Persistence of Escherichia coli O157:H7 in soil and on plant roots

Soil microcosms were inoculated with Escherichia coli O157:H7 to test persistence in fallow soil, on roots of cover crops and in presence of manure. In fallow soils, E. coli O157:H7 persisted for 25-41 days, on rye roots for 47-96 days and on alfalfa roots, in a silt loam soil, for 92 days whereas on other legumes persistence ranged from 25-40 days, similar to fallow soil. Manure did not seem to affect the persistence of E. coli O157:H7 in these soils. Indigenous and manure-applied coliform populations often decreased faster when E. coli O157:H7 was applied, indicating possible competition between microflora. Coliform populations in microcosms not inoculated with E. coli O157:H7 decreased more slowly or increased. Microbial community analyses showed little effect for E. coli O157:H7 inoculation or addition of manure. Microbial community metabolic activity was enhanced from rye roots after 14 days and by 63 days from alfalfa roots. Microbial community lactose utilization increased over time on rye roots in all soils and on alfalfa roots in a silt loam soil when E. coli O157:H7 was inoculated. Lactose utilization also increased for uninoculated rye roots, soil around rye roots and in some fallow soils. Our data suggest that clay increases persistence and activity of E. coli O157:H7 and other coliforms. In frozen soil stored for over 500 days, E. coli O157:H7 was viable in 37% of tested samples. In summary, E. coli O157:H7 persisted longer and activity was enhanced with some cover crops in these soils due to plant roots, the presence of clay and freezing.     

Effect of soil temperature on nitrogen fixation on roots of rice and reed

Summary The relation of nitrogenase activity (ethylene evolution) to soil temperature or incubation temperature of roots was determined on two genera of swamp plants, namely rice (Oryza sativa) cultivated in tropical climate and reed (Phragmites communis) grown in temperate regions. For both intact rice plants and excised rice roots the optimum temperature was 35°C. On excised roots nitrogenase activity responded more sensitivity to changes in temperature. In contrast to intact rice plants no ethylene evolution occurred on excised roots at 17 and 44°C. On reed roots temperature optimum was between 26 and 30°C which is clearly lower than on rice (35°C). The temperature range in which nitrogen fixation occurred was, however, similar to that of rice, although on a lower level. The results suggest a higher potential of the tropics for associative N₂ fixation, while in cooler climates the lower temperatures appear to be a major limiting factor.     

Survival and growth of Salmonella Enteritidis PT 30 in almond orchard soils

Aims:  To evaluate factors potentially contributing to the long-term persistence of Salmonella enterica serovar Enteritidis phage type (PT) 30 in an almond orchard. Methods and Results:  Surface and subsurface soil temperatures, and air temperatures in a radiation shelter, were recorded during a 12-month period, and were used to identify relevant storage temperatures (20 or 35°C) for microcosms of two different soil types (clay and sandy loams) with moisture levels near saturation or near field capacity. Salmonella Enteritidis PT 30 was inoculated into the microcosms at 6 log CFU g⁻¹ dry weight. Between 14 and 180 days of incubation, counts of S. Enteritidis PT 30 decreased rapidly at 35°C and were significantly different (P < 0·05) from counts at 20°C, regardless of the soil type or moisture level. Salmonella was detected by enrichment of 10-g samples from all microcosms after 180 days of incubation at 20°C, but from none of the microcosms held at 35°C. To measure the potential for the growth of S. Enteritidis PT 30 in clay loam soil, an aqueous extract of almond hulls (containing 1·6% mono and disaccharides) or equivalent volume of water was added 7 days after inoculation. Significant (P < 0·05) growth of S. Enteritidis PT 30 was observed within 8 or 24 h of adding hull extract, but not water, to soil. Conclusions:  Opportunities may exist for S. Enteritidis PT 30 to survive for an extended time in almond orchard soils and to grow in these soils where hull nutrients are released. Significance and Impact of the Study:  Temperature has a significant impact on the long-term survival of S. Enteritidis PT 30 in soil, and nutrients leached from almond hulls may result in Salmonella growth. These factors should be considered in the design of Good Agricultural Practices for almonds.     

