Relationship between body size and habitat complexity preference in age-0 and -1 year winter flounder Pseudopleuronectes americanus

The interaction between body size, habitat complexity and interstice width on habitat preference of age-0 and -1 year Pseudopleuronectes americanus was examined using continuous remote video observation. The habitat choices of juvenile P. americanus were recorded over a 6 h period in tanks with four treatments: bare sand, sand with low complexity cobble, sand with intermediate complexity cobble and sand with high complexity cobble. Both age-0 and -1 year fish preferred cobble to bare sand. Within cobble treatments, age-0 year fish preferred intermediate complexity cobble, with a 1.59 ratio of interstitial space to body width. The largest age-1 year fish (123-130 mm standard length, L(S) ) preferred low complexity cobble. While a significant preference was not detected, medium age-1 year fish (83-88 mm L(S) ) tended to select low complexity cobble, whereas small age-1 year fish (73-82 mm L(S) ) tended to select low and intermediate cobble, with an interstitial space to body width ratio of 1.05. For medium and large age-1 year fish, there was an increased selection of low complexity cobble, corresponding to larger interstitial space to body size ratios. This study indicates that juvenile P. americanus prefer complex habitat to unstructured habitat and that this preference is mediated by a relationship between fish body size and the size of structure interstices. These results contribute to the growing body of knowledge of complex habitat selection and drivers of habitat choice in flatfishes.     

Sex-Specific Selection and Sex-Biased Gene Expression in Humans and Flies

Sexual dimorphism results from sex-biased gene expression, which evolves when selection acts differently on males and females. While there is an intimate connection between sex-biased gene expression and sex-specific selection, few empirical studies have studied this relationship directly. Here we compare the two on a genome-wide scale in humans and flies. We find a distinctive “Twin Peaks” pattern in humans that relates the strength of sex-specific selection, quantified by genetic divergence between male and female adults at autosomal loci, to the degree of sex-biased expression. Genes with intermediate degrees of sex-biased expression show evidence of ongoing sex-specific selection, while genes with either little or completely sex-biased expression do not. This pattern apparently results from differential viability selection in males and females acting in the current generation. The Twin Peaks pattern is also found in Drosophila using a different measure of sex-specific selection acting on fertility. We develop a simple model that successfully recapitulates the Twin Peaks. Our results suggest that many genes with intermediate sex-biased expression experience ongoing sex-specific selection in humans and flies.     

Habitat selection and space use overlap between feral horses,pronghorn, and greater sage-grouse in cold arid steppe

Populations of feral horses (Equus ferus caballus) in the western United States have increased during the past decade, consequently affecting co-occurring wildlife habitat. Feral horses may influence 2 native wildlife species, greater sage-grouse (Centrocercus urophasianus; sage-grouse) and pronghorn (Antilocapra americana) through mechanisms of habitat alteration and competition. Wyoming, USA, contains the largest populations of pronghorn and sage-grouse of any state and also has the highest degree of range overlap between feral horses and these species. Consequently, the effects that horses may have on pronghorn and sage-grouse populations in Wyoming have implications at local, state, and population-wide levels. Managers need information concerning habitat selection and space use overlap among these species to develop appropriate management strategies; yet this information is absent for most feral horse management areas. To address this knowledge need, we attached global positioning system (GPS) transmitters to horses, pronghorn, and sage-grouse within the greater Bureau of Land Management–Adobe Town Herd Management Area in southern Wyoming and northern Colorado, USA, between 2017 and 2021 to evaluate habitat selection and space use of all species during 3 biologically relevant seasons: spring (Apr–Jun; sage-grouse breeding, nesting, and early-brood rearing; pronghorn late gestation and early parturition), summer (Jul–Oct; sage-grouse summer and late-brood rearing; pronghorn late parturition and breeding), and winter (Nov–Mar; non-breeding season). Feral horses selected flatter slopes and shorter mean shrub height across all seasons and were closer to water in spring and summer. Pronghorn habitat selection was similar to horses, but they also avoided oil and gas well pads year-round. During spring, sage-grouse selected greater herbaceous cover, flatter slopes, and areas farther from well pads. In summer, sage-grouse selected greater mean shrub height, flatter slopes, and were closer to water. In winter, sage-grouse selected flatter slopes and areas with greater vegetation production during the preceding summer. Our results indicate strong year-round overlap in space use between horses and pronghorn, whereas overlap between horses and sage-grouse is greatest during the summer in this region. Consequently, managers should recognize the potential for horses to influence habitat quality of pronghorn and sage-grouse in the region.     

