Population evolution of western Canary Island lizards (Gallotia galloti): 4-base endonuclease restriction fragment length polymorphisms of mitochondrial DNA

The mitochondrial DNA evolution of the western Canary Island lacertid, Galloti galloti , was studied using six restriction enzymes ( Hae III, Mva I, Hin fl, Taq I, Msp I and Dsa V). The population phytogeny ( G. stehlini , from the adjacent island of Gran Canada, was used as an outgroup) based on 56 restriction fragments from the first two enzymes indicates two distinct lineages; a 'northern' lineage of La Palma, north Tenerife and south Tenerife populations and a 'southern' lineage of populations from Gomera and Hierro. The relationships within the northern lineage are also supported by an additional analysis of 132 restriction fragments from the remaining four enzymes. This molecular phylogeny argues for the recognition of two subspecies corresponding to the two main lineages and against the recognition of the six current subspecies which are based on inadequate 'conventional' criteria.     

Helminth infracommunities of a population of the Gran Canaria giant lizard Gallotia stehlini

A survey of gastro-intestinal helminth communities of Gallotia stehlini (Sauria: Lacertidae) from Gran Canaria island (Canary Archipelago, Spain), was conducted to determine the prevalence, abundance and species diversity of intestinal parasites in these lizards. Pharyngodonid nematodes were the most common intestinal helminths, three species being Gallotia specialists. Helminth infracommunities of G. stehlini were rich and appear to be closer to the interactive end of the continuum isolationist-interactive helminth communities, according to the high values of helminth diversity. It is the first case of a saurian reptile showing this kind of diverse helminth infracommunity, produced by a large size, a wide-ranging plant diet and exposure to helminths with direct life-cycles.     

Status and relationships of the extinct giant Canary Island lizard Gallotia goliath (Reptilia: Lacertidae), assessed using ancient mtDNA from its mummified remains

Ancient mitochondrial DNA sequences (378 base pairs of cytochrome b and 368 of 12S rRNA) extracted from a mummified extinct giant lizard, Gallotia goliath , from eastern Tenerife, Canary Islands, were used to assess the species status and relationship of this form within the genus. G. goliath is clearly a member of the G. simonyi group of the western Canary islands (Tenerife, La Gomera, El Hierro and La Palma) and is not closely related to the giant G. stehlini of Gran Canaria. Contrary to recent opinion, it is phylogenetically distinct, within the G. simonyi group, from the extant G. simonyi of El Hierro and also from the recently discovered live G. gomerana on La Gomera and from G. intermedia in north-western Tenerife. It may be the sister taxon of either all the other members of the G. simonyi group or of G. intermedia . The phylogenetic distinctness of G. goliath makes Tenerife unique among oceanic islands in having had one giant and two medium-sized lizard species that were probably substantially herbivorous, the others being G. intermedia and G. galloti . Gallotia shows great community differences on other islands in the Canaries, two having a single small species, one a single giant, and three a giant and a medium-sized form. © 2003 The Linnean Society of London, Biological Journal of the Linnean Society , 2003, 80 , 659–670.     

Brief communication: immunoglobulin (Gm and Km) allotypes in two populations of Catalonia (Spain)

Serum samples from two populations of Catalonia, Spain, 208 from Olot (Gerona) and 209 from Tortosa (Tarragona), were typed for G1m (1, 2, 3, 17), G3m (5, 10, 11, 13, 14, 15, 16, 26), and Km (1). The Gm patterns of the Catalonian populations are characterized by the presence of four haplotypes, Gm 1,17;21,26 Gm 1,2,17;21,26 Gm 1,3;5,10,11,13,14,26 and Gm 3;5,10,11,13,14,26. The homogeneity for haplotype Gm 1,17;21,26 among our data and other European populations suggests the existence of an isofrequency line which starts from the Mediterranean zone of Iberian Peninsula and continues through the northwestern part of Europe. From this line a decreasing cline towards the south can be observed. For the haplotype Gm 1,2;17,21,26, affinities are observed between Catalonian populations and other populations from central Europe. This confirms the existence of a gradient towards low values from NW to SE. The presence of the typical Mongoloid haplotype Gm 1,3;5,10,11,13,14,26 is discussed in this paper. No significant differences in the frequencies of the Km1 allele were observed among the European populations.     

