Amino acid contacts in proteins adapted to different temperatures: hydrophobic interactions and surface charges play a key role

Thermophiles, mesophiles, and psychrophiles have different amino acid frequencies in their proteins, probably because of the way the species adapt to very different temperatures in their environment. In this paper, we analyse how contacts between sidechains vary between homologous proteins from species that are adapted to different temperatures, but displaying relatively high sequence similarity. We investigate whether specific contacts between amino acids sidechains is a key factor in thermostabilisation in proteins. The dataset was divided into two subsets with optimal growth temperatures from 0–40 and 35–102°C. Comparison of homologues was made between low-temperature species and high-temperature species within each subset. We found that unspecific interactions like hydrophobic interactions in the core and solvent interactions and entropic effects at the surface, appear to be more important factors than specific contact types like salt bridges and aromatic clusters. Electronic supplementary material  The online version of this article (doi:) contains supplementary material, which is available to authorized users.     

Some like it cold: understanding the survival strategies of psychrophiles

Much of the Earth's surface, both marine and terrestrial, is either periodically or permanently cold. Although habitats that are largely or continuously frozen are generally considered to be inhospitable to life, psychrophilic organisms have managed to survive in these environments. This is attributed to their innate adaptive capacity to cope with cold and its associated stresses. Here, we review the various environmental, physiological and molecular adaptations that psychrophilic microorganisms use to thrive under adverse conditions. We also discuss the impact of modern “omic” technologies in developing an improved understanding of these adaptations, highlighting recent work in this growing field.     

Promiscuity, stability and cold adaptation of a newly isolated acylaminoacyl peptidase

We report on the characterisation of a member of the acylaminoacyl peptidase family, the first isolated from bacteria. The enzyme was obtained from the psychrophilic bacterium Sporosarcina psychrophila and shows the typical features of cold adaptation (low T_m, optimal temperature of 40 °C, poor thermal stability). It was also tested for substrate specificity, effect of metals, temperature dependence and structure stability and revealed promiscuous catalytic activity on at least two chemically distinct substrates, with k_cat/K_m values for ester hydrolysis and acylamino acids cleavage of 1.7 × 10⁴ s⁻¹ M⁻¹ and 6.2 × 10³ s⁻¹ M⁻¹, respectively. Despite some properties cannot be explained with current models, results report on the relevance of structural and catalytic properties for the successful adaptation to cold temperatures.     

Some like it hot and some like it cold,but not too much: plant responses to climate extremes

Current climatic models predict increasing frequency and magnitude of extreme climatic events (ECEs). Ecological studies recognize the importance of these extremes as drivers of plant growth and mortality, as well as drivers of ecological and evolutionary processes. Here we review observational and experimental studies on ECEs on herbaceous plants and shrubs. Extreme events considered were heat waves, drought, advanced or delayed snowmelt, heavy rainfalls, frosts, pulsed watering and flooding. We analysed 39 studies dealing with direct response of plant to ECEs in different ecosystems, with a particular focus on cold ecosystems (alpine and arctic). Although the number of studies increases every year, the understanding of ecological consequences of ECEs is fragmentary. In general, ECEs affected negatively on physiological processes (efficiency of photosystem II, stomatal conductance and leaf water potential), productivity and reproduction, and had consequences on population demography and recruitment several years after ECE. Indeed, the plant responses to ECEs were species specific and depended on the plant life stage and the timing of ECE. In fact, the magnitude of the effect of ECEs decreased over the growing season. Drought had the most severe effect on plants, while heat waves had minor effect if water was available. The overlap of different ECEs had an additive effect (e.g. drought associated to heat-waves). In general, both neutral or positive plant responses were found and acclimation is possible. In some cases, ECEs exert a strong selective pressure on plant species.     

