Non-selectivity in extinction of bivalves in the Late Cretaceous of the Atlantic and Gulf Coastal Plain of North America

It has been suggested that the biogeographic and clade-level characteristics of marine invertebrate groups important in survival through mass extinctions are different from those important in survival during normal times. The role played by ecologically important characters in survival across mass extinctions, however, has not been well-studied. We obtained information from the literature about the feeding mode and morphology, burrowing habits, size and depth below sea-level inhabited, temperature range, shell thickness, species richness and abundance of bivalve genera present in the Late Cretaceous of the Atlantic and Gulf Coastal Plain of North America. Non-parametric analysis revealed that there were no significant associations between any of these characteristics and survival across the Cretaceous-Tertiary boundary. This lack of selectivity may be due to varying local conditions, which favor different ecological characteristics in each area and produce no overall pattern of selectivity. It might also be indicative of the severity of this extinction on bivalves — differences in ecological habits may have been virtually irrelevant to survivorship through this event.     

Phylogenetic relationships among the Notharctinae of North America

Study of over 1,000 specimens representing all notharctine genera and species leads to the conclusion that current concepts about the relationships of genera within the Notharctinae are incorrect. The following describes the more probable relationships among these genera. 1) Smilodectes and Notharctus are more closely related to each other than either is to any known early Eocene notharctine. Synapomorphies linking these genera include relatively narrow upper and lower molars, a relatively low-crowned P4, and paraconid size reduction on M1-3. 2) Among known Wasatchian notharctines, a clade consisting of Copelemur tutus and Cop. praetutus shares several lower molar synapomorphies with the Notharctus-Smilodectes clade, and therefore appears to form the Wasatchian sister group of Bridgerian notharctines. Synapomorphies documenting this relationship include well-developed entoconid notches on P4-M2, an anteriorly placed paraconid on M2, and a long premetacristid on M2. 3) Copelemur and Pelycodus are independently derived from early North American Cantius. Recent suggestions that the European adapine taxa Leptadapis priscus and Microadapis sciureus share special phylogenetic relationships with Smilodectes are rejected. The reduced (or lack of a) paraconid and morphology of the paracristid and other features identified as synapomorphies linking these adapines with Smilodectes are also characteristic of most other adapines as well (e.g., other species of Leptadapis, Adapis, Europolemur, and Anchomomys). Such traits developed independently in Smilodectes, which is clearly a notharctine on the basis of many synapomorphies and thus are not evidence of a close phylogenetic relationship between Smilodectes and L. priscus or M. sciureus.     

The shrinking ark: patterns of large mammal extinctions in India

Mammal extinctions are widespread globally, with South Asian species being most threatened. We examine local extinctions of 25 mammals in India. We use historical records to obtain a set of locations at which each species was known to have been present at some time in the last 200 years. We then use occupancy estimation models to draw inferences about current presence at these same locations based on field observations of local experts. We examine predictions about the influence of key factors such as protected areas, forest cover, elevation, human population density and cultural tolerance on species extinction. For all 25 species, estimated local extinction probabilities (referenced to a 100 year time frame) range between 0.14 and 0.96. Time elapsed since the historical occurrence record was an important determinant of extinction probability for 14 species. Protected areas are positively associated with lower extinction of 18 species, although many species occur outside them. We find evidence that higher proportion of forest cover is associated with lower extinction probabilities for seven species. However, for species that prefer open habitats (which have experienced intensive land-use change), forest cover alone appears insufficient to ensure persistence (the complement of extinction). We find that higher altitude is positively associated with lower extinction for eight species. Human population density is positively associated with extinction of 13 species. We find that ‘culturally tolerated’ species do exhibit higher persistence. Overall, large-bodied, rare and habitat specialist mammals tend to have higher extinction probabilities.     