Alkaloid diversity in Galanthus elwesii and Galanthus nivalis

Seventy alkaloids of galanthamine, lycorine, homolycorine, tazettine, haemanthamine, narciclasine, and tyramine types were detected by GC/MS in 25 Galanthus elwesii and seven Galanthus nivalis populations, collected from different locations in Bulgaria. Intraspecies diversity in the alkaloid profiles regarding the main alkaloid types (chemotypes) was observed. Tyramine-type protoalkaloids (namely, hordenine and its derivatives) were dominant in 19 populations of G. elwesii. In other populations of G. elwesii, the plants accumulated mainly homolycorine-, lycorine-, and galanthamine-type alkaloids. The alkaloid profiles of G. nivalis were dominated by narciclasine-, galanthamine-, lycorine-, haemanthamine-, or tazettine-type compounds. Geographical distribution of chemotypes indicated a relationship between populations, since adjacent populations often displayed similar alkaloid profiles. The results from year-to-year sampling and transplantation experiments imply genetic determination of alkaloid synthesis in the two studied species of Galanthus.     

Association between presence of <Emphasis Type="Italic">Triticum timopheevii</Emphasis> introgression and D-genome retention in hexaploid/tetraploid wheat crosses

The 2G Triticum timopheevii introgression harbours genes for multiple disease resistance and quality traits in bread wheat. In order to transfer this segment from bread wheat into durum, the bread wheat line Sunguard, which carries this introgressed 2G segment was crossed with three tetraploid durum parents. A significant difference was observed in the segregation ratio of the 2G segment in the different crosses at the F₂ generation with two of the three populations indicating segregation distortion against the hexaploid 2G segment. In these populations, the presence of the 2G segment was strongly correlated with the presence of D-genome chromosomes. These results were confirmed in the F₄ generation of these populations. Six plants were identified in the F₄ generation, which had retained the introgressed 2G segment in a homozygous condition and did not have a complete D-genome set. Two of these lines only had two non-homologous D-genome chromosomes in the F₅ generation. Thus, the 2G segment and possibly other translocations can be transferred into durum wheat through hexaploid/tetraploid hybridisation.     

Spatial genetic structure and clonal diversity of island populations of lady's slipper (Cypripedium calceolus) from the Biebrza National Park (northeast Poland)

Three populations of the rare and endangered plant species Cypripedium calceolus were included in a study of genetic diversity and spatial genetic structure in the Biebrza National Park, northeast Poland. Analysis of 11 allozyme loci indicate that the populations of this species contained high genetic variability (P = 45.5%, A= 1.73). On the other hand, the genetic differentiation (FST = 0.014, P < 0.05) among C. calceolus populations was very low when compared to other species with similar life history characteristics. The observed high rate of gene flow (Nm = 18) may suggest that the populations studied derived from each other in the recent past. Five polymorphic allozyme markers identified 109 multilocus genotypes in three populations and the majority of them (67%) were population-specific. One of the populations studied, characterized by particularly extensive vegetative reproduction, showed the lowest clonal diversity (G/N = 0.15) and heterozygosity (HO = 0.111) values and the highest FIS(0.380), when compared to other two populations (G/N = 0.26-0.27, HO= 0.166-178, FIS = 0.024-0.055). This may indicate that clonal reproduction has an important influence on the genetic structure of C. calceolus populations. The longevity of genets, the out-crossing breeding system and the presence of recruitment from seeds are factors maintaining genetic diversity in C. calceolus.     

Analysis of mitochondrial DNA in Bolivian llama,alpaca and vicuna populations: a contribution to the phylogeny of the South American camelids

