Are non-functional, unfolded proteins ('junk proteins') common in the genome?

It has recently been shown that many proteins are unfolded in their functional state. In addition, a large number of stretches of protein sequences are predicted to be unfolded. It has been argued that the high frequency of occurrence of these predicted unfolded sequences indicates that the majority of these sequences must also be functional. These sequences tend to be of low complexity. It is well established that certain types of low-complexity sequences are genetically unstable, and are prone to expand in the genome. It is possible, therefore, that in addition to these well-characterised functional unfolded proteins, there are a large number of unfolded proteins that are non-functional. Analogous to 'junk DNA' these protein sequences may arise due to physical characteristics of DNA. Their high frequency may reflect, therefore, the high probability of expansion in the genome. Such 'junk proteins' would not be advantageous, and may be mildly deleterious to the cell.     

Hypoxic preconditioning is a phenomenon increasing tolerance of cardiomyocytes to hypoxia-reoxygenation

The work covers the problem of hypoxic preconditioning (HP) carried out in isolated cardiomyocytes. Papers on delayed HP in vivo are comparatively few, and only some single works are devoted to early preconditioning in vivo. It has been established that the HP limits necrosis and apoptosis of cardiomyocytes and improves contractility of the isolated heart after ischemia (hypoxia) and reperfusion (reoxygenation). It was found that adenosine was a trigger of iP in vitro. It was proved that NO* was a trigger of HP both in vitro and in vivo. It was shown that reactive oxygen species also were triggers of hypoxic preconditioning. It was shown that ERK1/2 and p38 kinase played important role in delayed HP in vitro.     

Meiofauna and the origins of the Metazoa*

Possible alternative habitats and life-styles of the original metazoan are considered. It is argued from the dominance of the benthic habitat in present-day groups that the original metazoan habitat was benthic rather than planktonic. Similarly, plesiomorphic metazoan taxa tend to be holobenthic rather than pelago-benthic. It is therefore probable that the early Metazoa were holobenthic. The concept of plesiohabitats and apohabitats in the evolution of taxa is presented. This leads to the proposition that the early metazoans were interstitial bionts of fine sand. Finally, the controversy concerning the aerobic or anaerobic origin of the Metazoa is considered. It is shown that competition theory predicts that plesiomorphic taxa are likely to remain in plesiohabitats. Diagrams showing the possible evolution of major taxa in relation to available habitats are presented. It is concluded that the earliest Metazoa could have evolved in anaerobic marine sand and that the early Plathelminthomorpha and Aschelminthes did so.     

Metabolic regulation of neuron functions

A short analytical review of Soviet and foreign studies devoted to metabolic regulation of neuron functioning is presented. It is shown that the electrical activity of neuron is accompanied by structural changes and an increase in RNA content. It is assumed that these changes are initiated by calcium ions, coming to the neuron during its excitation. The principles of metabolic regulation of functioning of electro- and chemoexcitable neuronal membranes are considered. It is shown that the metabolic reactions can be an intermediate between the activated chemoreceptor and the electrical response of the cell. Evidence is presented that the electroexcitable and chemosensitive structures in the membrane modulate each other. The role of intracellular messengers in regulating the activity of receptors and channels is considered. Possible mechanisms for their modifications under the influence of cellular factors are discussed. It is shown that the work of neuron is controlled by several metabolic regulatory systems simultaneously.     

Explanation for the pyramid effect

It was established that the dynamics of volatile compounds from samples placed inside chambers is affected by the shape of the chambers. The mechanisms of this effect were analyzed. It was shown that the experimental results obtained previously are consistent with the theory. It was also shown that all phenomena observed in constructions of various shapes are described in terms of the known physical conceptions. Chambers with outside pulsating heating are variations of the known "Brown motor devices".     

Cooperative bimetallic reactivity

A number of bimetallic complexes of a macrocyclic binucleating ligand containing both six- and four-coordinate binding sites have been prepared in order to try to reproduce the behavior of certain metalloproteins. It was found that two-metal oxidation is severely impeded in bimetallic systems. It is postulated that the mutual deactivation of metal oxidation is principally the result of unfavorable ligand conformational adjustments which occur after the first metal is oxidized. It is shown that when these conformational restraints are removed, two-metal oxidations are possible.     

Demonstrating Weakly Acid-Fast Tubercle Bacteria in Sputum

Acid-fastness of the tubercle bacteria has long been used as the common method of diagnosis in sputum. It has been suggested sometimes that tuberculosis could occur without demonstrable bacteria, as well as with acid-fast bacteria, non-acid-fast bacteria or granules. It is shown in this paper that some of the sputa which are negative to the standard staining technic will show rods, rods with round polar bodies, or similar bodies without the rod portion. It is also pointed out that the decolorization of the smears by acid alcohol be shortened to approximately 3 to 5 seconds and picric acid be used as a counterstain. These forms are apparently the varying stages of the loss of acid-fastness. It is essential that a counterstain be used which will not interfere, and yellow is indicated because it does not absorb the red rays. Sputa which are negative to the standard acid-fast staining technic but which come from persons with a variable intermittent fever should be stained by this modified technic before they are pronounced germ-free.     