High variability in patterns of population decline: the importance of local processes in species extinctions

A fundamental goal of conservation science is to improve conservation practice. Understanding species extinction patterns has been a central approach towards this objective. However, uncertainty remains about the extent to which species-level patterns reliably indicate population phenomena at the scale of local sites, where conservation ultimately takes place. Here, we explore the importance of both species- and site-specific components of variation in local population declines following habitat disturbance, and test a suite of hypotheses about their intrinsic and extrinsic drivers. To achieve these goals, we analyse an unusually detailed global dataset for species responses to habitat disturbance, namely primates in timber extraction systems, using cross-classified generalized linear mixed models. We show that while there are consistent differences in the severity of local population decline between species, an equal amount of variation also occurs between sites. The tests of our hypotheses further indicate that a combination of biological traits at the species level, and environmental factors at the site level, can help to explain these patterns. Specifically, primate populations show a more marked decline when the species is characterized by slow reproduction, high ecological requirements, low ecological flexibility and small body size; and when the local environment has had less time for recovery following disturbance. Our results demonstrate that individual species show a highly heterogeneous, yet explicable, pattern of decline. The increased recognition and elucidation of local-scale processes in species declines will improve our ability to conserve biodiversity in the future.     

Bryozoan provinces and patterns of generic evolution and extinction in the Late Ordovician of North America

The Late Ordovician bryozoan genera of central and southeastern North America are geographically distributed in three biotic provinces, separated by boundaries reflecting major lithofacies differences. The central Cincinnati Province contains most of the North American endemic genera, and represents a narrow ecological zone separating the clastic wedges of the marginal Reedsville-Lorraine Province from the cratonic carbonate platform of the Red River-Stony Mountain Province. The provinces provided major life zones, or biomes, for each of the five bryozoan orders. Genera comprising the provinces differed as well in morphologic complexity, geochronologic survivorship, tiering, endemism and eurytopy. Regions on either side of the Cincinnati Province were dominated by inferred immigrants from Baltoscandia. Al-logenic provincial succession produced time-averaged mixed faunas in regions near the provincial boundaries. Although most generic originations took place within the Cincinnati Province, evolutionary novelties are associated with the Reedsville-Lorraine Province. The loss of the diverse Cincinnati Province, connected with global cooling and a eustatic lowering of sea level, may have been a chief factor in the Late Ordovician extinction of bryozoan genera. Genera from the Red River-Stony Mountain Province differentially survived into the Silurian.     

Dispersed cuticles from the Eocene of North America

KOVACH, W. L. & DILCHER, D. L., 1984. Dispersed cuticles from the Eocene of North America. Macerations of organic-rich clay from the Claiborne Formation (Middle Eocene) of Tennessee have yielded a wide variety of well-preserved dispersed cuticles. Details of the epidermal cell patterns, arrangement of the stomata1 complex, trichomes and trichome attachment have made possible the association of some dispersed cuticles with leaf types known from this formation which have similar cuticle, and with modern families. All dispersed cuticles are classified in a morphologic system. Through both our own work and a review of previous investigations we have found that distinct dispersed cuticle types can be recognized and may be used biostratigraphically to characterize geologic strata, palaeo-ecologically to provide insights into environmental reconstruction, and systematically to follow the history of certain taxa.     

Scolecophidia (Serpentes) of the Late Oligocene and Early Miocene,North America,and a fossil history overview