The objectives of this work were to assess the mtDNA diversity of Bolivian South American camelid (SAC) populations and to shed light on the evolutionary relationships between the Bolivian camelids and other populations of SACs. We have analysed two different mtDNA regions: the complete coding region of the MT‐CYB gene and 513 bp of the D‐loop region. The populations sampled included Bolivian llamas, alpacas and vicunas, and Chilean guanacos. High levels of genetic diversity were observed in the studied populations. In general, MT‐CYB was more variable than D‐loop. On a species level, the vicunas showed the lowest genetic variability, followed by the guanacos, alpacas and llamas. Phylogenetic analyses performed by including additional available mtDNA sequences from the studied species confirmed the existence of the two monophyletic clades previously described by other authors for guanacos (G) and vicunas (V). Significant levels of mtDNA hybridization were found in the domestic species. Our sequence analyses revealed significant sequence divergence within clade G, and some of the Bolivian llamas grouped with the majority of the southern guanacos. This finding supports the existence of more than the one llama domestication centre in South America previously suggested on the basis of archaeozoological evidence. Additionally, analysis of D‐loop sequences revealed two new matrilineal lineages that are distinct from the previously reported G and V clades. The results presented here represent the first report on the population structure and genetic variability of Bolivian camelids and may help to elucidate the complex and dynamic domestication process of SAC populations.     

Comparative Responses of Globodera rostochiensis and G. pallida to Hatching Chemicals

Globodera rostochiensis and G. pallida responded similarly to hatch stimulation by potato root leachate, but proportionally more second-stage juveniles (J2s) of G. rostochiensis hatched than of G. pallida in response to picrolonic acid, sodium thiocyanate, alpha-solanine, and alpha-chaconine. Fractionation of the potato root leachate identified hatching factors with species-selective (active toward both species but stimulating greater hatch of one species than the other), -specific (active toward only one species), and -neutral (equally active toward both species) activities. In a comparison of two populations of each of the two potato cyst nematode (PCN) species, however, greater similarity in response to the individual hatching factors was observed among populations of different species produced under the same conditions than among different populations of the same PCN species. Smaller numbers of species-specific and species-selective hatching factor stimulants and hatching inhibitors than of hatching factors were resolved. In a study to determine whether the different hatching responses of the two species to the same root leachate were associated with different ratios of species-selective and species-specific hatching factors, G. rostochiensis pathotype Ro1 exhibited greater hatch than did G. pallida pathotype Pa2/3 in response to leachate from older plants (more than 38 days old), while G. pallida exhibited greater hatch in response to leachate from younger plants (less than 38 days old); the response of G. pallida pathotype Pal with respect to plant age was intermediate between the other two populations. Combined molecular exclusion-ion exchange chromatography of the root leachates from plants of different ages revealed an increase in the proportion of G. rostochiensis-specific and -selective hatching factors as the plants aged.     

SUBFOSSIL PETREL BONES FROM THE CHATHAM ISLANDS

The breeding community of petrels on the Chatham Islands has previously seemed curiously poor compared to that of analogous stations in the Indian Ocean or South Atlantic (14 species compared with 18 in the Tristan-Gough group). Examination of subfossil deposits from the Chatham Islands probably dating from the early stages of human colonization which occurred within the last few hundred years reveals remains of at least 20 petrels, all of which except one may well have bred in the past, without including storm petrels, of which two species are still known to breed while others may also have bred in the past. The grand total of at least 21 breeding species, many apparently in vast numbers, would probably make the archipelago the most important breeding station for petrels in the world at the time of the first human colonization. It seems possible that in addition to the present breeding species the following may have bred: at least one endemic species of gadfly petrel, the Magenta Petrel Pterodroma magentae , and local populations of at least two other gadfly petrels, two shearwaters of the genus Procellaria and two of the genus Puffinus and a sooty albatross of the genus Phoebetria . Small populations of these, and perhaps other undetected species as well, may still survive in inaccessible places.     

Subchondral Bone Apparent Density and Locomotor Behavior in Extant Primates and Subfossil Lemurs <Emphasis Type="Italic">Hadropithecus</Emphasis> and <Emphasis Type="Italic">Pachylemur</Emphasis>