Assessment of the role of chemoreception in the mate choice in barbs of the Barbus intermedius complex from Lake Tana, Ethiopia

The role of chemoreception in mate choice was studied in barbs of the complex Barbus intermedius from Lake Tana. It was found that chemical communication may be used in reproductive interactions of the barbs, and that males are responsible for the choice. Mature males tend to prefer ripe females and avoid both immature females and mature males, or are indifferent to them. It was shown that selectivity in mate choice by certain barb morphotypes could reduce the probability of interbreeding between different morphotypes, but not provide for reproductive isolation between them. It was hypothesized that the mate groups are finally formed as a result of direct interactions between potential partners, mediated by tactile reception or specific behavioral patterns.     

Nonindigenous invertebrates in the periphyton and benthos of upper Volga reservoirs: A review

The mechanisms, ways, and traits of acclimatization of aquatic animals within and outside their historical ranges are reviewed. It is shown on the example of the upper Volga basin that formation still continues of the fauna in reservoirs that began after their impoundment during 1930s–1950s. It is also shown that Ponto-Caspian invaders and intentionally introduced Baikal amphipods play a great role in this process. The data on the traits of biological cycles of mass nonindigenous invertebrates in upper Volga reservoirs are presented. The main ecological factors facilitating expansion of new species in reservoirs are demonstrated. It is shown that the assessment of the functional role of dreissena in waterbodies should include determination of the abundance of the larvae of this species in plankton.     

Do oxidatively modified proteins cause ALS?

Over 90 individual mutations in SOD1 are known to cause familial amyotrophic lateral sclerosis (FALS). It is widely accepted that these mutations exert their toxic effects by a gain of function mechanism, but the nature of these toxic effects is as yet unknown. It has been proposed by several laboratories that reactions of FALS-mutant CuZnSOD are the source of elevated oxidative stress in CuZnSOD-linked FALS. It has also been proposed that aggregates of CuZnSOD are somehow involved in the disease. The hypothesis that aggregates of CuZnSOD cause ALS is particularly attractive because protein aggregates are frequently associated with other neurodegenerative diseases. Recent evidence increasingly suggests that protein aggregates containing CuZnSOD protein play a role in CuZnSOD-linked ALS, but it is not yet know why the aggregates form nor if the CuZnSOD proteins in the aggregates are cleaved, oxidized, demetallated, or otherwise covalently modified.     

The interaction between the synapses of a single motor fiber

It has been shown that stimulation of synapses of the giant motor fibers of the third roots of Cambarus clarkii can block transmission at other synapses located on the same fiber. Peripherally located synapses block most synapses which are more centrally located. The reverse is true in a small number of cases. Possible reasons for this difference are discussed. It was further found that the two medial giant fibers in fresh, carefully dissected, preparations show a functional connection in the brain. It is probable that, under natural conditions, both medial giant fibers are always active at the same time.     

Acoustic signal characters in interspecific hybrids of bank and red-backed voles

It has been found that distress signals of bank and northern red-backed voles and their hybrids do not differ in qualitative characters, but the modes of the acoustic signal parameters in many cases differ in the hybrids depending on their origin and can be correlated with the inheritance of some morphological characters that are typical for the species. It is noted that the distress-signal frequencies (quartiles) differ significantly in the first-generation hybrids of various origin and their characteristics are closer to those of the paternal parent species. It has been found that the inheritance of the frequency characteristics by the second-generation hybrids does not have a well-pronounced regularity.     

Aspects of parameter estimation in ascertainment sampling schemes.

It has recently been suggested that ascertainment sampling estimation procedures commonly used are not fully efficient in that the number of unobserved families is an unknown parameter that should be estimated (contrary to common practice) along with the genetic parameters for fully efficient estimation. It has also been suggested that the frequency distribution of family size contains unknown parameters that should similarly be estimated with the genetic parameters. These two suggestions are considered in this paper. It is shown by means of an equivalence theorem that in both cases the estimates and their variances obtained by adopting the suggested procedure are identical with those found by ignoring the unobserved families and by ignoring the family-size distribution. This demonstration leads to a formal justification of further procedures, in particular: (1) use of "method-of-moments" estimators, (2) ignoring the ascertainment scheme in some cases when estimating parameters, and (3) forming estimates of parameters when various parts of the data are obtained by different ascertainment schemes.     

The function of melanin or six blind people examine an elephant.

