populations, or provide individuals for release. In response, there has been an increasing focus on the use of Assisted Reproductive Technologies (ART), including the administration of reproductive hormones to induce gamete release followed by in vitro fertilisation. The objective of this study was to test the efficacy of two exogenous hormones to induce gamete release, for the purpose of conducting in vitro fertilisation (IVF), in one of Australia's most critically endangered frog species, Pseudophryne corroboree.     

Assessing habitat loss and fragmentation and their effects on population viability of forest specialist birds: Linking biogeographical and population approaches

Aim

Biogeographic approaches usually have been developed apart from population ecology, resulting in predictive models without key parameters needed to account for reproductive and behavioural limitations on dispersal. Our aim was to incorporate fully spatially explicit population traits into a classic species distribution model (SDM) using Geographic Information Systems (GIS), aiming at conservation purposes.

Location

Southern South America.

Methods

Our analysis incorporates the effects of habitat loss and fragmentation on population viability and therefore provides insights into how much spatially explicit population traits can improve the SDM prediction of habitable habitat. We utilized a well‐studied focal endemic bird of South American temperate rainforests (Scelorchilus rubecula). First, at a large scale, we assessed the historical extent habitat based on climate envelopes in an SDM. Second, we used a land cover change analysis at a regional scale to account for recent habitat loss and fragmentation. Third, we used empirically derived criteria to predict population responses to fragmented forest landscapes to identify actual losses of habitat and population. Then we selected three sites of high conservation value in southern Chile and applied our population model. Finally, we discuss the degree to which spatially explicit population traits can improve the SDM output without intervening in the modelling process itself.

Results

We found a historical habitat loss of 39.12% and an additional forest cover loss of 3.03% during 2000–2014; the latter occurred with a high degree of fragmentation, reducing the overall estimation of (1) carrying capacity by ?82.4%, ?33.1% and ?45.1% and (2) estimated number of pairs on viable populations by ?84.1%, ?33.0% and ?54.6% on the three selected sites.

Main conclusion

We conclude that our approach sharpened the SDM prediction on environmental suitability by 54.4%, adjusting the habitable area by adding population parameters through GIS, and allowing to incorporate other phenomena as fragmentation and habitat loss.

     

Length–weight relationships of three schizothoracinae fish species from the Niyang River,a branch of the Yarlung Zangbo River,Tibet, China

The focus was on the length–weight relationships of three schizothoracinae species endemic to Tibet, including Schizothorax oconnori Lloyd, 1908, Ptychobarbus dipogon (Regan, 1905) and Schizopygopsis younghusbandi Regan, 1905, all of which are characterized by slow growth, late maturation and vulnerability to the environment (Ma et al., 2010, 2012; Duan et al., 2014). Among them, Schizothorax oconnori is an endangered fish and listed in the China species Red List (Wang and Xie, 2004, 2009). Samples were obtained by drift net fishing (mesh size 2 cm × 3 cm; 50 m net length) in November 2008. The r² value was 0.94, 0.97, 0.98 and the b value 3.51, 3.12, 3.16, representing Schizothorax oconnori, Ptychobarbus dipogon, and Schizopygopsis younghusbandi, respectively.     

Screening of white‐rot fungi for bioprocessing of wheat straw into ruminant feed

Aim

In this study, the biological variation for improvement of the nutritive value of wheat straw by 12 Ceriporiopsis subvermispora, 10 Pleurotus eryngii and 10 Lentinula edodes strains was assessed. Screening of the best performing strains within each species was made based on the in vitro degradability of fungal‐treated wheat straw.

Methods and Results

Wheat straw was inoculated with each strain for 7 weeks of solid state fermentation. Weekly samples were evaluated for in vitro gas production (IVGP) in buffered rumen fluid for 72 h. Out of the 32 fungal strains studied, 17 strains showed a significantly higher (P < 0·05) IVGP compared to the control after 7 weeks (227·7 ml g^?1 OM). The three best Ceriporiopsis subvermispora strains showed a mean IVGP of 297·0 ml g^?1 OM, while the three best P. eryngii and L. edodes strains showed a mean IVGP of 257·8 and 291·5 ml g^?1 OM, respectively.

Conclusion

Ceriporiopsis subvermispora strains show an overall high potential to improve the ruminal degradability of wheat straw, followed by L. edodes and P. eryngii strains.

Significance and Impact of the Study

Large variation exists within and among different fungal species in the valorization of wheat straw, which offers opportunities to improve the fungal genotype by breeding.     

Length–weight and length–length relationships of three Ambassid fishes from the Ganges River (NW Bangladesh)

Length–weight relationships (LWRs) and length–length relationships (LLRs) are presented for the first time for three Ambassid fish species from the Ganges River, northwestern (NW) Bangladesh. Fish were sampled with traditional fishing gear including cast net (mesh size ranges from 1.0 to 2.0 cm), gill net (mesh size ranges from 1.5 to 2.5 cm), square lift net (mesh size ~ 1.0 cm) and conical and box trap, October 2014 to September 2015. Allometric coefficient (b) values were 3.00 for Chanda nama, 3.10 for Parambassis lala and 3.23 for Parambassis ranga, respectively. Additionally, the LLRs were highly significant with r² ≥ .958. The present observations would be an effective tool for their stock assessment in the Ganges River, NW Bangladesh and surrounding ecosystems.     

