Café Scientifique--déjà vu

Is the Café Scientifique a fashionable by-product of a comfortable age or an indicator of the changing relationship between science and society?     

两极法与pièce esquillées

两极法与ｐｉèｃｅｅｓｑｕｉｌｌéｅｓ＠陈淳￥复旦大学文物与博物馆学系两极法与ｐｉèｃｅｅｓｑｕｉｌéｅｓ陈淳（复旦大学文物与博物馆学系,上海２００４３３）收稿日期：１９９６－０９－２３１前言两极法或砸击法是最原始和最简单的打片方法之一。它被史前人类甚至现...     

The integrated Michaelis-Menten rate equation: déjà vu or vu jàdé?

A recent article of Johnson and Goody (Biochemistry, 2011;50:8264–8269) described the almost-100-years-old paper of Michaelis and Menten. Johnson and Goody translated this classic article and presented the historical perspective to one of incipient enzyme-reaction data analysis, including a pioneering global fit of the integrated rate equation in its implicit form to the experimental time-course data. They reanalyzed these data, although only numerical techniques were used to solve the model equations. However, there is also the still little known algebraic rate-integration equation in a closed form that enables direct fitting of the data. Therefore, in this commentary, I briefly present the integral solution of the Michaelis-Menten rate equation, which has been largely overlooked for three decades. This solution is expressed in terms of the Lambert W function, and I demonstrate here its use for global nonlinear regression curve fitting, as carried out with the original time-course dataset of Michaelis and Menten.     

Déjà vu in proteomics. A hit parade of repeatedly identified differentially expressed proteins

After reading many 2-DE-based articles featuring lists of the differentially expressed proteins, one starts experiencing a disturbing déjà vu. The same proteins seem to predominate regardless of the experiment, tissue or species. To quantify the occurrence of individual differentially expressed proteins in 2-DE experiment reports, we compiled the identities of differentially expressed proteins identified in human, mouse, and rat tissues published in three recent volumes of Proteomics and calculated the appearance of the most predominant proteins in the dataset. The most frequently identified protein is a highly abundant glycolytic enzyme enolase 1, differentially expressed in nearly every third experiment on both human and rodent tissues. Heat-shock protein 27 (HSP27) and heat-shock protein 60 (HSP60) were differentially expressed in about 30 percent of human and rodent samples, respectively. Considering protein families as units, keratins and peroxiredoxins are the most frequently identified molecules, with at least one member of the group being differentially expressed in about 40 percent of all experiments. We suggest that the frequent identification of these proteins must be considered in the interpretation of any 2-DE studies. We consider if these commonly observed changes represent common cellular stress responses or are a reflection of the technical limitations of 2-DE.     

Précautions,pièges et artéfacts en TEP/TDM du thorax

PET/CT with ¹⁸F-FDG is a test widely used in the evaluation of chest diseases as diverse as oncology indications and in particular the evaluation of pulmonary nodules, mediastinal disorders of the chest wall, breast lesions or even heart diseases including those of infectious valves. Despite the many precautions taken to the successful completion of the examination, a caution of the interpretation of the exam is required, given the pitfalls and artifacts inherent to the technique, respiratory and cardiac movements, the misrepresentation lesions (false positives of false negatives) or altered by the treatment. Their knowledge can minimize their impact on the interpretations and avoid the use of supplements investigations, sometimes invasive, or worse, administering a noxious or inappropriate treatment. The purpose of this paper is to describe the pitfalls and artifacts of PET/CT with ¹⁸F-FDG commonly found in the thoracic region but also to expose the various precautions that can help the conduct of the exam, the interpretation and even the optimal patient management.     

Le Jas d’en Biel 2, nouveau site gravettien du piémont est-méditerranéen des Pyrénées

The Corbières massif forms the lowest part of the Eastern Pyrenees, and as such is the easiest natural passage to connect the coastal plains of Languedoc and Roussillon in Southern France with those of Gironès and Barcelona in Northern Spanish Catalonia. This geographical situation confers on each of the sites discovered in this passage a role of milestone that can allow us to apprehend the dynamics of anthropic movements and relationships across these spaces. In 2007, the presence of a first Gravettian site in this Northern Pyrenean foothill was published: Jas d’en Biel 1. This discovery filled an “archaeological void” between the Gravettian sites of Languedoc and those of Spanish Catalonia. The discovery of a new site: Jas d’en Biel 2, 300 m from the first, reinforces the Gravettian presence in this region. The fact that the two sites present similar characteristics in terms of anthropic choices (solar orientation, proximity to a watercourse, lightness of the soil, protection from the wind, etc.) are all parameters that demonstrate the choices made by Gravettian men. The respective compositions of the lithic industries of the series do not show significant differences, allowing us to imagine a certain synchronism between the two sites. Burins are the most numerous tools, but at Jas d’en Biel 2 we find specimens close to the Raysse type that were absent from Jas d’en Biel 1. Jas d’en Biel 2, as well as its neighbor Jas d’en Biel 1, shows similarities with certain sites in Languedoc, such as Bois-des-Brousses, La Treille, La Verrière, the caves of Bize or La Crouzade. These are usually small deposits that belong to terminal moments of the Gravettian period. All these parameters point to similarities between the Languedoc sites and Jas d’en Biel 1 and 2. The geographical position of the Corbières massif allows us to consider the Jas d’en Biel sites as the last milestones of the Gravettian period upstream from the crossing of the Pyrenean passes, before the sites of the Serinyà region, such as l’Arbreda. Recent surveys carried out in the same valley of the Ravin d’en Saman have made it possible to locate and identify several other open-air settlements related to the Gravettian lato sensu. An analysis of intra- and extra-site characteristics will aim to understand the parameters that led men to settle in this micro-zone, as well as the reasons for this “concentration”.     

Déjà vu--a study of duplicate citations in Medline

MOTIVATION: Duplicate publication impacts the quality of the scientific corpus, has been difficult to detect, and studies this far have been limited in scope and size. Using text similarity searches, we were able to identify signatures of duplicate citations among a body of abstracts. RESULTS: A sample of 62,213 Medline citations was examined and a database of manually verified duplicate citations was created to study author publication behavior. We found that 0.04% of the citations with no shared authors were highly similar and are thus potential cases of plagiarism. 1.35% with shared authors were sufficiently similar to be considered a duplicate. Extrapolating, this would correspond to 3500 and 117,500 duplicate citations in total, respectively. Availability: eTBLAST, an automated citation matching tool, and Déjà vu, the duplicate citation database, are freely available at http://invention.swmed.edu/ and http://spore.swmed.edu/dejavu