Growth and survival of cowpea rhizobia in bauxitic silt loam and sandy clay loam soils

Survival of 4 cowpea Rhizobium strains, IRC291, MI-50A, JRW3 and JRC29, in two soil types (bauxitic silt loam and sandy clay loam) undergoing drying at 30°C and 37°C was examined. While all strains except JRW3 showed a general pattern of increase in their numbers during the first 3 weeks in sterile soils, none of the strains showed any increase in their population in non-sterile soils. Cowpea rhizobia showed better survival in non-sterile bauxitic silt loam than in clay loam soils at 30°C. However, the long-term survival (examined up to 6 months) of rhizobia in both soils was poor at 37°C as compared to 30°C. We also found that cowpea rhizobia survived better in soils undergoing drying than in moist soils at 30°C. Our results suggest that (a) cowpea rhizobia survived better in bauxitic silt loam than in clay loam soil and (b) the low indigenous cowpea rhizobial population in Jamaican soils may be due to their poor long-term survival and weak saprophytic competence.     

Soil types with different texture affects development of Rhizoctonia root rot of wheat seedlings

The effect of different soil textures, sandy (97.5% sand, 1.6% silt, 0.9% clay), loamy sand (77% sand, 11% silt, 12% clay) and a sandy clay loam (69% sand, 7% silt, 24% clay), on root rot of wheat caused by Rhizoctonia solani Kühn Anastomosis Group (AG) 8 was studied under glasshouse conditions. The reduction in root and shoot biomass following inoculation with AG-8 was greater in sand than in loamy sand or sandy clay loam. Dry root weight of wheat in the sand, loamy sand and sandy clay loam soils infested with AG-8 was 91%, 55% and 28% less than in control uninfested soils. There was greater moisture retention in the loamy sand and sandy clay loam soils as compared to the sand in the upper 10–20 cm. Root penetration resistance was greater in loamy sand and sandy clay loam than in sand. Root growth in the uninfested soil column was faster in the sand than in the loamy sand and sandy clay loam soils, the roots in the sandy soil being thinner than in the other two soils. Radial spread of the pathogen in these soils in seedling trays was twice as fast in the sand in comparison to the loamy sand which in turn was more than twice that in the sandy clay loam soil. There was no evidence that differences among soils in pathogenicity or soil spread of the pathogen was related to their nutrient status. This behaviour may be related to the severity of the disease in fields with sandy soils as compared to those with loam or clay soils. This revised version was published online in June 2006 with corrections to the Cover Date.     

The allelopathic potential of alfalfa root medicagenic acid glycosides and their fate in soil environments

Summary The allelopathic effect of alfalfa (Medicago media Pers.) and red clover (Trifolium pratense L.) root saponins on winter wheat seedling growth and the fate of these chemicals in soil environments were studied. Seed germination, seedling and test fungus growth were suppressed by water and by alcohol extracts of alfalfa roots, and by crude saponins of alfalfa roots, indicating that medicagenic acid glycosides are the inhibitor. Powdered alfalfa roots inhibited wheat seedling growth when added to sand. At concentrations as low as 0.25% (w/w) the root system was completely destroyed whereas seedling shoots suffered little damage. Red clover roots caused some wheat growth inhibition when incorporated to sand, but their effect was much lower than in the alfalfa root treatment. Soil textures had a significant influence on the inhibitory effect of alfalfa roots. The inhibition of seedling growth was more pronounced on light than on heavy soils. This was attribted to the higher sorption of inhibitors by heavy soils. Incubation of alfalfa roots mixed into loose sand, coarse sand, loamy sand and clay loam for a period of 0–8 days resulted in decreased toxicity to bothT. viride and wheat seedlings. This decrease occurred more quickly in heavier soils than in loose sand, due to the hydrolysis of glycosides by soil microorganisms. Soil microbes were capable of detoxifying medicagenic acid glycosides by partial hydrolysis of sugar chain to aglycone. These findings illustrate the importance of medicagenic acid glycosides as an inhibitor of wheat seedling growth, and of their fate in different soil environments.     

