Chromosomal polymorphism of the unique Baikal deep-water population of Sergentia flavodentata (Diptera, Chironomidae) from the region of hydrothermal venting

The subject of this study is chromosomal polymorphism of a population of Baikal endemic species Sergentia flavodentata (Diptera, Chironomidae) from the Frolikh Bay region of hydrothermal venting at a depth of 420-430 m. In 35-67% of larvae, six heterozygous inversions were found to be preserved for 13 years (materials of 1991, 1994, 1996, 1999, 2003). The number of zygotic combinations reached 14; 0.5-0.7 inversions per individual was observed. It is suggested that stable chromosomal polymorphism characteristic of this species is nonrandom, being a mechanism of the population adaptation to the specific conditions of hydrothermal venting community based on bacterial biochemosynthesis.     

Speciation and chromosomal evolution of the Baikalian endemic chironomids of the genus Sergentia Kief. (Diptera, Chironomidae): Karyotype divergence and chromosomal polymorphism in the populations of eurybathic species Sergentia flavodentata Tshern. and littoral species Sergentia baicalensis Tshern

Specific karyotype structure and chromosomal polymorphism was investigated in the populations of the Baikalian endemic chironomid species, eurybathic Sergentia flavodentata Tshernovskij, 1949 and littoral Sergentia baicalensis Tshernovskij, 1949. In addition to two fluctuating homozygous inversions in arms A and E, both species were characterized by species-specific karyotype features, namely, nucleolar organizer in the region 1 of chromosome IV in S. flavodentata, and inversion in arm F in S. baicalensis. Moreover, S. baicalensis demonstrated the presence of intraspecific population polymorphism. The populations differing in the presence of secondary overlapping inversion in arm A were found. The highest number of chromosomal rearrangements (7) was detected in S. flavodentata. Most of these rearrangements (six) were found in the population from the underwater thermal spring at a depth of 420 to 430 m (Northern Baikal, Frolikha Bay). In the populations from Middle and Southern Baikal, a rare pericentric inversion in chromosome I was described. In S. baicalensis, in addition to two common heterozygous inversions in arms C and F, disturbance of homologous pairing in different regions of the remaining arms were often detected. Stable chromosomal polymorphism preserved during 13 years in the population of S. flavodentata from the region of hydrothermal venting, serves as an evidence of high genetic plasticity of the species, which favors successful colonization of different Baikal depths and biotopes. Original Russian Text ? V.I. Proviz, 2008, published in Genetika, 2008, Vol. 44, No. 9, pp. 1191–1202.     

Speciation and chromosomal evolution of the Baikalian endemic chironomids of the genus Sergentia Kief. (Diptera, Chironomidae): karyotype divergence and chromosomal polymorphism in the populations of eurybathic species Sergentia flavodentata Tshern. and littoral species Sergentia baicalensis Tshern

Specific karyotype structure and chromosomal polymorphism was investigated in the populations of the Baikalian endemic chironomid species, eurybathic Sergentia flavodentata Tshernovskij, 1949 and littoral Sergentia baicalensis Tshernovskij, 1949. In addition to two fluctuating homozygous inversions in arms A and E, both species were characterized by species-specific karyotype features, namely, nucleolar organizer in the region 1 of chromosome IV in S. flavodentata, and inversion in arm F in S. baicalensis. Moreover, S. baicalensis demonstrated the presence of intraspecific population polymorphism. The populations differing in the presence of secondary overlapping inversion in arm A were found. The highest number of chromosomal rearrangements (7) was detected in S. flavodentata. Most of these rearrangements (six) were found in the population from the underwater thermal spring at a depth of 420 to 430 m (Northern Baikal, Frolikha Bay). In the populations from Middle and Southern Baikal, a rare pericentric inversion in chromosome I was described. In S. baicalensis, in addition to two common heterozygous inversions in arms C and F, disturbance of homologous pairing in different regions of the remaining arms were often detected. Stable chromosomal polymorphism preserved during 13 years in the population of S. flavodentata from the region of hydrothermal venting, serves as an evidence of high genetic plasticity of the species, which favors successful colonization of different Baikal depths and biotopes.     

Individual inversions or their combinations: which is the main selective target in a natural population of Drosophila subobscura?