Strong spatial segregation between wildcats and domestic cats may explain low hybridization rates on the Iberian Peninsula

The European wildcat (Felis silvestris silvestris) is an endangered felid impacted by genetic introgression with the domestic cat (Felis silvestris catus). The problem of hybridization has had different effects in different areas. In non-Mediterranean regions pure forms of wildcats became almost extinct, while in Mediterranean regions genetic introgression is a rare phenomenon. The study of the potential factors that prevent the gene flow in areas of lower hybridization may be key to wildcat conservation. We studied the population size and spatial segregation of wildcats and domestic cats in a typical Mediterranean area of ancient sympatry, where no evidence of hybridization had been detected by genetic studies. Camera trapping of wild-living cats and walking surveys of stray cats in villages were used for capture–recapture estimations of abundance and spatial segregation. Results showed (i) a low density of wildcats and no apparent presence of putative hybrids; (ii) a very low abundance of feral cats in spite of the widespread and large population sources of domestic cats inhabiting villages; (iii) strong spatial segregation between wildcats and domestic/feral cats; and (iv) no relationship between the size of the potential population sources and the abundance of feral cats. Hence, domestic cats were limited in their ability to become integrated into the local habitat of wildcats. Ecological barriers (habitat preferences, food limitations, intra-specific and intra-guild competition, predation) may explain the severe divergences of hybridization impact observed at a biogeographic level. This has a direct effect on key conservation strategies for wildcats (i.e., control of domestic cats).     

Rapid evolution of postzygotic reproductive isolation in stalk-eyed flies

We test the relative rates of evolution of pre- and postzygotic reproductive isolation using eight populations of the sexually dimorphic stalk-eyed flies Cyrtodiopsis dalmanni and C. whitei. Flies from these populations exhibit few morphological differences yet experience strong sexual selection on male eyestalks. To measure reproductive isolation we housed one male and three female flies from within and between these populations in replicate cages and then recorded mating behavior, sperm transfer, progeny production, and hybrid fertility. Using a phylogeny based on partial sequences of two mitochondrial genes, we found that premating isolation, postmating isolation prior to hybrid eclosion, and female hybrid sterility evolve gradually with respect to mitochondrial DNA sequence divergence. In contrast, male hybrid sterility evolves much more rapidly-at least twice as fast as any other form of reproductive isolation. Hybrid sterility, therefore, obeys Haldane's rule. Although some brood sex ratios were female biased, average brood sex ratio did not covary with genetic distance, as would be expected if hybrid inviability obeyed Haldane's rule. The likelihood that forces including sexual selection and intra- and intergenomic conflict may have contributed to these patterns is discussed.     

RAPID EVOLUTION OF ASYMMETRIC REPRODUCTIVE INCOMPATIBILITIES IN STALK‐EYED FLIES

The steps by which isolated populations acquire reproductive incompatibilities remain poorly understood. One potentially important process is postcopulatory sexual selection because it can generate divergence between populations in traits that influence fertilization success after copulation. Here we present a comprehensive analysis of this form of reproductive isolation by conducting reciprocal crosses between variably diverged populations of stalk‐eyed flies (Teleopsis dalmanni). First, we measure seven types of reproductive incompatibility between copulation and fertilization. We then compare fertilization success to hatching success to quantify hybrid inviability. Finally, we determine if sperm competition acts to reinforce or counteract any incompatibilities. We find evidence for multiple incompatibilities in most crosses, including failure to store sperm after mating, failure of sperm to reach the site of fertilization, failure of sperm to fertilize eggs, and failure of embryos to develop. Local sperm have precedence over foreign sperm, but this effect is due mainly to differences in sperm transfer and reduced hatching success. Crosses between recently diverged populations are asymmetrical with regard to the degree and type of incompatibility. Because sexual conflict in these flies is low, postcopulatory sexual selection, rather than antagonistic coevolution, likely causes incompatibilities due to mismatches between male and female reproductive traits.     