An abundant fossil record of the snake clade Scolecophidia exists in Europe; however, the minute snake is noticeably absent in reports about the North American Paleogene and Neogene. Presented here are four localities from Florida, USA, that contain scolecophidian remains older than the Pleistocene: Thomas Farm (late Early Miocene, Hemingfordian Land Mammal Age, LMA), Live Oak (Oligocene-Miocene transition, latest Arikareean LMA), White Springs 3B (late Arikareean LMA), and Brooksville 2 (Late Oligocene, middle Arikareean LMA). These remains extend their known existence by about 26 m.y. and are now the oldest reported scolecophidian remains in North America. Molecular evidence on extant scolecophidians concludes that these tiny snakes have a Gondwanan origin. Interestingly, the oldest record of a scolecophidian is from Europe (Belgium) and dates back to the middle Paleocene (MP 1–5). The earliest African record of the snake clade comes from the Paleocene-Eocene boundary in Morocco. The clade is apparently absent from Europe and Middle East deposits dating from the latest Eocene through to the latest Oligocene (MP 19–30) and to the Early Miocene (MN 4). A portion of this time is known as the booid ‘Dark Period’ which represents an apparent response to global aridization and cooling. Scolecophidians appear to re-emerge into the southern Eurasian record in the Early Miocene (MN 4) and become widely dispersed throughout Europe and Middle East. The fossil record of these minute snakes is largely absent in southern Asia and South America. It is possible that the current lack of a decent fossil scolecophidian record outside of Europe and Middle East is due mainly to a bias in the methodology to recover fossils; wet sieving sediments through < 1.0 mm mesh is needed to recover the minuscule vertebrae.     

Fossil angiosperm wood: its role in the reconstruction of biodiversity and palaeoenvironment

Fossil wood is subject to different taphonomic, sampling and recognition biases in the palaeobotanical record when compared with leaves and palynomorphs. Wood therefore provides a systematically independent source of information that can increase our knowledge of past biodiversity and environments. Increase in fossil wood records from Cretaceous and Tertiary sediments helps further the understanding of trends in anatomical specialization through geological time. These data can then be used to distinguish such specialization from anatomical response to environmental change. Two case studies, a Late Cretaceous early Tertian' wood flora from Antarctica and a lower Tertiary w ood flora from southern England, have been used to exemplify the importance of studying the fossil wood component of palaeofloras.     

Asymmetric larval interactions between introduced and indigenous ladybirds in North America

Understanding the mechanisms that result in the success of introduced species will contribute to predicting future invasions and managing invaded systems. We examined interactions between larvae of two predatory ladybird species recently introduced to North America, Coccinella septempunctata (CS) and Harmonia axyridis (HA), and two indigenous ladybirds, Coccinella transversoguttata (CT) and Hippodamia convergens (HC). By pairing young and old larvae in the laboratory at low and high levels of aphid availability, we assessed the degree of asymmetry in intraguild predation (IGP), the strength of competitive effects on growth and development of larvae escaping predation, and the nature of attack and escape behavior among the species. Interactions were generally asymmetric, with larvae of introduced species acting most frequently as intraguild predators and larvae of indigenous species serving most frequently as intraguild prey (the two Coccinella spp., however, preyed on each other at similar rates). Because they were especially aggressive and because other larvae were least successful in escaping their attacks, larvae of HA had stronger negative effects on larvae of the two indigenous species than did larvae of CS. Such negative effects, expressed most strongly when aphid availability was low, were especially adverse for the smaller of the two indigenous species, HC. In general, older larvae interacted with each other more strongly than young larvae did, and older larvae had especially strong negative effects on young larvae when interactions occurred between age classes. Our results suggest that HA more than CS may represent a threat to indigenous ladybirds as an intraguild predator, and that IGP in turn may play a stronger role for HA than for C. septempunctata in promoting the successful invasion of North America.     

Uncertainty in identifying local extinctions: the distribution of missing data and its effects on biodiversity measures

Identifying local extinctions is integral to estimating species richness and geographic range changes and informing extinction risk assessments. However, the species occurrence records underpinning these estimates are frequently compromised by a lack of recorded species absences making it impossible to distinguish between local extinction and lack of survey effort—for a rigorously compiled database of European and Asian Galliformes, approximately 40% of half-degree cells contain records from before but not after 1980. We investigate the distribution of these cells, finding differences between the Palaearctic (forests, low mean human influence index (HII), outside protected areas (PAs)) and Indo-Malaya (grassland, high mean HII, outside PAs). Such cells also occur more in less peaceful countries. We show that different interpretations of these cells can lead to large over/under-estimations of species richness and extent of occurrences, potentially misleading prioritization and extinction risk assessment schemes. To avoid mistakes, local extinctions inferred from sightings records need to account for the history of survey effort in a locality.     