A new formulation system for the application of biocontrol fungi to soil

A new biocontrol formulation system was devised that does not require sterile conditions during preparation. It involves mixing vermiculite and powdered wheat bran with wet or dry fermentor biomass of Trichoderma spp. or Gliocladium virens, moistening with 0.05 N HCl, and drying the mixture. Before application to soil, the preparation (VBA‐FB) is activated by re‐moistening with 0.05 N HCl and incubated at room temperature for 2–3 days to stimulate development of young hyphae of the biocontrol fungus. Populations of biocontrol fungi proliferated to greater than 10⁷ colony‐forming units (cfu) per g of soil when activated VBA‐FB was added to soil. In soil artificially infested with Rhizoctonia solani, seven isolates of the 14 studied added as VBA‐FB reduced survival and 12 reduced saprophytic growth of the pathogen. Of these, two isolates of T. hamatum (TRI‐4, Tm‐23) and one of T. harzianum (Th‐87) were the most effective. Preparations formulated with either wet or dry biomass effectively reduced pathogen survival, but activated VBA‐FB was more effective than non‐activated VBA‐FB. Storage of VBA‐FB at 25°C for 24 weeks before activation reduced viability of isolates considerably more than storage at 5°C for 24 weeks. In addition, VBA‐FB stored at 5°C before activation more effectively reduced survival of R. solani than VBA‐FB stored at 25° C. Survival of R. solani was reduced by activated VBA‐FB applied to several soil types (sandy loam, sandy clay loam, clay). Some nitrogen fertilizers increased the efficacy of VBA‐FB preparations of several isolates.     

The inhibition of seedling growth by crop residues in soil inoculated withPenicillium urticae Bainer

Summary Laboratory experiments were conducted to determine the effects of crop residues, without and withPenicillium urticae Bainer inoculation, on growth of wheat seedlings in soil. Fifty grams of Sharpsburg silty clay loam soil, containing 1% by weight of incorporated alfalfa, sorghum and corn stover residue, were placed in petri dishes, autoclaved, wetted to 40% moisture, and incubated at 24°C. for periods of 2, 3, and 4 weeks. One-half of the petri dishes were inoculated withP. urticae. Germination and seedling-shoot measurements were taken after 7 days of growth.The results of this study showed that (1) inoculation of soil generally reduced seedling height regardless of the residue treatment; (2) inoculation of soil containing corn and sorghum residues resulted in greater tissue production but reduced height of seedlings as compared to non-inoculated soils; and (3) in the absence of residues, the inoculated control soils were a better growth medium for wheat seedlings than were the non-inoculated control soils. In addition, alfalfa residues, especially in the presence ofP. urticae, were strongly inhibitory to the wheat seedlings, causing curling and reduced wheat-seedling root growth.Joint contribution from University of Nebraska and Soil and Water Conservation Research Division, Agricultural Research Service, U.S. Department of Agriculture, and Nebraska Agricultural Experiment Station, Lincoln, Nebraska, cooperating. Published with the approval of the Director as Paper No. 1242, Journal Series, Nebraska Agricultural Experiment Station.     

Effects of constant and fluctuating soil temperature on growth,development and nutrient uptake of maize seedlings

Summary The effect of constant and fluctuating soil temperature and two soil moisture regimes on the growth, development, transpiration and nutrient uptake by maize seedlings was studied in a greenhouse investigation. The constant root temperatures were maintained at 30, 34, 35, 36, 37, and 38°C for both 250 and 750 cm of soil moisture suctions. The fluctuating root temperature, for 250 cm of soil moisture suction only, of 30–35, 30–39, 30–40, 30–45 and 30–48°C were maintained to simulate the soil temperature regime under field conditions. The constant root temperature of 35°C and fluctuating temperature between 30–40°C significantly decreased the shoot and root growth and transpiration rate. On the average, there was 1.3 and 0.7 g decrease in fresh shoot weight and 0.36 and 0.30 g in fresh root weight per degree increase in root temperature for 250 and 750 soil moisture suction, respectively. In general, the effect of high soil moisture suction on maize seedlings was more severe when at high root temperature. The shoot and root concentration of N, P, and K decreased while that of B increased with increase in root temperature. The root concentration of Zn also decreased with increase in root temperature.     