It is generally accepted that chromosomal inversions have been key elements in adaptation and speciation processes. In this context, Drosophila subobscura has been, and still is, an excellent model species due to its rich chromosomal polymorphism. In this species, many analyses from natural populations have demonstrated the adaptive potential of individual inversions (and their overlapped combinations, the so‐called arrangements). However, little information is available on the evolutionary role of combinations generated by inversions located in homologous and nonhomologous chromosomes. The aim of this research was to ascertain whether these combinations are also a target for natural selection. For this objective, we have studied the inversion composition of homologous and nonhomologous chromosomes from a D. subobscura sample collected in a well‐studied population, Mount Avala (Serbia). No significant deviation from H‐W expectations was detected, and when comparing particular karyotypic combinations, likelihood ratios close to 1 were obtained. Thus, it seems that for each pair of homologous chromosomes inversions no deviation from randomness was detected. Finally, no linkage disequilibrium was observed between inversions located in different chromosomes of the karyotype. For all these reasons, it can be assumed that, at the cytological level, the individual inversions rather than their combinations in different chromosomes are the main target of selection.     

Karyotype of <Emphasis Type="Italic">Glyptotendipes glaucus</Emphasis> (Diptera,Chironomidae) from Lake Kotokel (the Lake Baikal Basin)

The karyotype and chromosomal polymorphism of Glyptotendipes glaucus from Lake Kotokel were examined. The degree of the chromosomal polymorphism was rather low, constituting 2.2% heterozygotes and 0.02 inversions per individual. A single glaA4 inversion banding sequence, new to the species, was found in the 46 larvae studied.     

Speciation and chromosomal evolution of the Baikalian endemic chironomids of the genus Sergentia Kief. (Diptera, Chironomidae): Karyotype divergence and chromosomal polymorphism in the populations of deep-water species Sergentia nebulosa Linevitsh et al. and Sergentia assimilis Proviz V. et Proviz L.

Specific karyotype structure and chromosomal polymorphism was investigated in the populations of Sergentia nebulosa Linevitsh et al., 1984 and Sergentia assimilis Proviz V. et Proviz L., 1999, the deep-water endemic chironomid species (Diptera, Chironomidae) from the Baikal Lake. The distinguishing feature of the karyotypes of these species, compared to the other Baikalian Sergentia, is well-developed nucleolus in region 6 of arm C. Both species display the presence of interspecific population polymorphism, determined by the structure of this arm. In some populations, chromosome regions from 4 to 6 contain a homozygous inversion, which is absent in the other populations. The distinguishing karyotype feature of S. assimilis, which shares fluctuating homozygous inversions with the other species, is the presence of two species-specific homozygous inversions. These are the secondary overlapping inversion in arm A, regions 2 to 7, and the inversion in regions 4 to 10 of arm G. Both species of interest contain nucleolus organizer in region 10 of arm G. In populations of S. nebulosa, six heterozygous inversions localized in arms A, B, C, F, and G were discovered. The highest number of heterozygotes for inversions (71%) was observed in the population from Southern Baikal. In arm B of S. assimilis, one heterozygous inversion and heterozygosity for nucleolus organizer in the chromosome region 16 was detected. Chromosomal evolution of Baikalian Sergentia, and the role of inversion polymorphism in the population adaptation is discussed. Original Russian Text ? V.I. Proviz, 2008, published in Genetika, 2008, Vol. 44, No. 12, pp. 1627–1637.     

Chromosomal polymorphism in two species of the guarani group of drosophila

Summary Studies of chromosomal polymorphism in natural populations of D. guaramunu and D. griseolineata in Rio Grande do Sul, Brazil, confirmed and extended previous findings in these species. The more common D. guaramunu is much more polymorphic than its closest but less common relative D. griseolineata. In the former species, the frequencies of four inversions showed differences from locality to locality, and five inversions of the same species showed temporal changes in the population of Bexiga. It was not possible to correlate the differences with any particular factor in the environment, though the temporal changes were perhaps due to seasonal climatic cycles.Inversion heterosis was not evident in either species — instead, inversion Ee of D. guaramunu was found to be less frequent than expected on the basis of the Hardy-Weinberg equilibrium in the localities of Emboaba, Bexiga and Feliz. The implications of these findings are discussed.Fellow of the Conselho Nacional de Pesquisas.     