Population genomic,olfactory, dietary,and gut microbiota analyses demonstrate the unique evolutionary trajectory of feral pigs

Domestication is an intriguing evolutionary process. Many domestic populations are subjected to strong human-mediated selection, and when some individuals return to the wild, they are again subjected to selective forces associated with new environments. Generally, these feral populations evolve into something different from their wild predecessors and their members typically possess a combination of both wild and human selected traits. Feralisation can manifest in different forms on a spectrum from a wild to a domestic phenotype. This depends on how the rewilded domesticated populations can readapt to natural environments based on how much potential and flexibility the ancestral genome retains after its domestication signature. Whether feralisation leads to the evolution of new traits that do not exist in the wild or to convergence with wild forms, however, remains unclear. To address this question, we performed population genomic, olfactory, dietary, and gut microbiota analyses on different populations of Sus scrofa (wild boar, hybrid, feral and several domestic pig breeds). Porcine single nucleotide polymorphisms (SNPs) analysis shows that the feral population represents a cluster distinctly separate from all others. Its members display signatures of past artificial selection, as demonstrated by values of F_ST in specific regions of the genome and bottleneck signature, such as the number and length of runs of homozygosity. Generalised F_ST values, reacquired olfactory abilities, diet, and gut microbiota variation show current responses to natural selection. Our results suggest that feral pigs are an independent evolutionary unit which can persist so long as levels of human intervention remain unchanged.     

Landscape Management of Fire and Grazing Regimes Alters the Fine-Scale Habitat Utilisation by Feral Cats

Intensification of fires and grazing by large herbivores has caused population declines in small vertebrates in many ecosystems worldwide. Impacts are rarely direct, and usually appear driven via indirect pathways, such as changes to predator-prey dynamics. Fire events and grazing may improve habitat and/or hunting success for the predators of small mammals, however, such impacts have not been documented. To test for such an interaction, we investigated fine-scale habitat selection by feral cats in relation to fire, grazing and small-mammal abundance. Our study was conducted in north-western Australia, where small mammal populations are sensitive to changes in fire and grazing management. We deployed GPS collars on 32 cats in landscapes with contrasting fire and grazing treatments. Fine-scale habitat selection was determined using discrete choice modelling of cat movements. We found that cats selected areas with open grass cover, including heavily-grazed areas. They strongly selected for areas recently burnt by intense fires, but only in habitats that typically support high abundance of small mammals. Intense fires and grazing by introduced herbivores created conditions that are favoured by cats, probably because their hunting success is improved. This mechanism could explain why, in northern Australia, impacts of feral cats on small mammals might have increased. Our results suggest the impact of feral cats could be reduced in most ecosystems by maximising grass cover, minimising the incidence of intense fires, and reducing grazing by large herbivores.     

Genetic structure of natural populations of Castanea sativa in Turkey: evidence of a hybrid zone

This study points out the evidence of a hybrid zone between two groups of genetically differentiated populations of chestnut (Castanea sativa Mill.) in Turkey. Genetic structure, gene flow and introgression levels, based on 16 allozyme loci, were investigated on 34 population samples spanning the entire C. sativa distribution area in this country. The occurrence of the hybrid zone, located in the Bithynian region, was inferred in a group of populations showing the following genetic characteristics: (i) enhanced genetic variability and intermediate allelic frequencies between those of the Western and Eastern groups of populations; (ii) sharp and concordant changes in allele frequencies; (iii) decreased gene flow with the Western and Eastern populations. Starting from the cline width estimated to be 324 km, strength of selection was evaluated from the gene flow distance, as indicated from the degree of genetic structuring outside the hybrid zone. Evolutionary processes shaping the observed genetic differentiation and introgression are discussed on the basis of palynological data, palaeoclimatic events and evidence of hybridization found in other plant and animal species in the same region.     