Complex inter‐island colonization and peripatric founder speciation promote diversification of flightless Pachyrhynchus weevils in the Taiwan–Luzon volcanic belt

Aim

We investigated the spatial and temporal patterns of diversification among colourful and flightless weevils, the Pachyrhynchus orbifer complex, to test the stepping‐stone hypothesis of colonization across the Taiwan–Luzon volcanic belt.

Location

Southeast Asia.

Methods

The phylogeny of the P. orbifer complex was reconstructed from a multi‐locus data set of mitochondrial and nuclear genes using maximum likelihood in RAxML and Bayesian inference in MRBAYES. Likelihood‐based tests in CONSEL were used to evaluate alternative tree topologies. Divergence times were estimated in beast based on a range of mutation rates. Ancestral range and biogeographical history were reconstructed using Bayesian binary MCMC (BBM) methods in RASP and in BioGeoBEARS. Demographic histories were inferred using the extended Bayesian skyline plot (EBSP). Species boundaries were tested using BPP.

Results

The phylogeny of the P. orbifer complex indicated strong support for seven reciprocally monophyletic lineages grouped by current island boundaries (Camiguin, Fuga, Dalupiri, Calayan, Babuyan, Orchid and Yaeyama Islands), except for a sister Green + Itbayat lineage. Complex and stochastic colonization of P. orbifer was inferred to have involved both northward and southward directions with short‐ and long‐distance dispersal events, which are strongly inconsistent with the strict stepping‐stone hypothesis. Divergence time estimates for all extant island lineages (<1 Myr of Middle Pleistocene) are much more recent than the geological ages (22.4–1.7 Myr) and subaerial existence (c. 3 Myr) of the islands. The statistically delimited seven cryptic species imply that the diversity of Pachyrhynchus from small peripheral islands continues to be largely under‐estimated.

Main conclusions

The non‐linear, more complex spatial and temporal settings of the archipelago and stochastic dispersal were probable key factors shaping the colonization history of the P. orbifer complex. Speciation of the P. orbifer complex may have occurred only between islands, indicating that peripatric speciation through the founders of stochastic dispersals was the major evolutionary driver.     

Climate‐driven substitution of habitat‐forming species leads to reduced biodiversity within a temperate marine community

Aim

In marine ecosystems, habitat‐forming species (HFS) such as reef‐building corals and canopy‐forming macroalgae alter local environmental conditions and can promote biodiversity by providing biogenic living space for a vast array of associated organisms. We examined community‐level impacts of observed climate‐driven shifts in the relative abundances of two superficially similar HFS, the warm‐water kelp Laminaria ochroleuca and the cool‐water kelp Laminaria hyperborea.

Location

Western English Channel, north‐east Atlantic

Methods

We compared algal and invertebrate assemblages associated with kelp stipes and holdfasts, across multiple sites and sampling events. Significant differences were recorded in the structure of assemblages between the host kelp species at each site and event.

Results

Assemblages associated with stipes of the cool‐water HFS were, on average, >12 times more diverse and supported >3600 times more biomass compared with the warm‐water HFS. Holdfast assemblages also differed significantly between species, although to a lesser extent than those associated with stipes. Overall, assemblages associated with the warm‐water HFS were markedly impoverished and comprised far fewer rare or unique taxa.

Main conclusions

While previous research has shown how climate‐driven loss of HFS can cause biodiversity loss, our study demonstrates that climate‐driven substitutions of HFS can also lead to impoverished assemblages. The indirect effects of climate change remain poorly resolved, but shifts in the distributions and abundances of HFS may invoke widespread ecological change, especially in marine ecosystems where facilitative interactions are particularly strong.     

The mechanism for stochastic resonance enhancement of mammalian auditory information processing

Background  

In a mammalian auditory system, when intrinsic noise is added to a subthreshold signal, not only can the resulting noisy signal be detected, but also the information carried by the signal can be completely recovered. Such a phenomenon is called stochastic resonance (SR). Current analysis of SR commonly employs the energies of the subthreshold signal and intrinsic noise. However, it is difficult to explain SR when the energy addition of the signal and noise is not enough to lift the subthreshold signal over the threshold. Therefore, information modulation has been hypothesized to play a role in some forms of SR in sensory systems. Information modulation, however, seems an unlikely mechanism for mammalian audition, since it requires significant a priori knowledge of the characteristics of the signal.     

Applying the polio model to New Zealand: The contingent role of socioeconomic status in infectious disease mortality

Objectives

The traditional polio model depicts a positive relationship between the disease and socioeconomic status (SES), with higher SES associated with exposure to the poliovirus beyond infancy/early childhood and a higher mortality rate. This study uses occupation data from non-Māori New Zealand death registrations and the Census to assess evidence for differential mortality by SES during the polio epidemics of 1916, 1924–25, and 1936–37.