Survival of Phytophthora cinnamomi in Buried Eucalyptus Roots

Colonization and survival of Phytophthora cinnamomi in roots was tested in 3 months old, axenically grown seedlings of Eucalyptus maculata (field resistant) and E. sieberi (susceptible). The roots were inoculated, then one week later were excised and buried in three non-sterile, conducive soils; a lateritic gravel, an infertile duplex soil, a loamy sand as well as in a fertile, suppressive krasnozem. Pathogen viability, percentage root colonization and chlamydospore numbers were examined at matric potentials of ?1/3, ?5 and ?10 bar after periods of 10, 100 and 200 days at 21°C. At 10 days, survival was 100% in the form of mycelium and the only significant difference was between the two Eucalyptus species. At 100 days survival was solely due to chlamydospores, but the pathogen was viable in all inoculated roots and at each matric potential. At 200 days soils had dried to less than ?10 bars and the pathogen failed to survive. No significant differences were found between the two pathogen isolates but significant differences were obtained between the susceptible and field resistant Eucalyptus species. Pathogen viability, percentage root colonization and chlamydospore number were highly correlated with soil types and matric potential. These components declined with decreasing soil matric potential. The Krasnozem was only suppressive at relatively high soil matric potentials (?1/3 bar). At lower values (?5, ?10 bar) survival of the pathogen, chlamydospore numbers and percentage colonization of the roots in the Krasnozem were comparable with that of the 3 conducive soils tested. Chlamydospores were present, but in low numbers in roots buried in the suppressive soil at ?1/3 bar.     

Degradation of Metolachlor in Tobacco Field Soil

The extensive use of metolachlor to control weeds in tobacco fields in China has aroused concern about its environmental fate. The aim of this study was to investigate the degradation and residue fate of metolachlor in tobacco field soil (silt loam) under laboratory and field conditions. In laboratory experiments, metolachlor in bulk soil exhibited fast degradation in a temperature range from 10 to 35°C and a soil moisture level of 20–80%, with half-lives (T_1/2) from 66.7 to 28.8 days. The degradation rate of metolachlor decreased as the application dose increased. Owing to higher microbial populations and enzymatic activities, metolachlor rapidly dissipated in rhizosphere soil as compared to bulk soil. Field persistence of metolachlor was evaluated in the same soil during the tobacco (Nicotiana tabacum K326) growing season in 2012 and 2013. The dissipation of metolachlor followed the first-order kinetics and its T_1/2 values were 11.7–13.5 days in soil and 9.0–9.6 days in green tobacco leaves, respectively. At harvest time, the residual levels of metolachlor in soil and green tobacco leaves were in the range of 0.626–1.623 and 0.083-0.481 mg kg^?1, respectively. These findings might have practical implications for the fate of metolachlor residue in tobacco fields. Environmental factors, especially temperature and moisture, should be considered in combination with the appropriate application dose of metolachlor for achieving satisfactory weed-control efficacy, reducing runoff, and minimizing effects on environmental quality.     

Biotic and abiotic factors affecting stability of Beauveria bassiana conidia in soil

Beauveria bassiana conidia were stored in sterile and nonsterile soil under various temperature, relative humidity, soil water content, and pH regimes. Survival of the conidia was primarily dependent on temperature and soil water content. Conidia half-lives ranged from 14 days at 25°C and 75% water saturation to 276 days at 10°C and 25% water saturation. Conidia held at ?15°C exhibited little or no loss in viability regardless of water content, relative humidity, or pH. Conidia were not recoverable after 10 days from soils held at 55°C. Conidia survival in nonsterile soil that was amended with carbon sources, nitrogen sources, or combinations of carbon and nitrogen was greatly decreased and loss was often complete in less than 22 days whereas sterile soil treated in the same manner showed dramatic increases in number, demonstrating that B. bassiana is capable of growth in sterile soil. The obvious fungistatic effect in amended nonsterile soils was possibly related to Penicillium urticae which was routinely isolated from the soils and is shown to produce a water-soluble inhibitor of B. bassiana. The fungistatic effect was shown to be an active inhibition rather than due to competition.     