The pigment melanin is found in all living kingdoms and in many different structures and forms. When its various functions are examined separately, its behaviors seem disparate and conflicting. It has a clear role in camouflage and sexual display. Other major roles are examined critically. It can act as a sun screen but is not a very effective one. It can also scavenge active chemical species, but this, too, is not done very effectively. It produces active radicals that can damage DNA. It binds to drugs in ways that are either beneficial or deleterious. Aside from camouflage, its other roles can be brought together by a unifying hypothesis as first proposed by Proctor and McGinness nearly 20 years ago. Melanin is envisaged as an energy transducer with the properties of an amorphous semiconductor. It can absorb many different types of energy and dissipate them in the form of heat. However, if the energy input is too great, the output can be expressed in the form of activated chemical species that can damage cellular macromolecules resulting in cell death, mutations and cancer. The protective aspect of melanin in dark skin is seen as resulting from its high concentration and its confinement to ellipsoidal and densely packed organelles that can effectively shield the nucleus. In light skin, its radical nature is seen as potentially participating in the carcinogenic process, particularly when overwhelmed by intense episodes of sunburn.     

Morphology and behaviour of sex chromosomes during meiosis in Ascaris suum.

The morphology and behaviour of sex chromosomes was studied in A. suum during meiosis. It was found that the five sex chromosomes have their proper characteristic. The largest is submetacentric, of 2 microns mean length. The second largest is acrocentric, mean length of 1.4 mu. The third largest is metacentric, 1.2 mu mean length. The fourth and the fifth are metacentric, of mean length of 1 mu. In primary and secondary spermatocyte cells the sex chromosomes are close to each other, most often in the peripheral part of the cell. During anaphase I the pentad sex chromosomes lie freely between the two sister cells. It is assumed that in anaphase II the five sex chromosomes divide equally and are regularly distributed in the daughter cells. It was found that the chromosomes set of female Ascaris in metaphase I contains 24 bivalent chromosomes n = 24 and of male Ascaris 19 bivalents and 5 univalents. It is assumed that the univalent chromosomes, found in spermatocyte cells, determine sex.     

On the Utilization of Energy Minimization to the Study of Ion Selectivity

The major pitfalls in studying ion selectivity in binding site models using energy minimization based methods are examined and discussed. It is shown that the properties derived from energy minimization are strongly configuration-dependent and that the results should be interpreted with caution. It is concluded that computational studies of ion selectivity must include thermal fluctuations and entropic effects.     

Reflections on the eyes of butterflies

Recent literature concerning insect vision has placed considerable emphasis upon the brightly coloured reflections observable in the eyes of darkadapted butterflies. It is frequently argued that these reflections originate in tracheoles near the basement membrane and are obscured by pigment migration. This theory was tested by a variety of physiological and optical methods and found to be inadequate.It is proposed that the reflections originate in the sub-corneal region (corneal process). Light adaptation of the eye results in a (photomechanical) contraction of specific retinula cells, thereby ‘stretching’ the corneal process and altering its optical properties. It is this mechanism which causes the extinction of the reflections.It is likely that structures within the cornea are important in determining the ‘colour’ of the reflections.     

The dominant motivation in the mechanisms of the conditioned reflex

It is substantiated that the mechanisms of dominant motivations play an essential role in conditioning. It is shown that motivations change convergent and chemical characteristics of single neurons of different brain structures and, especially, their sensitivity to corresponding reinforcing stimuli. As a result, motivation plays a role of an initial "canvas", against the background of which molecular "engrams of reinforcement" are built. The processes of interaction between the dominant motivation and reinforcement are mainly addressed to the apparatus of the action result acceptor. It is shown that dominant motivations participate not only in construction of molecular reinforcement engrams but also in their forestalling retrieval.     

Fertility and mortality differentials among the population groups of the Himalayas

Selection potential based on differential fertility and mortality has been computed for 24 Himalayan populations classified into four groups: Himalayan populations with Asian affinities (HPA), Brahmans, Rajputs, and Scheduled Castes (Shilpkars). Irrespective of the methodology followed, the total index of selection was found to be highest (0.794) in Barbatiyas (HPA) and lowest (0.428) in Rajputs. The relative contribution of fertility component (If) to the index of total selection (It) is higher than the corresponding mortality component (Im) in all 24 groups. An analysis of correlation and regression on different components of the indices of selection performed among these 24 Himalayan populations revealed that the contributions of If in determining It are stronger than Im. Further, both If and Im are strongly associated with It and account for 76% and 67% of total variability in It, respectively. Examination of the relationship of the selection potential with the differential altitude and social categories showed a decrease in the index from high altitude to low altitude. Similarly, an inverse relationship was found between various indices and social categories. Himalayan populations with Asian affinities (HPA) in the present study reveal higher values of selection potential. Interestingly, these populations invariably reside in high altitude areas where health and communication infrastructures are poorly developed. Thus, the differential pattern of fertility and mortality among the Himalayan populations indicates that they are passing through a stage of transition, as is evident from the decrease in various selection indices. It is also apparent that groups that are less developed socioeconomically, as well as those inhabiting high altitude regions, are lagging behind in this process.     

Studies on the fate of aldolase molecules in the aging rat lens

It was found that aldolase activity declined considerably in the lens of adult animals with increasing age. Immunoassay showed that defective aldolase C molecules were accumulated. In addition, antibody prepared against denatured enzyme preferentially removes inactive molecules from lens homogenates without affecting active molecules. It is concluded that defective aldolase molecules encountered in aging lenses are at least partially denatured and are inactive.