Some like it cold: Temperature‐dependent habitat selection by narwhals

The narwhal (Monodon monoceros) is a high‐Arctic species inhabiting areas that are experiencing increases in sea temperatures, which together with reduction in sea ice are expected to modify the niches of several Arctic marine apex predators. The Scoresby Sound fjord complex in East Greenland is the summer residence for an isolated population of narwhals. The movements of 12 whales instrumented with Fastloc‐GPS transmitters were studied during summer in Scoresby Sound and at their offshore winter ground in 2017–2019. An additional four narwhals provided detailed hydrographic profiles on both summer and winter grounds. Data on diving of the whales were obtained from 20 satellite‐linked time‐depth recorders and 16 Acousonde? recorders that also provided information on the temperature and depth of buzzes. In summer, the foraging whales targeted depths between 300 and 850 m where the preferred areas visited by the whales had temperatures ranging between 0.6 and 1.5°C (mean = 1.1°C, SD = 0.22). The highest probability of buzzing activity during summer was at a temperature of 0.7°C and at depths > 300 m. The whales targeted similar depths at their offshore winter ground where the temperature was slightly higher (range: 0.7–1.7°C, mean = 1.3°C, SD = 0.29). Both the probability of buzzing events and the spatial distribution of the whales in both seasons demonstrated a preferential selection of cold water. This was particularly pronounced in winter where cold coastal water was selected and warm Atlantic water farther offshore was avoided. It is unknown if the small temperature niche of whales while feeding is because prey is concentrated at these temperature gradients and is easier to capture at low temperatures, or because there are limitations in the thermoregulation of the whales. In any case, the small niche requirements together with their strong site fidelity emphasize the sensitivity of narwhals to changes in the thermal characteristics of their habitats.     

Protein adaptation to low temperatures: a comparative study of α-tubulin sequences in mesophilic and psychrophilic algae

The α-tubulin genes from two psychrophilic algae belonging to the genus Chloromonas (here named ANT1 and ANT3) have been isolated and sequenced. The genes ant1 and ant3 contain 4 and 2 introns, respectively. The coding DNA sequences are 90% identical but the degree of isology is very high at the polypeptide level (more than 97% strict identities). The ANT1 and ANT3 α-tubulin amino acid sequences were compared to the corresponding sequence of the mesophilic alga Chlamydomonas reinhardtii. Of the 15 substitutions detected in ANT1 and/or ANT3, 5 are common to both psychrophilic algae. The recorded substitutions have been analyzed in terms of cold adaptation on the basis of the available three-dimensional structure of the α,β-tubulin heterodimer from pig brain. Most of these are subtle changes, but two substitutions, M268V and A295V occurring in the region of interdimer contacts, could be of great significance for the cold stability of Antarctic algae microtubules due to the fact that the entropic control of microtubule assembly is particularly high in cold adaptes species. Received: December 24, 1998 / Accepted: April 2, 1999     

Some like it cold: summer torpor by freetail bats in the Australian arid zone

Bats are among the most successful groups of Australian arid-zone mammals and, therefore, must cope with pronounced seasonal fluctuations in ambient temperature (T _a), food availability and unpredictable weather patterns. As knowledge about the energy conserving strategies in desert bats is scant, we used temperature-telemetry to quantify the thermal physiology of tree-roosting inland freetail bats (Mormopterus species 3, 8.5 g, n = 8) at Sturt National Park over two summers (2010–2012), when T _a was high and insects were relatively abundant. Torpor use and activity were affected by T _a. Bats remained normothermic on the warmest days; they employed one “morning” torpor bout on most days and typically exhibited two torpor bouts on the coolest days. Overall, animals employed torpor on 67.9 % of bat-days and torpor bout duration ranged from 0.5 to 39.3 h. At any given T _a, torpor bouts were longer in Mormopterus than in bats from temperate and subtropical habitats. Furthermore, unlike bats from other climatic regions that used only partial passive rewarming, Mormopterus aroused from torpor using either almost entirely passive (68.9 % of all arousals) or active rewarming (31.1 %). We provide the first quantitative data on torpor in a free-ranging arid-zone molossid during summer. They demonstrate that this desert bat uses torpor extensively in summer and often rewarms passively from torpor to maximise energy and water conservation.     