Estuarine habitats protect hybrid mussels from selection

The marine mussels, Mytilus edulis and Mytilus galloprovincialis, form an extensive hybrid zone in Europe where F₂ hybrids and mussels of mixed genetic ancestry are often locally abundant. Hybrid zones are maintained by the interplay of dispersal and selection on hybrid genotypes but there has been vigorous debate on the form of selection that may occur in these systems. Tension zone models argue that selection is against hybrids because of developmental misregulation and is independent of the external environment. Exogenous selection models argue that selection is habitat-dependent and the structure of the hybrid zone is due to the distribution of habitat patches that vary in selection intensity. We test this prediction by comparing the genetic structure of mussel populations in open-coast habitats, where selection on hybrids is strong, to those within two independent estuaries. We show that mussels within these estuaries are protected from selection and thus selection is strongly dependent on habitat, which supports the exogenous selection hypothesis. Hybrid mussel populations on the open-coast experience strong selection against M. edulis-like genotypes, which has been postulated to be the result of differential dislodgment by waves. This hypothesis is supported by our results since mussels within sheltered habitats are protected from selection. There was, despite previous suggestions, no evidence of selection in favor of M. edulis-like mussels within either estuary.     

Genetic differences among populations in sexual dimorphism: evidence for selection on males in a dioecious plant

Genetic variation among populations in the degree of sexual dimorphism may be a consequence of selection on one or both sexes. We analysed genetic parameters from crosses involving three populations of the dioecious plant Silene latifolia, which exhibits sexual dimorphism in flower size, to determine whether population differentiation was a result of selection on one or both sexes. We took the novel approach of comparing the ratio of population differentiation of a quantitative trait (Q(ST) ) to that of neutral genetic markers (F(ST) ) for males vs. females. We attributed 72.6% of calyx width variation in males to differences among populations vs. only 6.9% in females. The Q(ST) /F(ST) ratio was 4.2 for males vs. 0.4 for females, suggesting that selection on males is responsible for differentiation among populations in calyx width and its degree of sexual dimorphism. This selection may be indirect via genetic correlations with other morphological and physiological traits.     

Habitat selection by feral cats and dingoes in a semi‐arid woodland environment in central Australia

Habitat use by feral cats and dingoes was examined within a heterogeneous semi‐arid woodland site in central Australia over 2 years. Density estimates of feral cats based on tracks were higher in mulga habitat than in open habitat. Isodar analysis implied that this pattern of habitat use by feral cats was consistent with the consumer‐resource model of density‐dependent habitat selection, which is an ideal free solution. The reason why mulga supported higher densities of feral cats was unclear. Foraging success of feral cats may be higher in the mulga because the stalk and ambush hunting tactics typically employed by felids are well suited to dense cover. Mulga may also have offered feral cats more protection from dingo predation. Dingo activity was distributed uniformly across habitats. The dingo isodar was statistically non‐significant, suggesting that habitat selection by dingoes was independent of density.     

Reproductive consequences of population divergence through sexual conflict

Sexual-selection research increasingly focuses on reproductive conflicts between the sexes. Sexual conflict, divergent evolutionary interests of males and females, can cause rapid antagonistic coevolution of reproductive traits and is a potentially powerful speciation engine. This idea has theoretical and comparative support but remains controversial. Recent experimental evidence from Sepsis cynipsea indicates that populations with greater sexual conflict diverged more quickly; females were less likely to mate with males from other populations when flies had evolved under high levels of sexual conflict. The consequences of this divergence have not been addressed, so here we assess two female fitness surrogates after 44 generations of evolving (and diverging) under three different levels of sexual conflict. Longevity after copulation was negatively associated with the degree of sexual conflict under which flies evolved, and housing females with males also reduced female longevity. Female lifetime reproductive success (LRS) also tended to decrease with increasing conflict. However, there was evidence of either sexual-selection fitness benefits at intermediate levels of sexual selection and conflict or inbreeding depression in the smallest populations (those with the lowest levels of conflict). Nevertheless, the results indicate that there can be a fitness load associated with sexual selection and support claims that sexual conflict can lead to reproductive isolation.     

Microgeographic adaptation linked to forest fragmentation and habitat quality in the tropical fruit fly Drosophila birchii

Little is known about the evolutionary implications of habitat fragmentation, although altered selection regimes could influence the genetic constitution of fragmented populations. In particular, fragmentation might lead to selection for enhanced stress resistance and tolerance of unfavorable environmental conditions. We investigated the evolutionary consequences of habitat fragmentation in Drosophila birchii flies from small fragments and the interior of large forests of northern Queensland, Australia, in three consecutive years. Evolved differences were detected in a common garden design. Flies from fragments were larger and less desiccation resistant, particularly in the first year, when they also developed faster, and had higher preadult survival under fluctuating temperatures. Furthermore, juvenile survival and adult body size were linked to a measure of habitat quality, the abundance of D. birchii in nature. The results support the hypothesis that fragmentation and habitat quality impose divergent selection. The results also bolster the conservation strategy of maintaining genetic variation for ecologically relevant traits, because persistence in fragmented habitats seems to depend on genetic variation in multiple expressed traits.     

