At-sea behaviour and habitat use by tropicbirds in the eastern Pacific

During the boreal spring and autumn 1980–95, we surveyed Red-tailed Phaethon rubricauda , White-tailed P . lepturus and Red-billed Tropicbirds P. aethereus at sea in the eastern Pacific. Two subpopulations were indicated for both rubricauda and lepturus , based on distribution hiatuses near the South Equatorial Current (see companion paper). Thus, five populations were examined, two each of rubricauda and lepturus , and one of aethereus . During the boreal spring, when equatorial current systems are less well developed, geographical variables (distance from nearest colony and nearest land) were the most important variables affecting tropicbird occurrence. However, sea-surface salinity and thermal structure of the water column were the primary variables delineating tropicbird occurrence during the boreal autumn. Each tropicbird species utilized different species/sizes of aquatic predators (that make their prey available at the surface) that in turn utilize different oceanographic environments. We suspect that the distribution of aquatic predators is primarily responsible for colony locations and distribution of tropicbird species in the eastern Pacific.     

Larval spatial distributions and other early life-history characteristics predict genetic differentiation in eastern Pacific blennioid fishes

In marine organisms, a pelagic larval stage increases the opportunities for long-distance dispersal and is often associated with little genetic differentiation over large geographical distances. Here we test the hypothesis that early life-history characteristics, including larval spatial distributions, affect the rates of dispersal and, therefore, the levels of genetic partitioning among three Gulf of California reef fishes: Axoclinus nigricaudus, Malacoctenus hubbsi and Ophioblennius steindachneri. These three blennioid fishes have markedly different early life histories: A. nigricaudus has a short larval duration (18 days) and develops inshore, M. hubbsi has an intermediate larval duration (24 days) and most individuals develop inshore and O. steindachneri has a long larval life (50 days) and disperses offshore. Estimates of genetic partitioning from mtDNA control region sequences differed greatly between these species and were in the same rank order as predicted by their early life-history characteristics (A. nigricaudus N(ST)=0.536, M. hubbsi N(ST)=0.261 and O. steindachneri N(ST)=0.000). These results indicate that larval strategies may be good predictors of population genetic structure in some marine fishes.     

Indo-Pacific echinoids in the tropical eastern Pacific

The existing literature reports that only one species of Indo-Pacific echinoid (Echinometra oblonga), occurs in the eastern Pacific. In this study we confirm the presence of this species at Islas Revillagigedo and also report the presence of two species ofEchinothrix (a genus hitherto unknown outside the Indo-Pacific) at Isla del Coco and at Clipperton Island. We also present evidence from isozymes and from mitochondrial DNA sequences indicating that at least one individual ofDiadema at Clipperton may belong to a maternal lineage characteristic of the west Pacific speciesD. savignyi. These data are consistent with the hypothesis that the observed populations of Indo-Pacific echinoid species are recent arrivals to the eastern Pacific, as opposed to the view that they are relicts of Tethyan pan-tropical distributions.Echinothrix diadema, in particular, may have arrived at Isla del Coco during the 1982-1983 El Nifio. In addition to Indo-Pacific species, Clipperton, Isla del Coco and the Revillagigedos contain a complement of eastern Pacific echinoids. The echinoid faunas of these islands should, therefore, be regarded as mixtures of two biogeographic provinces. Though none of the Indo-Pacific species are known to have reached the coast of the American mainland, their presence at the offshore islands of the eastern Pacific suggests that, for some echinoids, the East Pacific Barrier is not as formidable an obstacle to migration as was previously thought.     

On plotting species abundance distributions

1. There has been a revival of interest in species abundance distribution (SAD) models, stimulated by the claim that the log-normal distribution gave an underestimate of the observed numbers of rare species in species-rich assemblages. This led to the development of the neutral Zero Sum Multinomial distribution (ZSM) to better fit the observed data. 2. Yet plots of SADs, purportedly of the same data, showed differences in frequencies of species and of statistical fits to the ZSM and log-normal models due to the use of different binning methods. 3. We plot six different binning methods for the Barro Colorado Island (BCI) tropical tree data. The appearances of the curves are very different for the different binning methods. Consequently, the fits to different models may vary depending on the binning system used. 4. There is no agreed binning method for SAD plots. Our analysis suggests that a simple doubling of the number of individuals per species in each bin is perhaps the most practical one for illustrative purposes. Alternatively rank-abundance plots should be used. 5. For fitting and testing models exact methods have been developed and application of these does not require binning of data. Errors are introduced unnecessarily if data are binned before testing goodness-of-fit to models.     