We analyze patterns of subchondral bone apparent density in the distal femur of extant primates to reconstruct differences in knee posture, discriminate among extant species with different locomotor preferences, and investigate the knee postures used by subfossil lemur species Hadropithecus stenognathus and Pachylemur insignis. We obtained computed tomographic scans for 164 femora belonging to 39 primate species. We grouped species by locomotor preference into knuckle-walking, arboreal quadruped, terrestrial quadruped, quadrupedal leaper, suspensory and vertical clinging, and leaping categories. We reconstructed knee posture using an experimentally validated procedure of determining the anterior extent of the region of maximal subchondral bone apparent density on a median slice through the medial femoral condyle. We compared subchondral apparent density magnitudes between subfossil and extant specimens to ensure that fossils did not display substantial mineralization or degradation. Subfossil and extant specimens were found to have similar magnitudes of subchondral apparent density, thereby permitting comparisons of the density patterns. We observed significant differences in the position of maximum subchondral apparent density between leaping and nonleaping extant primates, with leaping primates appearing to use much more flexed knee postures than nonleaping species. The anterior placement of the regions of maximum subchondral bone apparent density in the subfossil specimens of Hadropithecus and Pachylemur suggests that both species differed from leaping primates and included in their broad range of knee postures rather extended postures. For Hadropithecus, this result is consistent with other evidence for terrestrial locomotion. Pachylemur, reconstructed on the basis of other evidence as a committed arboreal quadruped, likely employed extended knee postures in other activities such as hindlimb suspension, in addition to occasional terrestrial locomotion.     

Nouvelles espèces subfossiles de rongeurs du Nord-Ouest de Madagascar

Since the mid-19th century, the Malagasy subfossil macrofauna has been the object of numerous studies and publications, contrary to the microfauna. New fieldwork, initiated in 2001, in the North West of Madagascar (Province of Mahajanga) led to the discovery of sites rich in fossiliferous breccias, containing micromammals. In this article, we describe two new subfossil species of rodent: Brachytarsomys mahajambaensis, the smallest within the genus and Nesomys narindaensis, the largest within the genus. Most of the extant species of these two genera live in the tropical rainforests of the eastern and north-eastern areas of Madagascar, far away from the north-western part of the island where a dry deciduous forest occurs. The presence of the two taxa in the subfossil record in the Northwest of the country suggests the occurrence of wetter conditions in the past in this region.     

G1m(1) and G1m(2) allotypes in Albanian towns of Calabria

The G1m(1) and G1m(2) allotype distribution was analyzed in a population sample from 11 Albanian towns of Calabria. The unusually high frequency of the G1m(1) marker already observed in Calabria as well as the presence of the Gm(2) phenotype were shown. The Calabrian and Albanian populations were similar, but significantly different from other Italian populations.     

Karyotype structure and polymorphism peculiarities of Chironomus nuditarsis Keyl, 1961 (Diptera,Chironomidae) from natural populations of North Caucasus

The study presents data on the karyotype characteristics and features of chromosomal polymorphism of Chironomus nuditarsis Keyl, 1961 (Diptera, Chironomidae) from seven natural populations of Caucasus (Northwest, Central and East Caucasus). We found 16 banding sequences in the Caucasian populations. We observed inversion polymorphism almost in all chromosome arms except for arms C and E. The genetic distances between all the studied populations of Ch. nuditarsis were calculated using Nei criteria (1972). In spite of relative geographic proximity, the genetic distances between populations of the Caucasus are quite big, and they do not form a single cluster of Caucasian populations. The population of the Northwest Caucasus goes to European cluster; the populations of Central and East Caucasus form their own separate clusters. The principal component analysis (PCA) shows the similar picture. We suggest that such a clear separation of Caucasian populations in distinct clusters is a result of differences of collection sites in terms of geography and climate (complex diverse terrain and microclimate conditions). Four of the Caucasian populations do not follow Hardy-Weinberg expectation. In two populations, there being a marked deficiency of heterozygotes in arms B, F and G. In two other populations, there being a marked excess of heterozygotes in arms B and G. One can suggest that observed pictures could be a reflection of multi-directional selection of heterozygotes in different populations. The populations of Ch. nuditarsis from different parts of the Caucasus possibly diverged from each other at the level of subspecies. All the obtained data are indicative of the complex genetic structure of Caucasian populations of Ch. nuditarsis and total complexity of microevolution processes occurring in the Caucasus region.     