Some like it cold: the cellular organization and physiological limits of cold-tolerant nitrite-oxidizing Nitrotoga

Chemolithoautotrophic production of nitrate is accomplished by the polyphyletic functional group of nitrite-oxidizing bacteria (NOB). A widely distributed and important NOB clade in nitrogen removal processes at low temperatures is Nitrotoga, which however remains understudied due to the scarcity of cultivated representatives. Here, we present physiological, ultrastructural and genomic features of Nitrotoga strains from various habitats, including the first marine species enriched from an aquaculture system. Immunocytochemical analyses localized the nitrite-oxidizing enzyme machinery in the wide irregularly shaped periplasm, apparently without contact to the cytoplasmic membrane, confirming previous genomic data suggesting a soluble nature. Interestingly, in two strains we also observed multicellular complexes with a shared periplasmic space, which seem to form through incomplete cell division and might enhance fitness or survival. Physiological tests revealed differing tolerance limits towards dissolved inorganic nitrogen concentrations and confirmed the generally psychrotolerant nature of the genus. Moreover, comparative analysis of 15 Nitrotoga genomes showed, e.g. a unique gene repertoire of the marine strain that could be advantageous in its natural habitat and confirmed the lack of genes for assimilatory nitrite reduction in a strain found to require ammonium for growth. Overall, these novel insights largely broaden our knowledge of Nitrotoga and elucidate the metabolic variability, physiological limits and thus potential ecological roles of this group of nitrite oxidizers.     

Some like it hot, some like it cold: the heat shock response is found in New Zealand but not Antarctic notothenioid fishes

Previous research on Antarctic notothenioids has demonstrated that cells of cold-adapted Antarctic notothenioids lack a common cellular defense mechanism called the heat shock response (HSR), the induction of a family of heat shock proteins (Hsps) in response to elevated temperatures. The goal of this study was to address how widespread the loss of the HSR is within the Notothenioidei suborder and, specifically, to ask whether cold temperate non-Antarctic notothenioids possess the HSR. In general, Antarctic fish have provided an important opportunity for physiologists to examine responses to selection in the environment and to ask whether traits of the notothenioids represent cold adaptation, or whether the traits are related to history and are characteristics of the notothenioid lineage. Using in vivo metabolic labeling, results indicate that one of the two New Zealand notothenioids possess an HSR. The thornfish, Bovichtus variegatus Richardson, 1846, expressed heat shock proteins (Hsp) in response to heat stress, whereas the black cod, Notothenia angustata Hutton, 1875, did not display robust stress-inducible Hsp synthesis at the protein-level. However, further analysis using Northern blotting clearly demonstrated that mRNA for a common Hsp gene, hsp70, was present in cells of both New Zealand species following exposure to elevated temperatures. Overall, combined evidence on the HSR in notothenioid fishes from temperate New Zealand waters indicate that the loss of the HSR in Antarctic notothenioid fishes occurred after the separation of Bovichtidae from the other Antarctic notothenioid families, and that the HSR was most likely lost during evolution at cold and constant environmental temperatures.     

Some like it hot,some not: influence of extreme temperatures on Lariophagus distinguendus and Anisopteromalus calandrae

The parasitic wasp species Lariophagus distinguendus (Förster) (Hymenoptera: Pteromalidae) and Anisopteromalus calandrae (Howard) (Pteromalidae) are used for inoculation biological control of the granary weevil Sitophilus granarius (L.) (Coleoptera: Curculionidae) in grain stores in Europe. To assess their suitability for biological control under extreme temperatures in winter and summer, we studied the influence of temperatures on their parasitization behaviour under natural fluctuating temperature conditions in the field and under constant temperature conditions in the laboratory. At low temperatures (≤20°C), L. distinguendus showed a higher parasitization rate than A. calandrae. At high temperatures (≥25°C), A. calandrae performed better than L. distinguendus that was negatively affected already at temperatures above 30°C. These findings suggest a temperature‐dependent release of either L. distinguendus or A. calandrae to allow a more efficient application of the wasps in biological control.     

