A dual role for UVRAG in maintaining chromosomal stability independent of autophagy

Autophagy defects have recently been associated with chromosomal instability, a hallmark of human cancer. However, the functional specificity and mechanism of action of autophagy-related factors in genome stability remain elusive. Here we report that UVRAG, an autophagic tumor suppressor, plays a dual role in chromosomal stability, surprisingly independent of autophagy. We establish that UVRAG promotes DNA double-strand-break repair by directly binding and activating DNA-PK in nonhomologous end joining. Disruption of UVRAG increases genetic instability and sensitivity of cells to irradiation. Furthermore, UVRAG was also found to be localized at centrosomes and physically associated with CEP63, an integral component of centrosomes. Disruption of the association of UVRAG with centrosomes causes centrosome instability and aneuploidy. UVRAG thus represents an autophagy-related molecular factor that also has a convergent role in patrolling both the structural integrity and proper segregation of chromosomes, which may confer autophagy-independent tumor suppressor activity.     

Base excision repair and its role in maintaining genome stability

For all living organisms, genome stability is important, but is also under constant threat because various environmental and endogenous damaging agents can modify the structural properties of DNA bases. As a defense, organisms have developed different DNA repair pathways. Base excision repair (BER) is the predominant pathway for coping with a broad range of small lesions resulting from oxidation, alkylation, and deamination, which modify individual bases without large effect on the double helix structure. As, in mammalian cells, this damage is estimated to account daily for 10(4) events per cell, the need for BER pathways is unquestionable. The damage-specific removal is carried out by a considerable group of enzymes, designated as DNA glycosylases. Each DNA glycosylase has its unique specificity and many of them are ubiquitous in microorganisms, mammals, and plants. Here, we review the importance of the BER pathway and we focus on the different roles of DNA glycosylases in various organisms.     

The role of Cdh1p in maintaining genomic stability in budding yeast

Cdh1p, a substrate specificity factor for the cell cycle-regulated ubiquitin ligase, the anaphase-promoting complex/cyclosome (APC/C), promotes exit from mitosis by directing the degradation of a number of proteins, including the mitotic cyclins. Here we present evidence that Cdh1p activity at the M/G(1) transition is important not only for mitotic exit but also for high-fidelity chromosome segregation in the subsequent cell cycle. CDH1 showed genetic interactions with MAD2 and PDS1, genes encoding components of the mitotic spindle assembly checkpoint that acts at metaphase to prevent premature chromosome segregation. Unlike cdh1delta and mad2delta single mutants, the mad2delta cdh1delta double mutant grew slowly and exhibited high rates of chromosome and plasmid loss. Simultaneous deletion of PDS1 and CDH1 caused extensive chromosome missegregation and cell death. Our data suggest that at least part of the chromosome loss can be attributed to kinetochore/spindle problems. Our data further suggest that Cdh1p and Sic1p, a Cdc28p/Clb inhibitor, have overlapping as well as nonoverlapping roles in ensuring proper chromosome segregation. The severe growth defects of both mad2delta cdh1delta and pds1delta cdh1dDelta strains were rescued by overexpressing Swe1p, a G(2)/M inhibitor of the cyclin-dependent kinase, Cdc28p/Clb. We propose that the failure to degrade cyclins at the end of mitosis leaves cdh1delta mutant strains with abnormal Cdc28p/Clb activity that interferes with proper chromosome segregation.     

Defining a new role of GW182 in maintaining miRNA stability

GW182 binds to Argonaute (AGO) proteins and has a central role in miRNA‐mediated gene silencing. Using lentiviral shRNA‐induced GW182 knockdown in HEK293 cells, this study identifies a new role of GW182 in regulating miRNA stability. Stably knocking down GW182 or its paralogue TNRC6B reduces transfected miRNA‐mimic half‐lives. Replenishment of GW182 family proteins, as well as one of its domain Δ12, significantly restores the stability of transfected miRNA‐mimic. GW182 knockdown reduces miRNA secretion via secretory exosomes. Targeted siRNA screening identifies a 3′–5′ exoribonuclease complex responsible for the miRNA degradation only when GW182 is knocked down. Immunoprecipitation further confirms that the presence of GW182 in the RISC complex is critical in protecting Argonaute‐bound miRNA.     

河岸无脊椎动物多样性维持机制研究进展

河岸是河流与陆地之间重要的生态界面,生物多样性丰富,但受到人为活动的严重威胁。无脊椎动物在河岸生物多样性中占有重要地位,发挥着非常重要的生态功能,也是水生生态系统和陆地生态系统之间物质和能量联系的重要纽带。尽管已有很多学者对河岸无脊椎动物群落进行了研究,但缺乏对河岸无脊椎动物多样性维持机制的总结。本文结合洪水和干旱、营养物质、微生境多样性、河岸植被、微气候梯度、食物资源以及河流空间梯度等影响因素,初步讨论和归纳了河岸无脊椎动物多样性的维持机制。周期性洪水和干旱引发了无脊椎动物的繁殖和迁移等行为,增加了河岸无脊椎动物群落周转率,为无脊椎动物创造了理想的条件。充足的营养物质使河岸具有较高的初级生产力,支撑了较高的无脊椎动物多样性。较高的微生境多样性为无脊椎动物提供了多样的生态位空间,孕育了特殊的河岸无脊椎动物种类。复杂的河岸植物群落不但是河岸无脊椎动物的食物来源之一,也为河岸无脊椎动物提供了多样的生态位空间和重要的避难场所。微气候环境的空间分异提供了复杂多样的生境条件,为水生无脊椎动物和陆生无脊椎动物种类在河岸共存创造了条件。跨越界面的资源补给增加了河岸无脊椎动物的食物可利用率,为河岸无脊椎动物提供了特殊的食物来源。这些因素在空间上呈现出明显的纵向梯度和侧向梯度,从更大尺度上为河岸无脊椎动物的多样化提供了条件。因此,探讨河岸无脊椎动物多样性的维持机制对于河岸生物多样性保护以及河流生态系统综合管理具有重要的指导意义。     

