植物根系分泌物的生态效应

根系分泌物是在一定的生长条件下 ,活的且未被扰动的根系释放到根际环境中的有机物质的总称 ,在植物主动适应和抵御不良环境中具有重要作用 :(1)通过化感作用影响根际微生物和周围其它植物的生长 ,并进一步改善植物的生态环境 (生物因素 ) ;(2 )通过对土壤中矿质元素的溶解、螯合作用、迁移和活化等作用 ,不仅在营养缺乏的情况下提高矿质营养元素的有效性 ,而且在面临重金属胁迫时能降低根际中金属污染物的活性 ,减少植物对金属的吸收。根系分泌物在植物与环境的相互作用中起着传递信息的作用     

植物根系分泌物对土壤污染修复的作用及影响机理

生物修复是一种经济环保的土壤修复技术。根系分泌物是利用生物修复污染土壤过程中的关键物质,也是植物与土壤微生物进行物质交换和信息传递的重要载体,在植物响应污染物胁迫中扮演重要角色。研究植物根系分泌物对土壤污染修复的作用和影响机理,是深入理解植物和微生物环境适应机制的重要途径,对促进生物修复污染土壤有重要指导意义。从污染物胁迫对根系分泌物的影响、根系分泌物对土壤污染物环境行为的影响、根系分泌物在调控污染土壤中根际微生物群落结构和多样性中发挥的作用等几个方面综述了根系分泌物对土壤污染修复的影响及内在机制。研究结果表明,根系分泌物在降低重金属对植物的毒性、加速有机污染物降解等方面有非常重要的作用。根系分泌物对土壤微生物的丰度和多样性均有显著影响,其与根际微生物互作在土壤污染物的消减中发挥了重要的调控作用。在此基础上,提出了以往研究中的不足,并对污染物胁迫下根系分泌物未来研究的方向和趋势进行了展望。     

Production of recombinant proteins in plant root exudates.

The large-scale production of recombinant proteins in plants is limited by relatively low yields and difficulties in extraction and purification. These problems were addressed by engineering tobacco plants to continuously secrete recombinant proteins from their roots into a simple hydroponic medium. Three heterologous proteins of diverse origins (green fluorescent protein of jellyfish, human placental alkaline phosphatase [SEAP], and bacterial xylanase) were produced using the root secretion method (rhizosecretion). Protein secretion was dependent on the presence of the endoplasmic reticulum signal peptide fused to the recombinant protein sequence. All three secreted proteins retained their biological activity and, as shown for SEAP, accumulated in much higher amounts in the medium than in the root tissue.     

A novel method for characterisation and quantification of plant root exudates

A microcosm unit is described which readily allows manipulation of experimental conditions to enable the subsequent impact on root exudation release to be monitored with time. Festuca ovina and Plantago lanceolata seedlings were grown in this microcosm unit over a 34 day experimental period under conditions of high (3.75 mol m^–3 N) or low (1.25 mol m^–3 N) nitrate-nitrogen treatment. At the end of the experimental period the seedlings in the microcosms were labelled with [¹⁴C]-CO₂ and the fate of the label within the plant and its release by the roots monitored. Total organic carbon (TOC) content of the collected exudate material was measured throughout the experimental period as well as during the ¹⁴C-chase period and comparison of plant C budgets using these two measurements is discussed. Nitrogen treatment as found to have a greater effect on exudate release by F. ovina than by P. lanceolata seedlings as indicated by both the total organic carbon and ¹⁴C results. The use and applications of the microcosm unit are discussed.     

Chemotaxis ofAzospirillum brasilense towards compounds typical of plant root exudates

Nitrogen-fixingAzospirillum brasilense exhibits positive chemotaxis towards a large number of organic compounds (amino acids, saccharides, organic acids) typical for plant root exudates. The most effective attractants were malate, succinate, fructose and other compounds which serve as substrates forA. brasilense. Chemotactic response towards the majority of compounds was inducible, but in case of malate and succinate it was constitutive. Tactic response during the nitrogen-fixing process was essentially the same as in the presence of fixed nitrogen in the medium. Among organic compounds tested no repellents were found.     

