Spatial Relationships between GABAergic and Glutamatergic Synapses on the Dendrites of Distinct Types of Mouse Retinal Ganglion Cells across Development

Neuronal output requires a concerted balance between excitatory and inhibitory (I/E) input. Like other circuits, inhibitory synaptogenesis in the retina precedes excitatory synaptogenesis. How then do neurons attain their mature balance of I/E ratios despite temporal offset in synaptogenesis? To directly compare the development of glutamatergic and GABAergic synapses onto the same cell, we biolistically transfected retinal ganglion cells (RGCs) with PSD95CFP, a marker of glutamatergic postsynaptic sites, in transgenic Thy1­YFPγ2 mice in which GABA_A receptors are fluorescently tagged. We mapped YFPγ2 and PSD95CFP puncta distributions on three RGC types at postnatal day P12, shortly before eye opening, and at P21 when robust light responses in RGCs are present. The mature I_GABA/E ratios varied among ON-Sustained (S) A-type, OFF-S A-type, and bistratified direction selective (DS) RGCs. These ratios were attained at different rates, before eye-opening for ON-S and OFF-S A-type, and after eye-opening for DS RGCs. At both ages examined, the I_GABA/E ratio was uniform across the arbors of the three RGC types. Furthermore, measurements of the distances between neighboring PSD95CFP and YFPγ2 puncta on RGC dendrites indicate that their local relationship is established early in development, and cannot be predicted by random organization. These close spatial associations between glutamatergic and GABAergic postsynaptic sites appear to represent local synaptic arrangements revealed by correlative light and EM reconstructions of a single RGC''s dendrites. Thus, although RGC types have different I_GABA/E ratios and establish these ratios at separate rates, the local relationship between excitatory and inhibitory inputs appear similarly constrained across the RGC types studied.     

不同功能型植物叶氮含量与光合特性的关系研究

在山西南部的霍山七里峪林场,确定乔木、灌木和草本物种共26个,用Li-3000A叶面积测定仪测量了叶面积的大小、用Li-6400便携式光合作用测定系统测定了叶光饱和速率（A_area）,计算了比叶重（LMA）、单位重量的光饱和光合速率（A_mass）、单位面积叶氮含量(Narea)、单位重量叶氮含量(N_mass)及光合氮利用效率(PNUE),研究了它们之间的不同和相互作用关系。结果表明：不同功能型植物的N_mass、A_area、A_mass、N_area和PNUE差异显著(p<0.05),植物叶片氮含量与植物光合生理特性具有显著相关关系,N_mass与A_area、A_mass和PNUE呈线性显著的正相关(p<0.05);N_area与A_area、A_mass、PNUE之间呈极显著的负相关(p<0.01)。     

Biotic and Abiotic Soil Properties Influence Survival of Listeria monocytogenes in Soil

Listeria monocytogenes is a food-borne pathogen responsible for the potentially fatal disease listeriosis and terrestrial ecosystems have been hypothesized to be its natural reservoir. Therefore, identifying the key edaphic factors that influence its survival in soil is critical. We measured the survival of L. monocytogenes in a set of 100 soil samples belonging to the French Soil Quality Monitoring Network. This soil collection is meant to be representative of the pedology and land use of the whole French territory. The population of L. monocytogenes in inoculated microcosms was enumerated by plate count after 7, 14 and 84 days of incubation. Analysis of survival profiles showed that L. monocytogenes was able to survive up to 84 days in 71% of the soils tested, in the other soils (29%) only a short-term survival (up to 7 to 14 days) was observed. Using variance partitioning techniques, we showed that about 65% of the short-term survival ratio of L. monocytogenes in soils was explained by the soil chemical properties, amongst which the basic cation saturation ratio seems to be the main driver. On the other hand, while explaining a lower amount of survival ratio variance (11%), soil texture and especially clay content was the main driver of long-term survival of L. monocytogenes in soils. In order to assess the effect of the endogenous soils microbiota on L. monocytogenes survival, sterilized versus non-sterilized soils microcosms were compared in a subset of 9 soils. We found that the endogenous soil microbiota could limit L. monocytogenes survival especially when soil pH was greater than 7, whereas in acidic soils, survival ratios in sterilized and unsterilized microcosms were not statistically different. These results point out the critical role played by both the endogenous microbiota and the soil physic-chemical properties in determining the survival of L. monocytogenes in soils.     