The effect of calcium concentration on the crushing resistance, weight and size of Biomphalaria sudanica (Gastropoda: Planorbidae)

Biomphalaria sudanica (intermediate host of Schistosoma mansoni) were raised in the laboratory in media with seven different calcium concentrations ranging from 0.02 to 2.0 mmol/l. After 10 weeks, snails were killed and shell diameter, inorganic dry weight, ash free dry weight and crushing resistance were measured. Snails raised at lower calcium concentrations were found to be significantly smaller than snails raised at higher concentrations. Furthermore, relatively thinner shells were developed at low concentrations and crushing resistance relative to snail size was found to be lower for these snails. The ratio between crushing resistance and ash free dry weight (as a measure for the energetic cost/benefit-ratio) was also found to be correlated with calcium concentration. The relevance of the results for predation risk of B. sudanica is discussed.     

Impending extinctions of North American freshwater mussels (Unionoida) following the zebra mussel (Dreissena polymorpha) invasion

1. Freshwater mussels (Order Unionoida) are the most imperiled faunal group in North America; 60% of described species are considered endangered or threatened, and 12% are presumed extinct. Widespread habitat degradation (including pollution, siltation, river channelization and impoundment) has been the primary cause of extinction during this century, but a new stress was added in the last decade by the introduction of the Eurasian zebra mussel, Dreissena polymorpha , a biofouling organism that smothers the shells of other molluscs and competes with other suspension feeders for food. Since the early 1990s, it has been spreading throughout the Mississippi River basin, which contains the largest number of endemic freshwater mussels in the world. In this report, we use an exponential decay model based on data from other invaded habitats to predict the long-term impact of D. polymorpha on mussel species richness in the basin.
2. In North American lakes and rivers that support high densities (>3000 m⁻²) of D. polymorpha , native mussel populations are extirpated within 4–8 years following invasion. Significant local declines in native mussel populations in the Illinois and Ohio rivers, concomitant with the establishment of dense populations of D. polymorpha , suggest that induced mortality is occurring in the Mississippi River basin.
3. A comparison of species loss at various sites before and after invasion indicates that D. polymorpha has accelerated regional extinction rates of North American freshwater mussels by 10-fold. If this trend persists, the regional extinction rate for Mississippi basin species will be 12% per decade. Over 60 endemic mussels in the Mississippi River basin are threatened with global extinction by the combined impacts of the D. polymorpha invasion and environmental degradation.     

A primitive nimravine skull from the Quercy fissures, France: implications for the origin and evolution of Nimravidae (Carnivora)

A carnivore skull from the Phosphorites of Quercy, France, is described herein. Its well-preserved basicranial structure, cat-like morphology, and dental reduction support the assignment of this specimen to the Nimravidae. This is the most primitive nimravid described and its overall morphology is the closest yet to the hypothetical ancestor of the Nimravinae as previously conceived. In addition, the monophyly of the Nimravinae is reinforced by the similar basicranium of the specimen described here compared to other nimravid genera. It suggests that this typical basicranial structure appeared well ahead the sabretooth features in this group. The early evolution and diversification of the Nimravinae occurred during the Late Eocene in the northern hemisphere but the precise geographic area is still unknown. A rapid evolution during the initial radiation of the group or an incomplete fossil record in Eurasia could both equally explain the rapid and worldwide distribution of the Nimravinae.     

Ecological fidelity of open marine molluscan death assemblages: effects of post-mortem transportation, shelf health, and taphonomic inertia