Chromosomal inversions and ecotypic differentiation in Anopheles gambiae: the perspective from whole‐genome sequencing

The molecular mechanisms and genetic architecture that facilitate adaptive radiation of lineages remain elusive. Polymorphic chromosomal inversions, due to their recombination‐reducing effect, are proposed instruments of ecotypic differentiation. Here, we study an ecologically diversifying lineage of Anopheles gambiae, known as the Bamako chromosomal form based on its unique complement of three chromosomal inversions, to explore the impact of these inversions on ecotypic differentiation. We used pooled and individual genome sequencing of Bamako, typical (non‐Bamako) An. gambiae and the sister species Anopheles coluzzii to investigate evolutionary relationships and genomewide patterns of nucleotide diversity and differentiation among lineages. Despite extensive shared polymorphism and limited differentiation from the other taxa, Bamako clusters apart from the other taxa, and forms a maximally supported clade in neighbour‐joining trees based on whole‐genome data (including inversions) or solely on collinear regions. Nevertheless, F_ST outlier analysis reveals that the majority of differentiated regions between Bamako and typical An. gambiae are located inside chromosomal inversions, consistent with their role in the ecological isolation of Bamako. Exceptionally differentiated genomic regions were enriched for genes implicated in nervous system development and signalling. Candidate genes associated with a selective sweep unique to Bamako contain substitutions not observed in sympatric samples of the other taxa, and several insecticide resistance gene alleles shared between Bamako and other taxa segregate at sharply different frequencies in these samples. Bamako represents a useful window into the initial stages of ecological and genomic differentiation from sympatric populations in this important group of malaria vectors.     

Chromosome arm‐specific patterns of polymorphism associated with chromosomal inversions in the major African malaria vector,Anopheles funestus

Chromosomal inversions facilitate local adaptation of beneficial mutations and modulate genetic polymorphism, but the extent of their effects within the genome is still insufficiently understood. The genome of Anopheles funestus, a malaria mosquito endemic to sub‐Saharan Africa, contains an impressive number of paracentric polymorphic inversions, which are unevenly distributed among chromosomes and provide an excellent framework for investigating the genomic impacts of chromosomal rearrangements. Here, we present results of a fine‐scale analysis of genetic variation within the genome of two weakly differentiated populations of Anopheles funestus inhabiting contrasting moisture conditions in Cameroon. Using population genomic analyses, we found that genetic divergence between the two populations is centred on regions of the genome corresponding to three inversions, which are characterized by high values of F_ST, absolute sequence divergence and fixed differences. Importantly, in contrast to the 2L chromosome arm, which is collinear, nucleotide diversity is significantly reduced along the entire length of three autosome arms bearing multiple overlapping chromosomal rearrangements. These findings support the idea that interactions between reduced recombination and natural selection within inversions contribute to sculpt nucleotide polymorphism across chromosomes in An. funestus.     

Chromosomal breaks and aberrations observed after applying ultrasound to Drosophila subobscura

The purpose of this work was to investigate the potential of ultrasound for inducing chromosomal breaks and aberrations by using salivary glands as material for the in vitro experiment and first instar larvae for the in vivo experiments. Drosophila subobscura, Küsnacht standard/standard strain was used. Ultrasound was applied at 0.3 Wcm^–2 at 40 kHz for a period of sixty minutes. Following the in vitro ultrasonication, chromosomal breaks and alterations in the staining by orcein were observed. In the in vivo experiments, the offspring of the treated parents showed inversions and/or transpositions at a frequency of 3 per cent. These aberrations were randomly distributed in the five long chromosomes, and it is noted that none of these inversions was similar to any of the approximately sixty inversions classified for this species (Krimbas & Loukas, 1980).     

Genetic Polymorphism of a Pelagic Fish Species,Little Baikal Oilfish <Emphasis Type="Italic">Comephorus dybowski</Emphasis>, Deduced from Analysis of Microsatellite Loci

Intraspecific genetic polymorphism of a Baikal Lake endemic, little Baikal oilfish (Comephorus dybowski Korotneff, 1905), was evaluated based on microsatellite analysis. Six microsatellite loci designed for the European sculpin, Cottus gobio, were used. Each locus was tested using 25 to 32 individuals from each of the Baikal basins (southern, middle, and northern). Analysis of genetic differentiation (F _ST and R _ST) revealed no statistical significant differences between the samples. The data showed that the target species was represented by a single panmictic stable population.__________Translated from Genetika, Vol. 41, No. 7, 2005, pp. 919–924.Original Russian Text Copyright © 2005 by Teterina, Sukhanova, Bogdanov, Anoshko, Kirilchik.     

Climatic adaptation of chromosomal inversions in <Emphasis Type="Italic">Drosophila subobscura</Emphasis>

Drosophila subobscura is a species with a rich chromosomal polymorphism which is adaptive to different climatic conditions. Five samples of the Font Groga population (Barcelona, Spain) were sampled in autumn during 5 consecutive years (2011–2015) to obtain their inversion chromosomal polymorphism, and climatic data of several meteorological variables were also collected. The aim was to analyze the adaptive potential of inversions with regard to climatic variables, being the most relevant: mean temperature (T_mean), maximum temperature (T_max), minimum temperature (T_min), humidity (Hm) and rainfall (Rf). As expected, no significant variation in inversion frequencies were detected over this short period of time. However, from a climatic point of view it was possible to differentiate ‘warm’ and ‘dry’ from ‘cold’ and ‘humid’ samples. The joint study of maximum (T_max) and minimum (T_min) temperatures was a key element to understand the effect on adaptation of many inversions. It was also observed that temperature had to be considered in conjunction with humidity and rainfall. All these factors would condition the biota of D. subobscura habitat, and chromosomal inversions could provide an adaptive response to it.     