Biotic and Abiotic Constraints on the Decomposition of Fagus sylvatica Leaf Litter Along an Altitudinal Gradient in Contrasting Land-Use Types

Climate change can affect the process of carbon cycling and leaf litter decomposition in multiple ways, both directly and indirectly, though the strength and direction of this relationship is often context dependent. In this experiment, we followed decomposition of a standard litter type—senescent leaves of Fagus sylvatica collected from a single location—along a 1000 m altitudinal gradient of four sites over 2.5 years. To control the edaphic conditions, we transplanted intact turf mesocosms from three different land-use types [densely wooded, sparsely wooded, and unwooded (UW) pastures] from the highest altitude site into UW pastures along the altitudinal gradient from the moist, cool high-elevation site to the dry, warm low-elevation site, using shade cloth to mimic the light conditions in the original habitats. Decomposition in the drier UW pasture mesocosms increased with altitude, likely because of higher moisture at the highest sites. Decomposition in the more mesic mesocosms from sparsely and densely wooded sites was insensitive to altitude, suggesting an overriding moisture, rather than temperature, constraint on decomposition across these sites. The functional composition of decomposer microbial communities (fungal/bacterial ratio) was similarly insensitive to altitude. Our findings bring substantial evidence for the controlling role of soil moisture on litter decomposition, as well as for the indirect effects of climate through changes in the decomposer community.     

Grouping and Crowding Affect Target Appearance over Different Spatial Scales

Crowding is the impairment of peripheral target perception by nearby flankers. A number of recent studies have shown that crowding shares many features with grouping. Here, we investigate whether effects of crowding and grouping on target perception are related by asking whether they operate over the same spatial scale. A target letter T had two sets of flanking Ts of varying orientations. The first set was presented close to the target, yielding strong crowding. The second set was either close enough to cause crowding on their own or too far to cause crowding on their own. The Ts of the second set had the same orientation that either matched the target’s orientation (Grouped condition) or not (Ungrouped condition). In Experiment 1, the Grouped flankers reduced crowding independently of their distance from the target, suggesting that grouping operated over larger distances than crowding. In Experiments 2 and 3 we found that grouping did not affect sensitivity but produced a strong bias to report that the grouped orientation was present at the target location whether or not it was. Finally, we investigated whether this bias was a response or perceptual bias, rejecting the former in favor of a perceptual grouping explanation. We suggest that the effect of grouping is to assimilate the target to the identity of surrounding flankers when they are all the same, and that this shape assimilation effect differs in its spatial scale from the integration effect of crowding.     

不同树龄香榧土壤有机碳特征及其与土壤养分的关系

该研究以浙江省诸暨市的香榧国家森林公园5个树龄段(0~50、50~100、100~300、300~500和500a以上)的香榧(Torreyagrandis)为研究对象,通过野外采集土壤样品,分析其0~20、20~40、40~60cm土层土壤总有机碳(TOC)、易氧化碳(ROC)、轻组有机质(LFOM)及土壤养分含量,探讨不同树龄香榧土壤有机碳变化规律,为香榧林的土壤质量评价与持续利用,以及香榧古树的保护提供理论依据。结果表明:(1)不同树龄香榧土壤的总有机碳、易氧化碳和轻组有机质含量均随香榧树龄的增加呈先增大后减小的趋势,且300~500a生的数值最大,但易氧化碳与轻组有机质含量在各树龄间的差异不明显。(2)不同树龄香榧土壤中易氧化碳占总有机碳的比例总体表现为:50~100a0~50a100~300a300~500a500a以上(0~20cm土层除外)。(3)各树龄段香榧土壤易氧化碳和轻组有机质含量与土壤总有机碳之间的相关性均达到极显著水平;不同树龄段香榧土壤总有机碳、各活性有机碳组分与全氮(TN)、水解性氮(AN)、有效磷(AP)之间的相关性较好(0~50a生除外),与速效钾(AK)、交换性钙(Ca)和交换性镁(Mg)之间的相关性较差(500a以上除外);500a以上香榧土壤总有机碳、各活性有机碳组分与土壤养分的相关性均达到极显著水平。     

Spatial Heterogeneity and Soil Nitrogen Dynamics in a Burned Black Spruce Forest Stand: Distinct Controls at Different Scales