Towards automatic metabolomic profiling of high-resolution one-dimensional proton NMR spectra

Nuclear magnetic resonance (NMR) and Mass Spectroscopy (MS) are the two most common spectroscopic analytical techniques employed in metabolomics. The large spectral datasets generated by NMR and MS are often analyzed using data reduction techniques like Principal Component Analysis (PCA). Although rapid, these methods are susceptible to solvent and matrix effects, high rates of false positives, lack of reproducibility and limited data transferability from one platform to the next. Given these limitations, a growing trend in both NMR and MS-based metabolomics is towards targeted profiling or "quantitative" metabolomics, wherein compounds are identified and quantified via spectral fitting prior to any statistical analysis.?Despite the obvious advantages of this method, targeted profiling is hindered by the time required to perform manual or computer-assisted spectral fitting. In an effort to increase data analysis throughput for NMR-based metabolomics, we have developed an automatic method for identifying and quantifying metabolites in one-dimensional (1D) proton NMR spectra. This new algorithm is capable of using carefully constructed reference spectra and optimizing thousands of variables to reconstruct experimental NMR spectra of biofluids using rules and concepts derived from physical chemistry and NMR theory. The automated profiling program has been tested against spectra of synthetic mixtures as well as biological spectra of urine, serum and cerebral spinal fluid (CSF). Our results indicate that the algorithm can correctly identify compounds with high fidelity in each biofluid sample (except for urine). Furthermore, the metabolite concentrations exhibit a very high correlation with both simulated and manually-detected values.     

Repression of Pseudomonas putida phenanthrene-degrading activity by plant root extracts and exudates

The phenanthrene-degrading activity (PDA) of Pseudomonas putida ATCC 17484 was repressed after incubation with plant root extracts of oat (Avena sativa), osage orange (Maclura pomifera), hybrid willow (Salix alba x matsudana), kou (Cordia subcordata) and milo (Thespesia populnea) and plant root exudates of oat (Avena sativa) and hybrid poplar (Populus deltoides x nigra DN34). Total organic carbon content of root extracts ranged from 103 to 395 mg l(-1). Characterization of root extracts identified acetate (not detectable to 8.0 mg l(-1)), amino acids (1.7-17.3 mg l(-1)) and glucose (1.6-14.0 mg l(-1)), indicating a complex mixture of substrates. Repression was also observed after exposure to potential root-derived substrates, including organic acids, glucose (carbohydrate) and glutamate (amino acid). Carbon source regulation (e.g. catabolite repression) was apparently responsible for the observed repression of P. putida PDA by root extracts. However, we showed that P. putida grows on root extracts and exudates as sole carbon and energy sources. Enhanced growth on root products may compensate for partial repression, because larger microbial populations are conducive to faster degradation rates. This would explain the commonly reported increase in phenanthrene removal in the rhizosphere.     

植物根系分泌物生态效应及其影响因素研究综述

植物根系分泌物的形成是植物体代谢过程中重要的生理现象,为“植物-土壤”体系物质周转的重要环节.研究植物根系分泌物对于了解陆地生态系统质能过程、碳氮收支平衡及提高生态系统的初级生产具有重要意义.本文从植物根系分泌物对植物生理性状、土壤微生物、土壤物质周转及有机污染物降解影响等4个方面对植物根系分泌物的生态效应进行综述,并从重金属含量、营养元素水平、土壤水分和光热条件、物种基因型、土壤微生物状况和外源有机污染物添加的角度综述了影响植物根系分泌物的因素,旨在对植物根系分泌物的生态效应和影响因素进行总结,并根据目前的研究现状,从研究对象、研究方法和效应评估方面进行了展望.     

Regulation and function of root exudates

Root-secreted chemicals mediate multi-partite interactions in the rhizosphere, where plant roots continually respond to and alter their immediate environment. Increasing evidence suggests that root exudates initiate and modulate dialogue between roots and soil microbes. For example, root exudates serve as signals that initiate symbiosis with rhizobia and mycorrhizal fungi. In addition, root exudates maintain and support a highly specific diversity of microbes in the rhizosphere of a given particular plant species, thus suggesting a close evolutionary link. In this review, we focus mainly on compiling the information available on the regulation and mechanisms of root exudation processes, and provide some ideas related to the evolutionary role of root exudates in shaping soil microbial communities.     

Metabolite fingerprinting and profiling in plants using NMR

Although less sensitive than mass spectrometry (MS), nuclear magnetic resonance (NMR) spectroscopy provides a powerful complementary technique for the identification and quantitative analysis of plant metabolites either in vivo or in tissue extracts. In one approach, metabolite fingerprinting, multivariate analysis of unassigned 1H NMR spectra is used to compare the overall metabolic composition of wild-type, mutant, and transgenic plant material, and to assess the impact of stress conditions on the plant metabolome. Metabolite fingerprinting by NMR is a fast, convenient, and effective tool for discriminating between groups of related samples and it identifies the most important regions of the spectrum for further analysis. In a second approach, metabolite profiling, the 1H NMR spectra of tissue extracts are assigned, a process that typically identifies 20-40 metabolites in an unfractionated extract. These profiles may also be used to compare groups of samples, and significant differences in metabolite concentrations provide the basis for hypotheses on the underlying causes for the observed segregation of the groups. Both approaches generate a metabolic phenotype for a plant, based on a system-wide but incomplete analysis of the plant metabolome. However, a review of the literature suggests that the emphasis so far has been on the accumulation of analytical data and sample classification, and that the potential of 1H NMR spectroscopy as a tool for probing the operation of metabolic networks, or as a functional genomics tool for identifying gene function, is largely untapped.     