Relationships between population size and loss of genetic diversity: comparisons of experimental results with theoretical predictions

Preservation of genetic diversity is of fundamental concern toconservation biology, as genetic diversity is required for evolutionarychange. Predictions of neutral theory are used to guide conservationactions, especially genetic management of captive populations ofendangered species. Loss of heterozygosity is predicted to be inverselyrelated to effective population size. However, there is controversy asto whether allozymes behave as predicted by this theory. Loss of geneticdiversity for seven allozyme loci, chromosome II inversions andmorphological mutations was investigated in 23 Drosophilamelanogaster populations, maintained at effective population sizesof 25 (8 replicates), 50 (6), 100 (4), 250 (3) and 500 (2) for 50generations. Allozyme genetic diversity (heterozygosity, percentpolymorphism and allelic diversity), inversions and morphologicalmutations were all lost at greater rates in smaller than largerpopulations. Conservation concerns about loss of genetic diversity insmall populations are clearly warranted. Across our populations, loss ofallozyme heterozygosity over generations 0–24, 0–49 and25–49 did not differ from the predictions of neutral theory. Thetrend in deviations was always in the direction expected withassociative overdominance. Our results support the use of neutral theoryto guide conservation actions, such as the genetic management ofendangered species in captivity.     

Cytogenetic Features of Blackfly Wilhelmia paraequina Puri (Diptera: Simuliidae) from Armenia

Three blackfly Wilhelmia paraequina populations of Armenia (rivers Debet and Megriget, channel Megri) were studied. 2n = 6: IS + IIL, IIS + IL, IIIS + IIIL. Cytological maps of polytene chromosomes were constructed. High inversion polymorphism (95.63%) was observed, with 2.6 inversions per individual. Three inversions proved to be associated with male development: Y₁ was characterized by a combination of two heterozygous inversions, IIL-3 + IIL-1, while Y₂ had another combination of heterozygous inversions, IIL-5 + IIL-3. The X chromosome had a standard homozygous IIL band pattern. The populations were shown to be similar in autosomal polymorphism. A tendency for differentiation was observed with respect to frequencies and types of sex-linked inversions: the sex determination system was Y₁X–XX in the Debet and Megriget populations and Y₂X–XX in the channel (Megri) population. On the strength of these findings, one W. paraequina morphotype was assumed to involve two cytotypes, A (Debet and Megriget populations) and B (Megri population).     

Divergence of the polytene chromosome banding sequences as a reflection of evolutionary rearrangements of the genome linear structure

Banding sequences of five chromosomal arms (A, C, D, E, and F), accounting for about 70% of the total genome size in 63 Chironomus species, were used as markers to analyze divergence patterns of the linear genome structure during the evolution. The number of chromosomal breakpoints between the pairs of banding sequences compared served as a measure of divergence. It was demonstrated that the greater the divergence between the species compared, the higher the number of chromosomal breakpoints and the smaller the size of the conserved chromosomal segments. A banding sequences comparison in sibling species demonstrated a lower number of chromosomal breakpoints; the breakpoint number was maximum in a comparison of the banding sequences in the subgenera Chironomus and Camptochironomus. The use of the number of chromosomal breakpoints as a genome divergence measure provided establishment of phylogenetic relationships between 63 Chironomus species and discrimination of sibling species groups and cytocomplexes on a phylogenetic tree.Translated from Genetika, Vol. 41, No. 2, 2005, pp. 187–195.Original Russian Text Copyright © 2005 by Gunderina, Kiknadze, Istomina, Gusev, Miroshnichenko.     