Root growth of subalpine and montane Eucalyptus seedlings at low soil temperatures

 This study examines the effect of different soil temperatures on root growth in seedlings of Eucalyptus pauciflora Sieber ex Sprengel subsp. pauciflora and Eucalyptus nitens (Deane & Maiden) Maiden. Seedlings were grown in a glasshouse in pots containing soil. Pots were held in water baths maintained at 3, 7 or 13°C, whilst shoots were exposed to ambient glasshouse temperatures. The experiments were designed to separate direct effects of soil temperature from effects due to differences in seedling size. In the first experiment, seedlings were grown to constant height (25 cm for both species), in the second to constant time (100 days for E. pauciflora and 64 days for E. nitens) and in the third experiment seedlings were transferred between soil temperatures. The rate of growth of both species increased with increasing soil temperature. E. nitens grew faster than E. pauciflora at 7 and 13°C, but E. pauciflora grew faster than E. nitens at 3°C. The rate of browning of roots increased with decreasing soil temperature and at a faster rate in E. nitens than E. pauciflora. Root length was highly correlated to root mass within diameter and colour classes (r² > 0.7). However, brown roots were heavier than white roots. Consequently, changes in root mass did not reflect changes in root length when the proportion of brown to white root also changed. For example, at a constant height of 25 cm at 3°C, E. nitens had greater root mass but lesser root length than E. pauciflora. E. pauciflora at 3°C grew faster, and had more root length and less brown roots than E. nitens. This supports the argument that E. pauciflora is better adapted than E. nitens to survive and grow at lower soil temperatures. Received: 16 December 1996 / Accepted: 2 April 1997     

Environmental factors affecting seed germination of gray birch (Betula populifolia) collected from abandoned anthracite coal mine spoils in northeast Pennsylvania

Germination of gray birch (Betula populifolia) seed collected from anthracite mine spoils in northeastern Pennsylvania was studied. Environmental conditions of the spoil banks are such that high mortality may occur at seed and germination stages because of low moisture availability and thermal stress. The mine spoil banks are harsh environments with respect to key seed germination factors: percent soil moisture as low as 1.8% and soil surface temperatures reaching 59°C. In the field, gray birch typically germinated in mid-April prior to severe environmental stress. Trends in germination success were inversely related to rising soil temperature and decreasing soil moisture availability. Although seeds were capable of survival and germination under laboratory conditions of constant temperatures in excess of 55°C, dramatic decline in germination was observed under fluctuating temperature regimes likely to be experienced in the field. No germinations occurred under fluctuating temperatures in excess of 30°C. Germinations in the field were seen to end after mid-June when substrate temperatures exceeded 30°C.     

Effect of cyclic wetting and drying of a soil on root hair growth of maize roots

The objective of this study was to investigate the effect of cyclic soil wetting and drying on maize (Zea mays L.) root hair growth. Three soils, Chalmers silty clay loam (Typic Haplaquolls), Raub silt loam (Aquic Argiudolls) and Aubbeenaubbee sandy loam (Aric Ochraqualfs) and two soil moisture contents, −175 (M₀) and −7.5 kPa (M₁), were used to study root hair growth in a controlled-climate chamber. Increasing soil moisture after 7d from M₀ and M₁ resulted in a cessation of root hair growth behind the root cap while drying the soil after 7d from M₁ and M₀ promoted root hair growth on new but not old or existing roots. By maintaining liquid continuity under cyclic wetting and drying of a soil, root hairs may be of far greater significance to the nutrition of the plant than originally thought. Journal Paper No. 11023, Purdue Univ. Agric. Exp. Stn., W. Lafayette, IN 47907. Contribution from the Dep. of Agron.     

Water absorption by seeds as affected by soil temperature

Summary Water absorption by seeds of wheat and corn was studied over a temperature range of 5 to 35°C spaced at 5°C in sandy loam soil with moisture levels of 10 and 15 per cent. With increasing temperature, water absorption increased. The difference in water absorption due to moisture levels under study was not appreciable. Irrespective of treatments, a rapid initial absorption was followed by a tapering-off period of slow absorption.     