Lead complexation behaviour of root exudates of salt marsh plant Salicornia europaea L

Abstract

Root exudates are considered to have an important role in mobility and bioavailability of heavy metals. High molecular weight (HMW) substances are the main components of root exudates, however, knowledge about their interactions with heavy metals is lacking. In the present study, Pb(II) complexation of the HMW fluorescent fractions in root exudates from Salicornia europaea L. was investigated using excitation emission matrix (EEM) fluorescence spectroscopy. Two protein-like fluorescence peaks were identified in the EEM spectrum of root exudates. The fluorescence of both peaks was clearly quenched by Pb(II). The values of conditional stability constants, log K_a, for these two protein-like fluorescence peaks were 4.14 and 3.79. This indicates that the fluorescent substances are strong Pb(II) complexing organic ligands.     

大蒜根系分泌物的化感作用

以苍山白蒜和蔡家坡紫蒜为材料,采用水培方法收集根系分泌物,研究了2个大蒜品种的根系分泌物对莴苣种子发芽和幼苗生长及对黄瓜枯萎病菌、西瓜枯萎病菌的化感效应.结果表明:2个大蒜品种的根系分泌物对莴苣种子发芽和幼苗生长均表现为低浓度(0.1、0.2 g·mL-1)促进、高浓度(0.4、0.6 g·mL-1)抑制,高浓度时蔡家坡紫蒜的抑制作用大于苍山白蒜;对黄瓜枯萎病菌和西瓜枯萎病菌的菌丝生长及孢子萌发均表现为抑制作用,随着根系分泌物浓度的提高,抑制作用增强,其中黄瓜枯萎病菌较敏感,且蔡家坡紫蒜的抑制作用大于苍山白蒜.     

Study of soybean and lentil root exudates

Summary Some polyphenolic compounds have been identified in root exudates of two species of legumes (both cultivated in sterile conditions): for lentil, three desoxy-5 flavones (4′,7-dihydroxy, 3′,4′,7-trihydroxy and 4′,7-dihydroxy, 3′-methoxyflavones) and for soybean: two isoflavonoids, coumestrol and daidzein (or 4′,7-dihydroxyisoflavone). Identified compounds are polyphenolic aglycones whereas roots contain the corresponding glycosides, showing that a hydrolysis takes place at the time of exudation. Compounds are observed in plantlet exudates as soon as the first day after planting. Their daily quantitative variations parallel those of total phenolic compounds. Exudated coumestrol and 4′,7-dihydroxyflavone amounts are estimated at about 20% of root content in these molecules.     

Non-degradative dissolution and acetylation of ball-milled plant cell walls: high-resolution solution-state NMR

Two solvent systems for fully dissolving, and optionally derivatizing, finely ground plant cell wall material at room temperature are described: dimethylsulfoxide (DMSO) and tetrabutylammonium fluoride (TBAF) or N-methylimidazole (NMI). In situ acetylation produces acetylated cell walls (Ac-CWs) that are fully soluble in chloroform. Lignin structures tested remain fully intact. The dispersion of 13C-1H correlations afforded by two-dimensional (2D) nuclear magnetic resonance (NMR) experiments reveals the major lignin units, allowing the whole lignin fraction to be analyzed by high-resolution solution-state NMR methods for the first time. Non-degradative cell wall dissolution offers the potential to analyze polysaccharide components, and improve current cell wall analytical methods by using standard homogeneous solution-state chemistry.     

Metabolite profiling and fingerprinting of Hypericum species: a comparison of MS and NMR metabolomics

Hypericum perforatum, commonly known as St. John’s wort, is a popular herbal supplement used for the treatment of mild to moderate depression. The major secondary metabolites of St. John’s wort extracts include phenylpropanoids, flavonoids, xanthones, phloroglucinols, and naphthodianthrones. There are over 400 species in the genus Hypericum world-wide, most of which are little or not characterized in terms of phytochemical or pharmacological properties. Metabolomics techniques were used to investigate the natural product diversity within the genus Hypericum (Hypericaceae) and its correlation to bioactivity, exemplified by cytotoxic properties. Utilizing nuclear magnetic resonance (NMR) fingerprinting and mass spectrometry (MS) metabolic profiling techniques, MS and NMR spectra of extracts from H. perforatum, H. polyphyllum, H. tetrapterum, H. androsaemum, H. inodorum, H. undulatum and H. kouytchense were evaluated and submitted to statistical multivariate analyses. Although comparable score plots in principal component analysis were derived from both MS and NMR datasets, loading plots reveal, that different set of metabolites contribute for species segregation in each dataset. Major peaks in ¹H NMR and MS spectra contributing to species discrimination were assigned as those of hyperforins, lipids, chlorogenic and shikimic acid. Shikimic acid and its downstream phenylpropanoids were more enriched in H. perforatum, H. androsaemum, H. kouytchense and H. inodorum extracts; whereas a novel hyperforin was found exclusively in H. polyphyllum. Next to H. perforatum, H. polyphyllum and H. tetrapterum show the highest levels of hypericins, and H. perforatum and H. polyphyllum are highest in phloroglucinols, suggesting that the latter species might be used as an alternative to St. John’s wort. However, the major hyperforin-type compound in H. polyphyllum possesses a novel constitution of yet unknown bioactivity. Anti-cancer in vitro assays to evaluate the ability of extracts from Hypericum species in inhibiting prostate and colon cancer growth suggest that such bioactivity might be predicted by gross metabolic profiling.     