We evaluated spatial patterns of soil N and C mineralization, microbial community composition (phospholipid fatty acids), and local site characteristics (plant/forest floor cover, soil pH, soil %C and %N) in a 0.25-ha burned black spruce forest stand in interior Alaska. Results indicated that factors governing soil N and C mineralization varied at two different scales. In situ net N mineralization was autocorrelated with microbial community composition at relatively broad scales (∼ ∼8 m) and with local site characteristics (`site' axis 1 of non-metric scaling ordination) at relatively fine scales (2–4 m). At the scale of the individual core, soil moisture was the best predictor of in situ net N mineralization and laboratory C mineralization, explaining between 47 and 67% of the variation (p < 0.001). Ordination of microbial lipid data showed that bacteria were more common in severely burned microsites, whereas fungi were more common in low fire severity microsites. We conclude that C and N mineralization rates in this burned black spruce stand were related to different variables depending on the scale of analysis, suggesting the importance of considering multiple scales of variability among key drivers of C and N transformations.     

Different Response Patterns of Soil Respiration to a Nitrogen Addition Gradient in Four Types of Land-Use on an Alluvial Island in China

It has been well documented that nitrogen (N) additions significantly affect soil respiration (R _s) and its components [that is, autotrophic (R _a) and heterotrophic respiration (R _h)] in terrestrial ecosystems. These N-induced effects largely result from changes in plant growth, soil properties (for example, pH), and/ or microbial community. However, how R _s and its components respond to N addition gradients from low to high fertilizer application rates and what the differences are in diverse land-use types remain unclear. In our study, a field experiment was conducted to examine response patterns of R _s to a N addition gradient at four levels (0, 15, 30, and 45 g N m^?2 y^?1) in four types of land-use (paddy rice–wheat and maize–wheat croplands, an abandoned field grassland, and a Metasequoia plantation) from December 2012 to September 2014 in eastern China. Our results showed that N addition significantly stimulated R _s in all four land-use types and R _h in croplands (paddy rice–wheat and maize–wheat). R _s increased linearly with N addition rates in croplands and the plantation, whereas in grassland, it exhibited a parabolic response to N addition rates with the highest values at the moderate N level in spite of the homogeneous matrix for all four land-use types. This suggested higher response thresholds of R _s to the N addition gradient in croplands and the plantation. During the wheat-growing season in the two croplands, R _h also displayed linear increases with rising N addition rates. Interestingly, N addition significantly decreased the apparent temperature sensitivity of R _s and increased basal R _s. The different response patterns of R _s to the N addition gradient in diverse land-use types with a similar soil matrix indicate that vegetation type is very important in regulating terrestrial C cycle feedback to climate change under N deposition.     

西双版纳地区不同胶农复合林对土壤理化性质的影响

对云南西双版纳地区橡胶-大叶千斤拔、橡胶-可可、橡胶-茶叶、橡胶-龙血树4种较典型的胶农复合林和单层橡胶林的土壤理化性状进行研究,并利用主成分分析法评价,揭示不同胶农复合林的土壤特性差异,为单层橡胶林的胶农复合林改造提供理论依据。结果表明,单层橡胶林的土壤有机质含量、土壤容重、土壤含水量、土壤总孔隙度及土壤导水率与橡胶-大叶千斤拔、橡胶-可可、橡胶-茶叶、橡胶-龙血树等4种胶农复合林土壤的相应指标均具有显著性差异(P<0.05);单层橡胶林改造为胶农复合林后,土壤有机质含量和全氮含量增加幅度分别为21.3%～50.1%和26.2%～39.9%,同时土壤容重降低,土壤孔隙度增加,土壤含水量与导水率显著增加。在西双版纳地区,将单层橡胶林改造为胶农复合林可提高土壤肥力、保持水土,是较理想的生态农业模式。     

Association of Host and Microbial Species Diversity across Spatial Scales in Desert Rodent Communities

Relationships between host and microbial diversity have important ecological and applied implications. Theory predicts that these relationships will depend on the spatio-temporal scale of the analysis and the niche breadth of the organisms in question, but representative data on host-microbial community assemblage in nature is lacking. We employed a natural gradient of rodent species richness and quantified bacterial communities in rodent blood at several hierarchical spatial scales to test the hypothesis that associations between host and microbial species diversity will be positive in communities dominated by organisms with broad niches sampled at large scales. Following pyrosequencing of rodent blood samples, bacterial communities were found to be comprised primarily of broad niche lineages. These communities exhibited positive correlations between host diversity, microbial diversity and the likelihood for rare pathogens at the regional scale but not at finer scales. These findings demonstrate how microbial diversity is affected by host diversity at different spatial scales and suggest that the relationships between host diversity and overall disease risk are not always negative, as the dilution hypothesis predicts.     