Genetic and geographic structure of an insect resistant and a susceptible type of <Emphasis Type="Italic">Barbarea vulgaris</Emphasis> in western Europe

Interactions between herbivores and plants are believed to have been important drivers of biodiversity. However, to drive an initial resistance divergence into different evolutionary lineages and taxa, these interactions have probably been embedded in other processes of divergence, like allopatric isolation. The cruciferous plant Barbarea vulgaris ssp. arcuata occurs in Denmark in two types: one (G) is resistant to most genotypes of the flea beetle Phyllotreta nemorum, the other (P) is susceptible. The two types additionally differ in hairiness and glucosinolates, they are genetically strongly divergent, and reproduction between them is reduced. To determine whether the two plant types and their resistance polymorphisms are also present outside Denmark, and to understand how they have evolved, we analysed 33 European populations of B. vulgaris for resistance, hairiness, glucosinolates, and microsatellite markers. Most populations had traits indicative of the G type, including the already characterized Danish G populations. In contrast, only two populations outside Denmark were of the P type; one from northern Sweden and one from Estonia. Genetically, the G populations formed two genetic clusters that were strongly divergent from a genetic cluster containing P populations. A fourth genetic cluster, which contained only a single population and no Danish plants, belonged morphologically to the subspecies ssp. vulgaris. The divergence found in Denmark between a resistant G and a susceptible P type is thus part of a larger divergence in Europe. Judging from the trait correlations, genetic divergence, and partial reproductive incompatibility, the plant types must have been isolated from each other for quite some time. The two P populations outside Denmark came from the north and east, suggesting a more eastern distribution. If so, resistant and susceptible types could have diverged during the ice age and later met in Scandinavia. However, more samples from Eastern Europe are needed to clarify this.     

Description of Alaeuris stehlini n. sp. and Alaeuris numidica canariensis n. ssp. (Nematoda, Pharyngodonidae), parasite of Gallotia stehlini, lacertid of Grand Canary Island (Spain)

Pharyngodonid nematodes (Oxyuroidea) belonging to the genus Alaeuris Thapar, 1925, were collected from the posterior gut of Gallotia stehlini (Lacertidae) from Grand Canary Island. Two species Alaeuris stehlini n. sp. and Alaeuris numidica canariensis n. ssp. were identified. The new species is described in which the long thin males are characterized by narrow caudal alae, a rounded first pair of adanal papillae non pedunculate, the second pair attached and elongate, the three pair teated; a short narrow V plate and a relatively long caudal appendage. The females are also long and thin with a slightly salient vulva, a conical pointed caudal appendage, oesophageal length approximately one third of body, excretory pore below the oesophageal bulb. The new subspecies most closely resembles Alaeuris numidica numidica. (Seurat, 1918) Petter, 1966 and Alaeuris numidica madagascariensis Petter, 1966.     

DNA content and distribution in ancient feathers and potential to reconstruct the plumage of extinct avian taxa

Feathers are known to contain amplifiable DNA at their base (calamus) and have provided an important genetic source from museum specimens. However, feathers in subfossil deposits generally only preserve the upper shaft and feather ‘vane’ which are thought to be unsuitable for DNA analysis. We analyse subfossil moa feathers from Holocene New Zealand rockshelter sites and demonstrate that both ancient DNA and plumage information can be recovered from their upper portion, allowing species identification and a means to reconstruct the appearance of extinct taxa. These ancient DNA sequences indicate that the distal portions of feathers are an untapped resource for studies of museum, palaeontological and modern specimens. We investigate the potential to reconstruct the plumage of pre-historically extinct avian taxa using subfossil remains, rather than assuming morphological uniformity with closely related extant taxa. To test the notion of colour persistence in subfossil feathers, we perform digital comparisons of feathers of the red-crowned parakeet (Cyanoramphus novaezelandiae novaezelandiae) excavated from the same horizons as the moa feathers, with modern samples. The results suggest that the coloration of the moa feathers is authentic, and computer software is used to perform plumage reconstructions of moa based on subfossil remains.     