Based on 38 molluscan datasets from modern open shelf settings, disturbance from human activities – especially anthropogenic eutrophication (AE) – has the strongest negative effect on the fidelity of death assemblages to local living communities, suggesting that the composition of the death assemblage has lagged behind changes in the living community (taphonomic inertia). Fidelity is poorest where shelves are both AE and narrow (≤ 50 km from shore to the 200-m isobath), suggesting that cross-shelf post-mortem transportation might contribute bias, but this does not dominate and shelf width does not emerge as significant among non-AE shelves. Clear signatures of post-mortem transportation are present only in four shoreface datasets, all from wide shelves, that receive abundant allochthonous specimens from adjacent estuaries or rocky intertidal zones.
Shelves experiencing minimal human impact yield fidelity estimates that are most relevant for evaluating (paleo)ecological trends. There, death assemblages are on average 25% richer than a single census of the living molluscan community and show high similarity in taxonomic composition and species relative abundance that, based on a very limited number of studies, is comparable to or better than the agreement found among successive live censuses. Molluscan death assemblages on open shelves are thus generally good samplers of living community diversity and composition under natural conditions, and where the community is undergoing anthropogenic modification, retain a strong record of the precursor community. Taphonomic inertia will be strongest where the change in the community has been especially strong (outside the normal range of natural variability) and/or where the 'new' community has lower net rates of shell input than its precursor, so that input only slowly dilutes the time-averaged skeletal remains of the 'old' community.     

Mouthparts of the Burgess Shale fossils Odontogriphus and Wiwaxia: implications for the ancestral molluscan radula

The Middle Cambrian lophotrochozoans Odontogriphus omalus and Wiwaxia corrugata have been interpreted as stem-group members of either the Mollusca, the Annelida, or a group containing Mollusca + Annelida. The case for each classification rests on the organisms' unusual mouthparts, whose two to three tooth-rows resemble both the molluscan radula and the jaws of certain annelid worms. Despite their potential significance, these mouthparts have not previously been described in detail. This study examined the feeding apparatuses of over 300 specimens from the 505-million-year-old Burgess Shale, many of which were studied for the first time. Rather than denticulate plates, each tooth row comprises a single axial tooth that is flanked on each side by eight to 16 separate shoehorn-shaped teeth. Tooth rows sat on a grooved basal tongue, and two large lobes flanked the apparatus. New observations-the shape, distribution and articulation of the individual teeth, and the mouthparts' mode of growth-are incompatible with an annelid interpretation, instead supporting a classification in Mollusca. The ancestral molluscan radula is best reconstructed as unipartite with a symmetrical medial tooth, and Odontogriphus and Wiwaxia as grazing deposit-feeders.     

Evolution of nocturnality in bats: Potential competitors and predators during their early history

Despite their taxonomic and ecological diversity, modern bats (Order Chiroptera) are almost exclusively nocturnal. This behaviour is too ubiquitous to be explained by common patterns of temporal variation in availability of their diverse food sources or by the risk of hyperthermia when flying during the day. Other explanations for bat nocturnality include competition and increased predation risk from birds during the day. In the early and mid Eocene, the known bat fauna consisted of several insectivorous species of sizes similar to those of the modern European assemblage. This fauna was contemporaneous with several species of predatory birds, including owls (Strigiformes), hawks (Accipitridae), falcons (Falconidae) and rollers (Coraciiformes), which were the same size as modern predators on bats. Predation risk could therefore have been a significant factor preventing the early bats from becoming diurnal. Competition from aerial insectivorous birds, however, was less likely to have been significant for bats during the early Eocene, since very few such groups, mainly small Aegialornithidae, were present, with most of the major groups of aerial insectivores evolving later.     

Periodic extinctions of transposable elements in bacterial lineages: evidence from intragenomic variation in multiple genomes

Most previous work on the evolution of mobile DNA was limited by incomplete sequence information. Whole genome sequences allow us to overcome this limitation. I study the nucleotide diversity of prominent members of five insertion sequence families whose transposition activity is encoded by a single transposase gene. Eighteen among 376 completely sequenced bacterial genomes and plasmids carry between 3 and 20 copies of a given insertion sequence. I show that these copies generally show very low DNA divergence. Specifically, more than 68% of the transposase genes are identical within a genome. The average number of amino acid replacement substitutions at amino acid replacement sites is Ka = 0.013, that at silent sites is Ks = 0.1. This low intragenomic diversity stands in stark contrast to a much higher divergence of the same insertion sequences among distantly related genomes. Gene conversion among protein-coding genes is unlikely to account for this lack of diversity. The relation between transposition frequencies and silent substitution rates suggests that most insertion sequences in a typical genome are evolutionarily young and have been recently acquired. They may undergo periodic extinction in bacterial lineages. By implication, they are detrimental to their host in the long run. This is also suggested by the highly skewed and patchy distribution of insertion sequences among genomes. In sum, one can think of insertion sequences as slow-acting infectious diseases of cell lineages.     