The kinetics of cellulose dissolution in sodium hydroxide solution at low temperatures

The dissolution kinetics of cellulose in sodium hydroxide in the presence and absence of urea at low temperature was studied. High molecular weight cotton linter with degree of polymerization of 850 was used for dissolution study. The cotton linter was separated from the dissolution slurry at different dissolution times, and the change of the crystal structure of cotton linter was characterized by Powder X-Ray Diffraction. The rate of decrystallization of cellulose was obtained and the activation energy for cellulose decrystallization in sodium hydroxide solution was derived using Eyring equation. The effect of urea additive was discussed.     

Anaerobic degradation pathway and kinetics of domestic wastewater at low temperatures

The effect of temperatures below 20 °C (20, 15 and 10 °C) on the anaerobic degradation pathway and kinetics of domestic wastewater fractionated at different sizes was studied in a fluidized-bed batch reactor. The overall degradation pathway was characterized by a soluble fraction degrading according to zero-order kinetics and a colloidal fraction (between 0.45 and 4.5 μm) that first disintegrates into a particulate fraction smaller than 0.45 μm before finally degrading. The colloidal degradation processes follow a first-order kinetic. In contrast, suspended solids (bigger than 4.5 μm) degrade to soluble and colloidal fractions according to first-order kinetics. The colloidal fraction originating from suspended solids further degrades into soluble fraction. These soluble fractions have the same degradation kinetics as the original soluble fraction. The suspended solids degradation was highly affected by temperature, whereas the soluble fraction slightly affected and the colloidal fraction was not affected at all. On the other hand, the colloidal non-degradable fraction increased significantly with the decrease in temperature while the suspended solids slowly increased. The soluble non-degradable fraction was little affected by temperatures changes.     

Protein synthesis at low temperatures in two soybean cultivars differing by their cold sensitivity

The effect of low temperatures (14°C/8°C, day/night) on polypeptide synthesis in leaves of two soybean ( Glycine max [L.] Merr.) cvs (Verdon and Maple Arrow) differing in cold sensitivity was investigated. The two cultivars were initially characterized in terms of cold tolerance according to their growth at the young plant stage at 14°C/8°C. Verdon was found to be more tolerant than Maple Arrow. In vivo [³⁵S]-methionine labeled polypeptides were resolved by two-dimensional electrophoresis. Autoradiograms were computer analyzed to evidence and quantify significative changes occurring after 5 days at 14°C/8°C, and to compare the response of the two cultivars. Most of the observed changes were quantitative. The two cultivars essentially exhibited a common modified polypeptide pattern in response to cold temperatures, but the changes were quantitatively more pronounced in the most tolerant cultivar. Computer analysis of two-dimensional electrophoresis gels allowed, for the first time, characterization of cultivar differences in terms of protein pattern under cold conditions.     

Characteristics of leucine transport by isolated hepatocytes of antarctic fish at low temperatures

Hepatocytes prepared by collagenase perfusion from Antarctic nototheniid fish of genus Trematomus are active in uptake of [¹⁴C]leucine at 0, 5, and 10°C. The system is saturable with apparent $\text{K}{}_{\mathrm{<mtext>m</mtext>}}$ about 1.0 mM. Isoleucine and phenylalanine were major competitors, valine was about one-half as effective, while alanine, glycine and histidine had no effect. Temperature dependency of rates in the 0–10°C range yielded $\text{E}{}_{\mathrm{<mtext>a</mtext>}}\text{= 65}\text{kJ/mol}$ ($\text{Q}{}_{10}\text{= 2.7}$). The average first-order rate constant at 0°C was 0.1 min^?1, one-third the value of 0.3 min^?1 estimated for clearance of [¹⁴C]leucine by liver of these species in vivo. Affinity and specificity agreed well with in vivo data on liver clearance of leucine, both in Antarctic fish at 0°C and in temperate fish acclimated to 10°C and 20°C. The results indicate similar modifications of leucine transport associated with evolutionary cold adaptation and seasonal acclimation in fish.     