Region‐wide and ecotype‐specific differences in demographic histories of threespine stickleback populations,estimated from whole genome sequences

We analysed 81 whole genome sequences of threespine sticklebacks from Pacific North America, Greenland and Northern Europe, representing 16 populations. Principal component analysis of nuclear SNPs grouped populations according to geographical location, with Pacific populations being more divergent from each other relative to European and Greenlandic populations. Analysis of mitogenome sequences showed Northern European populations to represent a single phylogeographical lineage, whereas Greenlandic and particularly Pacific populations showed admixture between lineages. We estimated demographic history using a genomewide coalescence with recombination approach. The Pacific populations showed gradual population expansion starting >100 Kya, possibly reflecting persistence in cryptic refuges near the present distributional range, although we do not rule out possible influence of ancient admixture. Sharp population declines ca. 14–15 Kya were suggested to reflect founding of freshwater populations by marine ancestors. In Greenland and Northern Europe, demographic expansion started ca. 20–25 Kya coinciding with the end of the Last Glacial Maximum. In both regions, marine and freshwater populations started to show different demographic trajectories ca. 8–9 Kya, suggesting that this was the time of recolonization. In Northern Europe, this estimate was surprisingly late, but found support in subfossil evidence for presence of several freshwater fish species but not sticklebacks 12 Kya. The results demonstrate distinctly different demographic histories across geographical regions with potential consequences for adaptive processes. They also provide empirical support for previous assumptions about freshwater populations being founded independently from large, coherent marine populations, a key element in the Transporter Hypothesis invoked to explain the widespread occurrence of parallel evolution across freshwater stickleback populations.     

Dendrochronological evidence of cockchafer (Melolontha sp.) outbreaks in subfossil tree-trunks from Tovačov (CZ Moravia)

In dendrochronological dating, we encounter the trouble that some samples cannot be dated due to the occurrence of anomalies in the tree-ring series. When dating subfossil wood for the extension of existing master chronologies, this may be an especially unwanted circumstance as subfossil wood is scarce and each sample is valuable. In Moravia (Czech Republic) outbreaks of the cockchafer (Melolontha sp.) used to appear with a disastrous effect on agricultural crops, and, for a dendrochronologist, on samples of wood to be dated. Oak ring width reduction caused by cockchafer induced defoliation can superimpose climate induced growth variations and may complicate dating of historical or subfossil samples. For this study, 33 samples of sub-fossil trunks were assessed; 19 of which were attacked by cockchafer. For comparison, we analysed a total of nine living oak trees from the forest district Strá?nice-Vracov, recently attacked by the cockchafer. Occurrence of the cockchafer was reported there in 1999, 2003 and 2007.We found clear growth patterns with cyclic narrow rings every 4 years. This allowed us to create an artificial curve expressing the recurring cycles of cockchafer outbreaks which assisted us in the detection of the same pattern in subfossil tree growth. The tree-ring series of the attacked living oak stand as well as the 19 individual tree-ring series from subfossil oak trunks could not be dated using standard chronologies and showed a high resemblance to the cockchafer life cycle. Additionally, we found out that the living oak stand was attacked in 1983, 1987, 1991 and 1995 as well. The results support the hypothesis that the periodical reduction observed in tree-rings at regular increments is caused by cockchafer infestation. This evidence is further supported by characteristic anatomical features in early wood. A mean tree-ring series was created from the individual tree-ring series of subfossil oaks even though radiocarbon dating showed completely different ages of samples. This means that the affected tree-ring series cannot be used for dendrochronological dating and dendroclimatological analyses. These series cannot be used without preceding mathematical and statistical modification.     

Tempo and mode of evolutionary divergence in modern and Holocene Vancouver Island marmots (Marmota vancouverensis) (Mammalia, Rodentia)

Marmota vancouverensis is the only insular species among the 14 species of marmots. The evolutionary history of this species is unresolved. Although M. vancouverensis is strongly differentiated in osteological and other morphological characters, its low genetic divergence suggests recent evolution from an ancestral continental species. We used geometric morphometric techniques to assess the morphology of hemimandibles from 239 modern M. vancouverensis , Marmota caligata , Marmota flaviventris , Marmota olympus and 30 Holocene (9435–735 cal. yr bp) subfossil M. vancouverensis . Our results confirm that the mandible of M. vancouverensis is strongly differentiated in shape from continental marmot species, but similar in size to its mainland sister species M. caligata . Temporal variation in size and shape over the past 2500 years among allochronic samples of M. vancouverensis was minimal suggesting that the morphological divergence of this species occurred in a period of rapid change following its isolation from mainland populations in the late Pleistocene. Selection pressures associated with environmental changes and founder effects and genetic drift resulting from population bottlenecks created by population declines and habitat fragmentation are hypothesized as factors contributing to the morphological divergence of this species.