Filtering across Spatial Scales: Phylogeny,Biogeography and Community Structure in Bumble Bees

Despite the expansion of phylogenetic community analysis to understand community assembly, few studies have used these methods on mobile organisms and it has been suggested the local scales that are typically considered may be too small to represent the community as perceived by organisms with high mobility. Mobility is believed to allow species to mediate competitive interactions quickly and thus highly mobile species may appear randomly assembled in local communities. At larger scales, however, biogeographical processes could cause communities to be either phylogenetically clustered or even. Using phylogenetic community analysis we examined patterns of relatedness and trait similarity in communities of bumble bees (Bombus) across spatial scales comparing: local communities to regional pools, regional communities to continental pools and the continental community to a global species pool. Species composition and data on tongue lengths, a key foraging trait, were used to test patterns of relatedness and trait similarity across scales. Although expected to exhibit limiting similarity, local communities were clustered both phenotypically and phylogenetically. Larger spatial scales were also found to have more phylogenetic clustering but less trait clustering. While patterns of relatedness in mobile species have previously been suggested to exhibit less structure in local communities and to be less clustered than immobile species, we suggest that mobility may actually allow communities to have more similar species that can simply limit direct competition through mobility.     

The Spatial Properties of L- and M-Cone Inputs to Electroretinograms That Reflect Different Types of Post-Receptoral Processing

We studied the spatial arrangement of L- and M-cone driven electroretinograms (ERGs) reflecting the activity of magno- and parvocellular pathways. L- and M-cone isolating sine wave stimuli were created with a four primary LED stimulator using triple silent substitution paradigms. Temporal frequencies were 8 and 12 Hz, to reflect cone opponent activity, and 30, 36 and 48 Hz to reflect luminance activity. The responses were measured for full-field stimuli and for different circular and annular stimuli. The ERG data confirm the presence of two different mechanisms at intermediate and high temporal frequencies. The responses measured at high temporal frequencies strongly depended upon spatial stimulus configuration. In the full-field conditions, the L-cone driven responses were substantially larger than the full-field M-cone driven responses and also than the L-cone driven responses with smaller stimuli. The M-cone driven responses at full-field and with 70° diameter stimuli displayed similar amplitudes. The L- and M-cone driven responses measured at 8 and 12 Hz were of similar amplitude and approximately in counter-phase. The amplitudes were constant for most stimulus configurations. The results indicate that, when the ERG reflects luminance activity, it is positively correlated with stimulus size. Beyond 35° retinal eccentricity, the retina mainly contains L-cones. Small stimuli are sufficient to obtain maximal ERGs at low temporal frequencies where the ERGs are also sensitive to cone-opponent processing.     

Comparison of Euryarchaea Strains in the Guts and Food-Soil of the Soil-Feeding Termite Cubitermes fungifaber across Different Soil Types

Termites are an important component of tropical soil communities and have a significant effect on the structure and nutrient content of soil. Digestion in termites is related to gut structure, gut physicochemical conditions, and gut symbiotic microbiota. Here we describe the use of 16S rRNA gene sequencing and terminal-restriction fragment length polymorphism (T-RFLP) analysis to examine methanogenic archaea (MA) in the guts and food-soil of the soil-feeder Cubitermes fungifaber Sjostedt across a range of soil types. If these MA are strictly vertically inherited, then the MA in guts should be the same in all individuals even if the soils differ across sites. In contrast, gut MA should reflect what is present in soil if populations are merely a reflection of what is ingested as the insects forage. We show clear differences between the euryarchaeal communities in termite guts and in food-soils from five different sites. Analysis of 16S rRNA gene clones indicated little overlap between the gut and soil communities. Gut clones were related to a termite-derived Methanomicrobiales cluster, to Methanobrevibacter and, surprisingly, to the haloalkaliphile Natronococcus. Soil clones clustered with Methanosarcina, Methanomicrococcus, or rice cluster I. T-RFLP analysis indicated that the archaeal communities in the soil samples differed from site to site, whereas those in termite guts were similar between sites. There was some overlap between the gut and soil communities, but these may represent transient populations in either guts or soil. Our data do not support the hypothesis that termite gut MA are derived from their food-soil but also do not support a purely vertical transmission of gut microflora.     