Materials and Methods

Polio deaths were classified by father's occupation using the Caversham Project scheme, which includes nine collapsible urban occupational strata and codes rural occupations separately. Evidence for differential mortality and differences in age at death between rural and urban areas and among urban occupational strata was assessed using nonparametric Mann–Whitney U, Kruskal–Wallis, Jonckheere-Terpstra, and chi-square tests.

Results

There was limited evidence of either differential mortality or differences in age at death among collapsed urban strata, mainly in 1924/25, only partially meeting the expectations of the traditional polio model. For 1916 only, the rural group had a higher proportion of deaths (χ² (1, n = 95) = 8.341, p = 0.0039, φ = 0.30)) and higher age at death (U = 828.00, p = 0.026, r = −0.23).

Discussion

These results suggest that rural New Zealand was more isolated from poliovirus infection prior to 1916, but thereafter rural and urban groups faced more similar exposure patterns and mortality—at least among non-Māori. The degree to which occupational categories reflect conditions of exposure requires further research.

     

Contrasting Demographic Structure of Short‐ and Long‐lived Pioneer Tree Species on Amazonian Forest Edges

Although tropical forests have been rapidly converted into human‐modified landscapes, tree species response to forest edges remains poorly examined. In this study, we addressed four pioneer tree species to document demographic shifts experienced by this key ecological group and make inferences about pioneer response to forest edges. All individuals with dbh ≥ 1 cm of two short‐lived (Bellucia grossularioides and Cecropia sciadophylla) and two long‐lived species (Goupia glabra and Laetia procera) were sampled in 20 1‐ha forest edge plots and 20 1‐ha forest interior plots in Oiapoque and Manaus, Northeast and Central Amazon, respectively. As expected, pioneer stem density with dbh ≥ 1 cm increased by around 10–17‐fold along forest edges regardless of species, lifespan, and study site. Edge populations of long‐lived pioneers presented 84–94 percent of their individuals in sapling/subadult size classes, whereas edge populations of short‐lived pioneers showed 56–97 percent of their individuals in adult size classes. These demographic biases were associated with negative and positive net adult recruitment of long‐ and short‐lived pioneers, respectively. Our population‐level analyses support three general statements: (1) native pioneer tree species proliferate along forest edges (i.e., increased density), at least in terms of non‐reproductive individuals; (2) pioneer response to edge establishment is not homogeneous as species differ in terms of demographic structure and net adult recruitment; and (3) some pioneer species, particularly long‐lived ones, may experience population decline due to adult sensitivity to edge‐affected habitats.     

The microbiology of Bandji,palm wine of Borassus akeassii from Burkina Faso: identification and genotypic diversity of yeasts,lactic acid and acetic acid bacteria

Aim

To investigate physicochemical characteristics and especially genotypic diversity of the main culturable micro‐organisms involved in fermentation of sap from Borassus akeassii, a newly identified palm tree from West Africa.

Methods and Results

Physicochemical characterization was performed using conventional methods. Identification of micro‐organisms included phenotyping and sequencing of: 26S rRNA gene for yeasts, 16S rRNA and gyrB genes for lactic acid bacteria (LAB) and acetic acid bacteria (AAB). Interspecies and intraspecies genotypic diversities of the micro‐organisms were screened respectively by amplification of the ITS1‐5.8S rDNA‐ITS2/16S‐23S rDNA ITS regions and repetitive sequence‐based PCR (rep‐PCR). The physicochemical characteristics of samples were: pH: 3·48–4·12, titratable acidity: 1·67–3·50 mg KOH g^?1, acetic acid: 0·16–0·37%, alcohol content: 0·30–2·73%, sugars (degrees Brix): 2·70–8·50. Yeast included mainly Saccharomyces cerevisiae and species of the genera Arthroascus, Issatchenkia, Candida, Trichosporon, Hanseniaspora, Kodamaea, Schizosaccharomyces, Trigonopsis and Galactomyces. Lactobacillus plantarum was the predominant LAB species. Three other species of Lactobacillus were also identified as well as isolates of Leuconostoc mesenteroides, Fructobacillus durionis and Streptococcus mitis. Acetic acid bacteria included nine species of the genus Acetobacter with Acetobacter indonesiensis as predominant species. In addition, isolates of Gluconobacter oxydans and Gluconacetobacter saccharivorans were also identified. Intraspecies diversity was observed for some species of micro‐organisms including four genotypes for Acet. indonesiensis, three for Candida tropicalis and Lactobacillus fermentum and two each for S. cerevisiae, Trichosporon asahii, Candida pararugosa and Acetobacter tropicalis.

Conclusion

fermentation of palm sap from B. akeassii involved multi‐yeast‐LAB‐AAB cultures at genus, species and intraspecies level.

Significance and Impact of the Study

First study describing microbiological and physicochemical characteristics of palm wine from B. akeassii. Genotypic diversity of palm wine LAB and AAB not reported before is demonstrated and this constitutes valuable information for better understanding of the fermentation which can be used to improve the product quality and develop added value by‐products.