A comparative cytogenetic study of five piranha species (Serrasalmus,Serrasalminae) from the Amazon basin

Cytogenetic studies were conducted on five piranha species belonging to the genus Serrasalmus, subfamily Serrasalminae (Serrasalmus altispinis, S. compressus, S. elongatus, S. manuelli, and S. spilopleura). All the species were collected in the Amazon basin: confluence of Negro and Solimõoes Rivers (CatalãoLake), Solimões River (Marchantaria Island – Camaleão Lake), Uatumã River (Hydroelectric Power Station of Balbina), and Pitinga River (Hydroelectric Power Station of Pitinga). All the five species possess 2n = 60 chromosomes with 5–12 subtelo- and acrocentric chromosomes bearing nucleolar organizer regions. A proximal C-band positive heterochromatin block was evident on the long arms of a medium-sized metacentric chromosome pair in all the analized species, thus making it a cytogenetic marker for the genus. It is hypothesized that 2n = 60 chromosomes represents a derived feature in terms of the chromosomal evolution of piranhas because the basal lineages possess 2n = 62. Both Robertsonian centric fusion and non-Robertsonian rearragements such as pericentric inversions seem implicated in the chromosomal evolution of this group.     

RFLP Analysis of the <Emphasis Type="Italic">FLOWERING LOCUS C</Emphasis> Gene in Six <Emphasis Type="Italic">Brassica</Emphasis> Species

The FLOWERING LOCUS C (FLC) gene controls the transition of arabidopsis plants to flowering following cold induction (vernalization). Time to flowering in annual and biennial species of Brassicaceae supposedly depends on the number of FLC copies. We analyzed DNA restriction fragment length polymorphism in six Brassica species with diploid (AA, BB, and CC) and allotetraploid (AABB, AACC, and BBCC) genomes using for a hybridization probe an FLC homolog previously cloned in our laboratory from B. juncea. The characteristic variations in the patterns of restriction fragments corresponded to the genomic composition of Brassica species and, in some cases, correlated with the timing of floral transition.__________Translated from Fiziologiya Rastenii, Vol. 52, No. 3, 2005, pp. 399–405.Original Russian Text Copyright © 2005 by Martynov, Khavkin.     

A karyological study of swamp and dry valley populations of Siberian fir (<Emphasis Type="Italic">Abies sibirica</Emphasis> Ledeb.)

The karyological data on populations of Siberian fir (Abies sibirica Ledeb.) growing in lowland swamp and dry valleys are given. The diploid set of both populations included 24 chromosomes (2n = 24). Polykaryogram analysis revealed seven pairs of metacentric and five pairs of submetacentric chromosomes. The revealed differences between the populations included the absolute length of chromosomes, number of nucleolar organizer regions, and number of nucleoli. Changed chromosome numbers (mixoploidy and aneuploidy) as well as chromosomal aberrations were recorded. For the first time, mitosis was studied in this species and anaphase/telophase aberrations were revealed. The population of Siberian fir growing under extreme conditions of lowland swamp featured the widest range of mutations.Translated from Izvestiya Akademii Nauk, Seriya Biologicheskaya, No. 1, 2005, pp. 23–29.Original Russian Text Copyright © 2005 by Sedelnikova, Pimenov.     

A comparative study of the chromosomal polymorphs in the incipient species of the Drosophila paulistorum complex

Ninety-six geographical strains distributed among the incipient species of the Drosophila paulistorum complex were examined cytologically, and the results obtained were correlated with available data on hybridization tests and chromosomal analysis. The complex was found to contain more than sixty-three different inversions, out of which thirty-two were 3rd chromosome configurations. This placed Drosophila paulistorum among the most chromosomally polymorphic species in the genus. The species differs from D. willistoni, in that a great number of inversions is concentrated in one of the chromosomes, as opposed to approximately equal distribution of inversions in the chromosomes of willistoni. — The data obtained in the course of this investigation seem to support the idea that either massive populations become isolated and then form new species, or that the newly forming species tend to retain some of their ancestral polymorphs which might present them with heterotic effects, gradually replacing them with more successful combinations as speciation progresses.The work reported in this article has been carried under Contract No. AT (30-1)-3096, U. S. Atomic Energy Commission.     

Population Structure of the Baikalian Amphipod <Emphasis Type="Italic">Gmelinoides fasciatus</Emphasis> (Stebbing)

Using the data on 71 individual sequences of the gene for the mitochondrial cytochrome-c-oxidase subunit one, molecular and phylogenetic characterization of the Baikalian amphipod, Gmelinoides fasciatus (Crustacea, Amphipoda), was performed. Interspecific polymorphism was demonstrated. Four main amphipod populations, Southeastern, Southwestern, Northern, and Central, were distinguished. A low level of genetic diversity typical of Southwestern population was revealed. For its explanation, the bottleneck hypothesis was proposed.__________Translated from Genetika, Vol. 41, No. 8, 2005, pp. 1108–1114.Original Russian Text Copyright © 2005 by Gomanenko, Kamaltynov, Kuzmenkova, Berenos, Sherbakov.