Relationships between Human Population Density and Burned Area at Continental and Global Scales

We explore the large spatial variation in the relationship between population density and burned area, using continental-scale Geographically Weighted Regression (GWR) based on 13 years of satellite-derived burned area maps from the global fire emissions database (GFED) and the human population density from the gridded population of the world (GPW 2005). Significant relationships are observed over 51.5% of the global land area, and the area affected varies from continent to continent: population density has a significant impact on fire over most of Asia and Africa but is important in explaining fire over < 22% of Europe and Australia. Increasing population density is associated with both increased and decreased in fire. The nature of the relationship depends on land-use: increasing population density is associated with increased burned are in rangelands but with decreased burned area in croplands. Overall, the relationship between population density and burned area is non-monotonic: burned area initially increases with population density and then decreases when population density exceeds a threshold. These thresholds vary regionally. Our study contributes to improved understanding of how human activities relate to burned area, and should contribute to a better estimate of atmospheric emissions from biomass burning.     

Landscapes for Energy and Wildlife: Conservation Prioritization for Golden Eagles across Large Spatial Scales

Proactive conservation planning for species requires the identification of important spatial attributes across ecologically relevant scales in a model-based framework. However, it is often difficult to develop predictive models, as the explanatory data required for model development across regional management scales is rarely available. Golden eagles are a large-ranging predator of conservation concern in the United States that may be negatively affected by wind energy development. Thus, identifying landscapes least likely to pose conflict between eagles and wind development via shared space prior to development will be critical for conserving populations in the face of imposing development. We used publically available data on golden eagle nests to generate predictive models of golden eagle nesting sites in Wyoming, USA, using a suite of environmental and anthropogenic variables. By overlaying predictive models of golden eagle nesting habitat with wind energy resource maps, we highlight areas of potential conflict among eagle nesting habitat and wind development. However, our results suggest that wind potential and the relative probability of golden eagle nesting are not necessarily spatially correlated. Indeed, the majority of our sample frame includes areas with disparate predictions between suitable nesting habitat and potential for developing wind energy resources. Map predictions cannot replace on-the-ground monitoring for potential risk of wind turbines on wildlife populations, though they provide industry and managers a useful framework to first assess potential development.     

Measuring Spider Richness: Effects of Different Sampling Methods and Spatial and Temporal Scales

Assessing the richness of invertebrate taxa to aid conservation and management requires a better understanding of the potential sources of error. Patterns of richness for heathland spiders at the species and family levels were compared across three sampling methods, four spatial scales, and monthly intervals (for 16 months). A total of 33 families and 130 species was collected: pitfall traps collected 94% of species, sweep net, 25%, and visual search, 41%. The sampling methods produced variable results. Pitfall trap and sweep net techniques identified significant, yet contrasting spatial differences in the number of families and species at one spatial scale. Pitfall trap data reflected strong temporal variation that influenced spatial patterns in richness (across one spatial scale for families and two for species). The use of broader temporal scales introduced a potential failure to detect significant differences in the richness of ground active spiders, and this risk varied spatially. The sweep net is not recommended for this habitat, although a method that targets the foliage is required for a more complete faunal assessment. Visual searches detected no significant patterns in richness, yet given its potential and increasing use for rapid biodiversity surveys, ways to improve sampling efficiency are suggested.     

Relationship between Riparian Vegetation and Stream Benthic Communities at Three Spatial Scales

We examined the influence of riparian vegetation on macroinvertebrate community structure in streams of the Upper Thames River watershed in southwestern Ontario. Thirty-three μ-basins (129–1458 ha) were used to identify land cover variables that influenced stream macroinvertebrates. Micro-basins represented the entire drainage area of study streams and were similar in stream order (first, second) and land cover (agricultural or forest; no urban). We described the structure and composition of riparian vegetation and benthic macroinvertebrate communities at the outflow reach. The nature of the land cover was quantified for the stream network buffer (30 m) and the whole μ-basin. The objective of this study was to measure the magnitude and nature of the relationship between the riparian vegetation and benthic macroinvertebrate community at the outflow reach, stream network buffer, and whole μ-basin scales. Taxon richness (including total number of Ephemeroptera, Plecoptera, and Trichoptera taxa) and Simpson’s diversity of the macroinvertebrate community all increased with increased tree cover in the riparian zone at the outflow reach scale. Simpson’s equitability was lower with greater agricultural land cover in the stream network buffer. No relationship between the macroinvertebrate community and land cover was found at the whole μ-basin scale. Analysis of the influence of land cover on stream communities within a spatial hierarchy is important for understanding the interactions of stream ecosystems with their adjacent landscapes.