Invasion genetics of the Eurasian round goby in North America: tracing sources and spread patterns

The Eurasian round goby Neogobius melanostomus ( Apollonia melanostoma ) invaded the North American Great Lakes in 1990 through ballast water, spread rapidly, and now is widely distributed and moving through adjacent tributaries. We analyse its genetic diversity and divergence patterns among 25 North American ( N  = 744) and 22 Eurasian ( N  = 414) locations using mitochondrial DNA cytochrome b gene sequences and seven nuclear microsatellite loci in order to: (i) identify the invasion's founding source(s), (ii) test for founder effects, (iii) evaluate whether the invasive range is genetically heterogeneous, and (iv) determine whether fringe and central areas differ in genetic diversity. Tests include F _ST analogues, neighbour-joining trees, haplotype networks, Bayesian assignment, Monmonier barrier analysis, and three-dimensional factorial correspondence analysis. We recovered 13 cytochrome b haplotypes and 232 microsatellite alleles in North America and compared these to variation we previously described across Eurasia. Results show: (i) the southern Dnieper River population was the primary Eurasian donor source for the round goby's invasion of North America, likely supplemented by some alleles from the Dniester and Southern Bug rivers, (ii) the overall invasion has high genetic diversity and experienced no founder effect, (iii) there is significant genetic structuring across North America, and (iv) some expansion areas show reduced numbers of alleles, whereas others appear to reflect secondary colonization. Sampling sites in Lake Huron's Saginaw Bay and Lake Ontario significantly differ from all others, having unique alleles that apparently originated from separate introductions. Substantial genetic variation, multiple founding sources, large number of propagules, and population structure thus likely aided the goby's ecological success.     

Biogeographic patterns in scaled chrysophytes from the east coast of North America

1. We assessed the distribution of scaled chrysophytes in fresh waters along 3200 km of the east coast of North America (29° to 48°N) to determine any biogeographic patterns in relation to chemical, physical, climatic and spatial variables. 2. Scaled chrysophytes were identified using scanning electron microscopy and counted from 264 waterbodies in nine regions (20 subregions). Eighteen chemical, physical and climate variables were determined for each waterbody. We used Sorensen’s similarity index and analysis of similarity (ANOSIM) to evaluate whether the floras differed between regions, subregions, glaciated and non‐glaciated areas, as well as within sets of waterbodies with similar chemical and physical characteristics but situated in different regions. Distance‐based linear modelling (DISTLM) was used to evaluate the relative importance of the chemical, physical and climate factors in explaining the variability in the assemblages of scaled chrysophytes, and the resulting models were visualised using redundancy analysis (RDA). 3. Significant differences in the flora were found between all regions and most subregions, and between glaciated and non‐glaciated areas. Significant differences were also recorded between waterbodies with similar chemical and physical characteristics but situated in different regions. Many species were abundant along specific sections of the latitudinal gradient, but lacking from others. A set of environmental variables explained significant and independent portions of the variation in scaled chrysophytes, with pH and mean minimum July temperature accounting for 20% of the total. 4. The distribution of scaled chrysophytes along the east coast of North America is not homogeneous and there are biogeographic patterns, despite apparent dispersal mechanisms (migratory birds and wind events) that might act to reduce differences between regions. Rather, differences exist even between neighbouring subregions containing sites with statistically similar chemical and physical attributes. Environmental variables clearly play a significant role in determining whether species will inhabit a given site. However, species were not always found in waterbodies likely to support growth, implicating inadequate dispersal, poor transportability or both.