Models for the logarithmic species abundance distributions

Three models, developed by Karlin, McGregor and Ewens to describe evolving populations of selectively neutral genotypes, are shown to lead to various versions of Fisher's logarithmic series distribution for species abundance. Statistical inference procedures and measures of diversity which have been developed in one of the two contexts are therefore also applicable in the other context, and the paper reviews and extends these links. Some work of Fisher, Good and Rao is shown to be based on a faulty version of the logarithmic distribution, which, nevertheless, is a good approximation to a consistent version.     

On the statistical mechanics of species abundance distributions

A central issue in ecology is that of the factors determining the relative abundance of species within a natural community. The proper application of the principles of statistical physics to species abundance distributions (SADs) shows that simple ecological properties could account for the near universal features observed. These properties are (i) a limit on the number of individuals in an ecological guild and (ii) per capita birth and death rates. They underpin the neutral theory of Hubbell (2001), the master equation approach of  [Volkov et?al., 2003] and [Volkov et?al., 2005] and the idiosyncratic (extreme niche) theory of Pueyo et al. (2007); they result in an underlying log series SAD, regardless of neutral or niche dynamics. The success of statistical mechanics in this application implies that communities are in dynamic equilibrium and hence that niches must be flexible and that temporal fluctuations on all sorts of scales are likely to be important in community structure.     

Spatial scaling of species abundance distributions

Species abundance distributions are an essential tool in describing the biodiversity of ecological communities. We now know that their shape changes as a function of the size of area sampled. Here we analyze the scaling properties of species abundance distributions by using the moments of the logarithmically transformed number of individuals. We find that the moments as a function of area size are well fitted by power laws and we use this pattern to estimate the species abundance distribution for areas larger than those sampled. To reconstruct the species abundance distribution from its moments, we use discrete Tchebichef polynomials. We exemplify the method with data on tree and shrub species from a 50 ha plot of tropical rain forest on Barro Colorado Island, Panama. We test the method within the 50 ha plot, and then we extrapolate the species abundance distribution for areas up to 5 km². Our results project that for areas above 50 ha the species abundance distributions have a bimodal shape with a local maximum occurring for the singleton classes and that this maximum increases with sampled area size.     

A bowhead whale in the eastern North Pacific

Bowhead whales occur in the Arctic year‐round. Their movements are largely correlated with seasonal expansions and reductions of sea ice, but a few recent extralimital sightings have occurred in the eastern and western North Atlantic and one was also documented in the western North Pacific over 50 years ago. Here we present details of a juvenile bowhead whale that was photographed and filmed from above and below the water while it was skim‐feeding in Caamaño Sound, BC, Canada on May 31, 2016. This sighting occurred over 2000 km southeast from the nearest known range for this species in the Bering Sea at a time that most bowhead whales in that region would have been migrating northeast. This sighting represents the first and only documentation of a bowhead whale in the eastern North Pacific to date.     

How selection structures species abundance distributions

How do species divide resources to produce the characteristic species abundance distributions seen in nature? One way to resolve this problem is to examine how the biomass (or capacity) of the spatial guilds that combine to produce an abundance distribution is allocated among species. Here we argue that selection on body size varies across guilds occupying spatially distinct habitats. Using an exceptionally well-characterized estuarine fish community, we show that biomass is concentrated in large bodied species in guilds where habitat structure provides protection from predators, but not in those guilds associated with open habitats and where safety in numbers is a mechanism for reducing predation risk. We further demonstrate that while there is temporal turnover in the abundances and identities of species that comprise these guilds, guild rank order is conserved across our 30-year time series. These results demonstrate that ecological communities are not randomly assembled but can be decomposed into guilds where capacity is predictably allocated among species.     

Taking species abundance distributions beyond individuals

The species abundance distribution (SAD) is one of the few universal patterns in ecology. Research on this fundamental distribution has primarily focused on the study of numerical counts, irrespective of the traits of individuals. Here we show that considering a set of Generalized Species Abundance Distributions (GSADs) encompassing several abundance measures, such as numerical abundance, biomass and resource use, can provide novel insights into the structure of ecological communities and the forces that organize them. We use a taxonomically diverse combination of macroecological data sets to investigate the similarities and differences between GSADs. We then use probability theory to explore, under parsimonious assumptions, theoretical linkages among them. Our study suggests that examining different GSADs simultaneously in natural systems may help with assessing determinants of community structure. Broadening SADs to encompass multiple abundance measures opens novel perspectives in biodiversity research and warrants future empirical and theoretical developments.     

Distribution and abundance of the dugong in New Caledonia, southwest Pacific

New Caledonia is at the eastern limit of the dugong's range. In June 2003 standardized dugong aerial survey methodology was used to estimate the abundance and distribution of dugongs in the coastal waters of New Caledonia, resulting in a population estimate of 1,814 ± SE 332. This represents the largest concentration of dugongs in Melanesia and one of the largest populations in the world, outside Australia and the Arabian region. Calves comprised 7.2% of the population. The observed density of dugongs was highest in the center and southern part of the west coast of the island but not significantly different from the density on the north west and north east. In the central west region, sightings were associated with a pass in the barrier reef and up to a third of the on‐survey sightings were outside of the barrier reef. The dugong distribution we observed during June 2003 differs from the reported locations of historical hunts in several respects.     