Intraspecific mating system evolution and its effect on complex male secondary sexual traits: Does male–male competition increase selection on size or shape?

Sexual selection is generally held responsible for the exceptional diversity in secondary sexual traits in animals. Mating system evolution is therefore expected to profoundly affect the covariation between secondary sexual traits and mating success. Whereas there is such evidence at the interspecific level, data within species remain scarce. We here investigate sexual selection acting on the exaggerated male fore femur and the male wing in the common and widespread dung flies Sepsis punctum and S. neocynipsea (Diptera: Sepsidae). Both species exhibit intraspecific differences in mating systems and variation in sexual size dimorphism (SSD) across continents that correlates with the extent of male–male competition. We predicted that populations subject to increased male–male competition will experience stronger directional selection on the sexually dimorphic male foreleg. Our results suggest that fore femur size, width and shape were indeed positively associated with mating success in populations with male‐biased SSD in both species, which was not evident in conspecific populations with female‐biased SSD. However, this was also the case for wing size and shape, a trait often assumed to be primarily under natural selection. After correcting for selection on overall body size by accounting for allometric scaling, we found little evidence for independent selection on any of these size or shape traits in legs or wings, irrespective of the mating system. Sexual dimorphism and (foreleg) trait exaggeration is therefore unlikely to be driven by direct precopulatory sexual selection, but more so by selection on overall size or possibly selection on allometric scaling.     

DISRUPTIVE SELECTION ON HABITAT PREFERENCE AND THE EVOLUTION OF REPRODUCTIVE ISOLATION: AN EXPLORATORY EXPERIMENT

A. pair of replicate experiments was carried out to examine the role of habitat specialization in the process of sympatric speciation. The rationale of the experimental design was that disruptive selection for habitat preference can facilitate the process of sympatric speciation by reducing an antagonistic interaction between the processes of recombination and selection. Replicate populations of Drosophila melanogaster were subjected to disruptive selection for habitat preference and simultaneous selection for positive assortative mating, for a period of 46 generations. The experimental protocol simulated the introduction of a frugivorous fly population into a new environment that contained a mosaic of eight equally abundant habitats. Only two habitats were suitable to the flies, and these required opposite patterns of geotaxis, phototaxis, chemotaxis, and developmental time to be successfully located. At the beginning of each generation, flies were placed as pupae into the middle of a maze containing eight discrete habitats. To produce disruptive selection on habitat preference, only those flies that chose one or the other of two selected habitats were permitted to contribute gametes to the next generation. Flies from each of the selected habitats were cultured separately to simulate independent carrying capacities within each habitat. Because flies rarely mated until they assorted themselves into the available habitats, genes affecting habitat preference pleiotropically produced assortative mating between flies with similar habitat preference. A genetic marker was used to continuously monitor the level of potential gene flow between the flies derived from the two selected habitats. During the course of the experiment, there was a gradual increase in the philopatry of the flies, indicating the development of habitat specialization. The evolution of habitat specialization resulted in substantial reproductive isolation between the subpopulations utilizing each habitat resource.     

Eumelanin‐based colouration reflects local survival of juvenile feral pigeons in an urban pigeon house