An algebraic model for the kinetics of covalent enzyme inhibition at low substrate concentrations

This article describes an integrated rate equation for the time course of covalent enzyme inhibition under the conditions where the substrate concentration is significantly lower than the corresponding Michaelis constant, for example, in the Omnia assays of epidermal growth factor receptor (EGFR) kinase. The newly described method is applicable to experimental conditions where the enzyme concentration is significantly lower than the dissociation constant of the initially formed reversible enzyme–inhibitor complex (no “tight binding”). A detailed comparison with the traditionally used rate equation for covalent inhibition is presented. The two methods produce approximately identical values of the first-order inactivation rate constant (k_inact). However, the inhibition constant (K_i), and therefore also the second-order inactivation rate constant k_inact/K_i, is underestimated by the traditional method by up to an order of magnitude.     

Membrane biofouling behaviors at cold temperatures in pilot-scale hollow fiber membrane bioreactors with quorum quenching

Abstract

In this study, the seasonality of the biofouling behavior of pilot-scale membrane bioreactors (MBRs) run in parallel with vacant sheets and quorum quenching (QQ) sheets using real municipal wastewater was investigated. QQ media delayed fouling, but low temperatures caused severe biofouling. The greater amount of extracellular polymeric substances (EPSs) produced in cold weather was responsible for the faster biofouling of a membrane, even with QQ media. There were significant negative relationships between EPS levels and water temperature. Cold weather was detrimental to the degradation of quorum sensing signal molecules by QQ sheets, whose activity was restored with a higher dose of QQ bacteria. The QQ bacteria in the sheets experienced a slight loss in activity during the early stage of the field test, but survived in the pilot-scale MBR fed with real wastewater. There were no significant discrepancies in treatment efficiency among conventional, vacant, and QQ MBRs.     

Some like it hot: Intra-Population Variation in behavioral Thermoregulation in Color-Polymorphic pygmy Grasshoppers

Ectothermic animals rely on external heat sources and behavioral thermoregulation to control body temperature, and are characterized by possessing physiological and behavioural traits which are temperature dependent. It has therefore been suggested that constraints on the range of body temperatures available to individuals imposed by phenotypic properties, such as coloration, may translate into differential fitness and selection against thermally inferior phenotypes. In this paper, I report an association between thermal preferences and thermal capacity (the ability to warm up when insolated) across different genetically coded color morphs of the pygmy grasshopper Tetrix subulata. Data on behavioral thermoregulation of individuals in a laboratory thermal gradient revealed a preference for higher body temperatures in females than in males, and significant variation among colour morphs in preferred body temperatures in females, but not in males. The variation in females was in perfect accordance with estimates of morph-specific differences in thermal capacity. Thus, dark morphs not only attain higher temperatures when exposed to augmented illumination, but also prefer higher body temperatures, compared to paler morphs. This intra-population divergence probably reflects an underlying variation among colour morphs in temperature optima, and is consistent with the notion that coloration, behaviour and physiology evolve in concert.     

Some like it hot: body and weapon size affect thermoregulation in horned beetles

Body size and shape affect thermoregulatory properties of organisms, and in turn are believed to have shaped macroevolutionary patterns of morphological diversity across many taxa. However, it is less clear whether thermoregulation plays a role in shaping intraspecific morphological diversity such as sexual dimorphisms or the conditional expression of exaggerated secondary sexual traits. Here, we investigate individual thermoregulatory properties in two species of horned beetles that share similar ecologies and body size ranges, but differ substantially in degree of sexual and male dimorphism. We find that intraspecific variation in body size had an unexpectedly large effect on thermal preference behavior and the ability to passively regulate body temperature. Furthermore, we find that the presence or absence of exaggerated secondary sexual traits dramatically altered thermal preference behavior, consistent with a thermoregulatory cost of horn possession. Lastly, we show that the increase in surface area associated with the expression of enlarged horns is, by itself, insufficient to account for the radically altered thermoregulatory behavior observed in horn-bearing males, and discuss possible alternative, physiological explanations. These findings are among the first to link intra-and interspecific variation in body- and weapon size to thermal preferences within and between insect species.