Phylogeography and historical demography of Sicydium salvini in the eastern Pacific

Amphidromy, characterized by freshwater adult and marine larval stages, has been shown to be an important influence on the genetic structure of aquatic populations. Sicydium salvini is a widespread goby species (Teleostei: Gobiidae: Sicydiinae) in the eastern Pacific with a continuous distribution from Mexico to Panama. Here, we use mitochondrial data to infer population genetic and historical demography of this species. Sequences were collected for the mitochondrial gene cytochrome b for 162 specimens sampled across the range of S. salvini with a concentration on rivers in Costa Rica. No genetic structure was detected between regions or rivers in the AMOVA analysis; the phylogeny for this species showed no geographic affinities and very little resolution. Historical demographic analyses indicated a population expansion during the late Pleistocene. These results are consistent with a panmictic population with expansion influenced strongly by Pleistocene glacial cycles and geologic uplift.     

Seasonal occurrence of southeast Pacific blue whale songs in southern Chile and the eastern tropical Pacific

Passive acoustic data were collected January 2012 to April 2013 at four sites in the Chiloense Ecoregion (CER) in southern Chile (≈43°S–44°S, 71°W–73°W) and 1996–2002 from one site in the eastern tropical Pacific (ETP) (8°S, 95°W). Automatic detectors were used to detect the two songs (SEP1 and SEP2) described for southeast Pacific (SEP) blue whales. There was a strong seasonal pattern of occurrence of SEP songs in the CER from December to August, peaking March to May. In the ETP, the occurrence of songs was an order of magnitude lower but songs were present year‐round, with a peak around June. These findings support austral summer/autumn seasonal residency in the CER and a seasonal movement of blue whales towards the ETP during June/July, returning in December. Interannual differences in the ETP were possibly linked to the 1997–1998 El Niño event. At both study sites, SEP2 was significantly more common than SEP1; both songs largely followed the same temporal trends. These findings contribute to our understanding of the seasonal movements of endangered SEP blue whales and can inform conservation strategies, particularly in the CER coastal feeding ground. We recommend future year‐round passive acoustic studies in the CER and the ETP (e.g., near the Galapagos Islands), ideally coupled with oceanographic data.     

Distribution of abundance across the range in eastern North American trees

Aim  We analysed spatial datasets of abundance across the entirety, or near entirety, of the geographical ranges of 134 tree species to test macroecological hypotheses concerning the distribution of abundance across geographical ranges.
Location  Our abundance estimates came via the USDA Forest Service Forest Inventory and Analysis Eastwide Database, which contains data for 134 eastern North American tree species.
Methods  We extracted measures of range size and the spatial location of abundance relative to position in the range for each species to test four hypotheses: (a) species occur in low abundance throughout most of their geographical range; (b) there is a positive interspecific relationship between abundance and range size; (c) species are more abundant in the centre of their range; and (d) there is a bimodal distribution of spatial autocorrelation in abundance across a species range.
Results  Our results demonstrate that (a) most species (85%) are abundant somewhere in their geographical range; (b) species achieving relatively high abundance tend to have larger range sizes; (c) the widely held assumption that species exhibit an 'abundant-centre distribution' is not well supported for the majority of species; we suggest 'abundant-core' as a more suitable term; and (d) there is no evidence of a bimodal distribution of spatial autocorrelation in abundance.  

Main Conclusions 

For many tree species, high abundance can be achieved at any position in the range, though suitable sites are found with less frequency towards range edges. Competitive relationships may be involved in the distribution of abundance across tree ranges and species with larger ranges (and possibly broader niches) may be affected more by biotic interactions than smaller ranging species.     

Analytical evidence for scale-invariance in the shape of species abundance distributions

The distribution of species abundances within an ecological community provides a window into ecological processes and has important applications in conservation biology as an indicator of disturbance. Previous work indicates that species abundance distributions might be independent of the scales at which they are measured which has implications for data interpretation. Here we formulate an analytically tractable model for the species abundance distribution at different scales and discuss the biological relevance of its assumptions. Our model shows that as scale increases, the shape of the species abundance distribution converges to a particular shape given uniquely by the Jaccard index of spatial species turnover and by a parameter for the spatial correlation of abundances. Our model indicates that the shape of the species abundance distribution is taxon specific but does not depend on sample area, provided this area is large. We conclude that the species abundance distribution may indeed serve as an indicator of disturbances affecting species spatial turnover and that the assumption of conservation of energy in ecosystems, which is part of the Maximum Entropy approach, should be re-evaluated.