Endophytic root colonization of gramineous plants by Herbaspirillum frisingense

Herbaspirillum frisingense is a diazotrophic betaproteobacterium isolated from C4-energy plants, for example Miscanthus sinensis. To demonstrate endophytic colonization unequivocally, immunological labeling techniques using monospecific polyclonal antibodies against two H. frisingense strains and green fluorescent protein (GFP)-fluorescence tagging were applied. The polyclonal antibodies enabled specific in situ identification and very detailed localization of H. frisingense isolates Mb11 and GSF30(T) within roots of Miscanthusxgiganteus seedlings. Three days after inoculation, cells were found inside root cortex cells and after 7 days they were colonizing the vascular tissue in the central cylinder. GFP-tagged H. frisingense strains could be detected and localized in uncut root material by confocal laser scanning microscopy and were found as endophytes in cortex cells, intercellular spaces and the central cylinder of barley roots. Concerning the production of potential plant effector molecules, H. frisingense strain GSF30(T) tested positive for the production of indole-3-acetic acid, while Mb11 was shown to produce N-acylhomoserine lactones, and both strains were able to utilize 1-aminocyclopropane-1-carboxylate (ACC), providing an indication of the activity of an ACC-deaminase. These results clearly present H. frisingense as a true plant endophyte and, although initial greenhouse experiments did not lead to clear plant growth stimulation, demonstrate the potential of this species for beneficial effects on the growth of crop plants.     

Decomposition of root exudates in soil

The conversion of synthetic root exudates, i.e. of a mixture of amino acids, organic acids and sugars, added to soil in a single dose or continuously, was studied. After the addition of a single dose, the root exudates were gradually mineralized and after 76 hours, 85% of carbon had been released in the form of carbon dioxide. The extent and rate of mineralization was not influenced by the simultaneous addition of ammonium phosphate. The continuous addition of substrate formed a model artificial rhizosphere. In the steady state, 93% of the carbon in the added substrate was mineralized to carbon dioxide. The conversion of organic acids, sugars and amino acids and the mineralization of nitrogen was studied simultaneously by chromatography. In soil continuously enriched with root exudates, phenomena similar to the rhizosphere effect in nature were observed both in the numbers of microorganisms and in the relative incidence of the nutritional groups of bacteria.     

B-Vitamins in root exudates of cotton

Summary Cotton field soils fromFusarium wilt-free zone (KPT) and a wilt-sick zone (PLD), and root exudates of diploid and amphidiploid strains of cotton grown in these two soils were analyzed for B-vitamins by microbiological assay technique employing X-ray mutants ofNeurospora crassa andN. sitophila.PLD soil was found to contain choline, pyridoxine,p-aminobenzoic acid, traces of biotin, and inositol. KPT soil was found to contain pyridoxine, choline, thiamine,p-aminobenzoic acid, and traces of biotin and inositol.Thiamine, biotin, pyridoxine, andp-aminobenzoic acid were found in higher amounts in the exudates of diploid cotton strains, especially K 2 and 6186.9 in KPT soil. In addition to the above, choline was also found in the exudates of diploid strains grown in PLD soil.Amphidiploid strains showed comparatively lower amounts of these vitamins in the root exudates with a few exceptions.In the inoculated series, inositol was absent in most cases and the contents of other vitamins were reduced to varying extents compared to the respective healthy controls.Part of Doctoral thesis, University of Madras.     

Complex formation between trigliceropeptides pseudomonades and plant root exudates as a mechanism of action on phytopathogens

The influence of plant exudates on the antifungal activity of Pseudomonas chlororaphis strains (IB 6, IB 51) and P. putida (IB 17) was investigated in model experiments. Using UV spectroscopy and polarimetry methods, triglyceropeptide metabolites from the Pseudomonas strain were shown to form intermolecular complexes with plant exudates such as carbohydrates, organic acids, and amino acids. The stoichiometric contents of metabolite-exudate complexes were evaluated.