Impact of soil type, moisture, and depth on swede midge (Diptera: Cecidomyiidae) pupation and emergence

Contarinia nasturtii (Kieffer) (Diptera: Cecidomyiidae), a common insect pest in Europe and a new invasive pest in North America, causes severe damage to cruciferous crops. Currently, many counties in Canada and the United States in which C. nasturtii has not been previously reported are at risk of being infested by C. nasturtii. Effectiveness of chemical control is limited, especially under high population pressure in fields, because the cryptic habits of C. nasturtii protect them from insecticidal sprays. Alternative management strategies against C. nasturtii that are needed to protect crucifers and soil management for the pupal stage were studied as one option. Six different types of soils (loam fine sand, fine sand, clay loam, muck, Chenango shale loam, and silt loam soil) were collected from commercial cabbage fields in New York and studied in the laboratory for their impact on C. nasturtii pupation and emergence. The results indicated that extremely wet or dry soils significantly hindered C. nasturtii emergence, regardless of soil type, suggesting that soil type alone may not be a major factor regulating C. nasturtii abundance. Optimal moisture content for C. nasturtii emergence varied for different soils. Most C. nasturtii pupated within the top 1 cm of soil. Furthermore, we found that >5 cm of soil cover effectively reduced the emergence number and delayed the time of emergence. Based on these results, we suggest that soil manipulation (moisture content and cultivation practices) should be considered as an important component in an overall integrated pest management program for C. nasturtii.     

Influence of soil factors,fertilizers and manures on pathogenicity ofRhizoctonia solani onVigna species

Rhizoctonia solani caused maximum mortality of mung bean seedlings at 20°C, and the disease incidence decreased with increase of temperature; 30° was optimum for mycelial growth of the fungusin vitro. The fungus grew best in nutrient broth of pH 5.5 but infected mung bean and pea seedlings more severely in neutral and alkaline river sand than in the sand adjusted to acidic reaction. The disease incidence was higher in adequately moist sandy loam and less in soil under moisture stress. Incidence of cowpea seedling rot was higher in heavy-textured loam and silt loam soils than in light-textured sandy- and loamy sand. Addition of montmorillonite and kaolinite in the sandy soil increased the disease incidence, but these clays reduced fungus growth in culture. More seedling rot occurred in the sandy soil fertilized with urea, potassium nitrate, monocalcium phosphate, or potassium dihydrogen phosphate while soil application of ammonium nitrate, potassium chloride, or potassium sulphate decreased the disease. In tests with combined soil application of N (as urea), P (as monocalcium phosphate) and K (as potassium chloride), disease incidence was more in all combinations having P. Among the six micronutrients tested, only boron reduced the disease incidence significantly both in presence and absence of NPK fertilizers. Farm-yard manure and biogas sludge aggravated seedling rot but their water extracts decreased it. Humic acid, extracted from farm-yard manure, increased the disease incidence but was inhibitory to fungus growth in culture. Green manure also resulted in more disease.     

The mutual growth ofArthrobacter globiformis andPseudomonas fluorescens in gamma-sterilized soil

Summary Arthrobacter globiformis andPseudomonas fluorescens were grown separately and together in flasks containing soil sterilized by gamma-irradiation. If the soil was held at 60% of its waterholding capacity (W.H.C.) and 25°C the viable cell yield of the 2 organisms in pure culture was approximately equal in 4 days while in mixed culture neither organism predominated and the total yield was about the same as in either pure culture. The pseudomonad dominated the mixed cultures when the incubation temperature was 10°C, when the soil was saturated and when glucose was added to the soil. The arthrobacter dominated the mixed culture when soil moisture was decreased to 40% W.H.C. The 10-day oxygen uptake by the 2 organisms grown together in sterile soil was much less than that shown by an inoculum prepared from a soil dilution.A. globiformis took up less oxygen when grown in the sterile soil than didP. fluorescens. In these short-term experimentsA. globiformis did not demonstrate competitive capabilities which would explain its more frequent occurrence in unamended soil thanP. fluorescens. This work was supported by grant A-1702 from the National Research Council of Canada, and by assistance from Ontario Department of Agriculture and Food.     

The blue pigment of Corynebacterium insidiosum

Summary The alfalfa wilt bacterium, Corynebacterium insidiosum, produces a water-insoluble blue substance which accumulates extracellularly. A number of factors (among them strain variation, temperature, p_H, nutrition, crowding) have a considerable influence upon pigment production. Proper control of these factors led to a method for large-scale cultivation of C. insidiosum under conditions of good pigmentation.On the bases of absorption spectrum, solubility characteristics, and the properties of crystalline acetyl and benzoyl derivatives, the C. insidiosum pigment is believed to be identical with indigoidine—a pigment of unknown composition previously reported in Pseudomonas indigofera.