Urbanisation introduces deep changes in habitats, eventually creating new urban ecosystems where ecological functions are driven by human activities. The higher frequency of some phenotypes in urban vs rural/wild areas has led to the assumption that directional selection in urban habitats occurs, which may thereby favour some behavioural and physiological traits in urban animal populations compared to rural ones. However, empirical evidence of directional selection on phenotypic traits in urban areas remains scarce. In this study we tested whether eumelanin‐based colouration could be linked to survival in two urban populations of the feral pigeon Columba livia. A number of studies in different cities pointed out a higher frequency of darker individuals in more urbanised areas compared to rural ones. To investigate whether directional selection through survival on this highly heritable trait could explain such patterns, we conducted mark–recapture studies on two populations of feral pigeons in highly urbanized areas. We predicted that darker coloured individuals would exhibit higher survival and/or philopatry (integrated into ‘local survival’) than paler coloured ones. No difference in local survival was found between adults of different colouration intensities. However, on one site, we found that darker juveniles had a higher local survival probability than light ones. Juvenile local survival on that site was also negatively correlated with the number of chicks born. This suggests the existence of colour‐ and/or density‐dependent selection processes acting on juvenile feral pigeons in urban environments, acting through differential mortality and/or dispersal.     

ILLEGAL TRANSLOCATION AND GENETIC STRUCTURE OF FERAL PIGS IN WESTERN AUSTRALIA

Abstract: Unlike many regions in the world where wild pigs (Sus scrofa) are threatened, in Australia they are a significant invasive species. As such, the molecular ecology of feral pigs was investigated to understand their social and population genetic structure. Samples from 269 adult animals were collected over their distribution in southwestern Australia. Using 14 highly polymorphic microsatellite markers, we identified 7 inferred feral pig populations that had moderate heterozygosity (mean = 0.580) and displayed a high level of differentiation (mean R_ST = 0.180). In revealing the genetic structure of feral pigs, we detected anomalies in the putative origin of some individuals. Samples from these animals were collected from 2 main areas: recently colonized regions that were previously uninfested, and established feral pig populations, where animals from geographically isolated areas had been introduced. In the latter, these corresponded to areas that were in close proximity to public road access and towns. Given the large distances immigrants were found from their population of origin (from 50 to >400 km), the generally low levels of dispersal of southwest feral pigs, and the grouping and sex of these pigs, we suggest that these individuals have been deliberately and illegally translocated to supplement recreational hunting stocks. Additionally, we could not detect any genetic contribution in these feral pigs from domestic pig herds, suggesting that the deliberate release of domestic pigs to restock feral populations is relatively uncommon. Our molecular data allowed some inferences regarding the success or lack thereof of current management practices, and offered considerable insights into the dynamics of the feral pig populations and identification of “new” approaches that may allow for better control of this highly destructive species.     

Genetic influences on cranial form: variation among ranch and feral American mink Mustela vison (Mammalia: Mustelidae)

Multivariate statistical techniques were used to examine craniometric variation within and between ranch and feral populations of American mink (Mustela vison). An examination of variation between ranches revealed that differences are greater between ranches than within ranches, although all comparisons were statistically significant. There is highly significant variation within a population of mink sampled from a single ranch during a short time period; female mink of different pelt colour are differentiable by their skull shape but not by skull size. This offers evidence for a genetic background to cranial variation in ranch mink. Cranial sexual dimorphism is reduced in ranch mink, when compared to feral populations, and size accounts for a lesser proportion of the variation between the sexes in ranched populations. In addition, the skulls of ranched mink are larger, have a relatively shorter palate and a relatively narrower postorbital constriction compared to their feral counterparts. We believe this reduced dimorphism to be a product of relaxed sexual selection, lack of resource competition and selective breeding for larger specimens of both sexes within ranch populations.     

A TEST FOR SEXUAL SELECTION ON HYBRIDS OF TWO SYMPATRIC STICKLEBACKS

In this study we assessed whether sexual selection against hybrids contributes to reproductive isolation between two sympatric stickleback species. The species are recently diverged and possibly in the final stages of speciation. Our aim was to find whether mating discrimination of the parental species selects against F₁ hybrids, and what conditions are necessary for such sexual selection to operate. We used conservative no-choice laboratory trials with reproductively naive, lab-reared fish to measure female mating preferences. Females exhibited ranked preferences, preferring in order: conspecific, hybrid, then heterospecific males. However, intermediate attractiveness does not necessarily imply selection against hybrids: two-way ANOVAs suggested that limnetic, benthic, and hybrid males were statistically equivalent when averaged across females. Thus, this experiment found no evidence for a hybrid mating disadvantage. Our interpretation is that if sexual selection against hybrids is present in the wild, then some factor that biases encounter rates between hybrids and parental species (e.g., habitat selection) is necessary to produce it.