Dominance of non-native riparian trees in western USA

Concern about spread of non-native riparian trees in the western USA has led to Congressional proposals to accelerate control efforts. Debate over these proposals is frustrated by limited knowledge of non-native species distribution and abundance. We measured abundance of 44 riparian woody plants at 475 randomly selected stream gaging stations in 17 western states. Our sample indicates that Tamarix ramosissima and Elaeagnus angustifolia are already the third and fourth most frequently occurring woody riparian plants in the region. Although many species of Tamarix have been reported in the region, T. ramosissima (here including T. chinensis and hybrids) is by far the most abundant. The frequency of occurrence of T. ramosissima has a strong positive relation with the mean annual minimum temperature, which is consistent with hypothesized frost sensitivity. In contrast the frequency of occurrence of E. angustifolia decreases with increasing minimum temperatures. Based on mean normalized cover, T. ramosissima and E. angustifolia are the second and fifth most dominant woody riparian species in the western USA. The dominance of T. ramosissima has been suspected for decades; the regional ascendance of E. angustifolia, however, has not previously been reported.     

Soil-disturbance by native animals plays a critical role in maintaining healthy Australian landscapes

Summary   Soil-disturbing animals have wide-ranging effects on both biotic and abiotic processes across a number of Australian ecosystems. They alter soil quality by mixing surface soils and trapping litter and water, leading to areas of increased decomposition of organic matter. The foraging pits of indigenous soil-disturbing animals tend to have different soil chemical characteristics, greater levels of infiltration and lower levels of soil density than adjacent areas. Enhanced capture of seeds and water turns disturbance pits into areas of enhanced plant germination. The burrows, pits and mounds of both native and exotic animals provide habitat for a range of vertebrates and invertebrates and contribute to patchiness in the landscape. Given their wide-ranging effects on surface soil and ecological processes, we argue in this review that soil disturbance by native animals has the potential to contribute to restoration of degraded landscapes, particularly in arid and semi-arid areas.     

The physician's role in maintaining hope and spirituality

This paper examines several areas that health care providers may find difficult in the care of patients near the end of their lives. It looks at society's denial of death and at ways physicians and their patients use ongoing active treatments to maintain that denial. It suggests that as active treatment fails to be effective and hope fades, physicians must find ways to care for those they cannot cure. It explores the function of hope to help physicians, their patients, and their patients' families redirect their thinking. Finally, it describes how the physician may support a patient's spirituality by becoming more comfortable with his own.     

Caenorhabditis elegans APN-1 plays a vital role in maintaining genome stability

We previously showed that Caenorhabditis elegans APN-1, the only metazoan apurinic/apyrimidinc (AP) endonuclease belonging to the endonuclease IV family, can functionally rescue the DNA repair defects of Saccharomyces cerevisiae mutants completely lacking AP endonuclease/3′-diesterase activities. While this complementation study provided the first evidence that APN-1 possesses the ability to act on DNA lesions that are processed by AP endonucleases/3′-diesterase activities, no former studies were conducted to examine its biological importance in vivo. Herein, we show that C. elegans knockdown for apn-1 by RNAi displayed phenotypes that are directly linked with a defect in maintaining the integrity of the genome. apn-1(RNAi) animals exhibited a 5-fold increase in the frequency of mutations at a gfp-lacZ reporter and showed sensitivities to DNA damaging agents such as methyl methane sulfonate and hydrogen peroxide that produce AP site lesions and strand breaks with blocked 3′-ends. The apn-1(RNAi) worms also displayed a delay in the division of the P1 blastomere, a defect that is consistent with the accumulation of unrepaired lesions. Longevity was only compromised, if the apn-1(RNAi) animals were challenged with the DNA damaging agents. We showed that apn-1(RNAi) knockdown suppressed formation of apoptotic corpses in the germline caused by an overburden of AP sites generated from uracil DNA glycosylase mediated removal of misincorporated uracil. Finally, we showed that depletion of APN-1 by RNAi partially rescued the lethality resulting from uracil misincorporation, suggesting that APN-1 is an important AP endonuclease for repair of misincorporated uracil.     

The role of hydrochory in structuring riparian and wetland vegetation

Hydrochory, or the passive dispersal of organisms by water, is an important means of propagule transport, especially for plants. During recent years, knowledge about hydrochory and its ecological consequences has increased considerably and a substantial body of literature has been produced. Here, we review this literature and define the state of the art of the discipline. A substantial proportion of species growing in or near water have propagules (fruits, seeds or vegetative units) able to disperse by water, either floating, submerged in flowing water, or with the help of floating vessels. Hydrochory can enable plants to colonize sites out of reach with other dispersal vectors, but the timing of dispersal and mechanisms of establishment are important for successful establishment. At the population level, hydrochory may increase the effective size and longevity of populations, and control their spatial configuration. Hydrochory is also an important source of species colonizing recruitment‐limited riparian and wetland communities, contributing to maintenance of community species richness. Dispersal by water may even influence community composition in different landscape elements, resulting in landscape‐level patterns. Genetically, hydrochory may reduce spatial aggregation of genetically related individuals, lead to high gene flow among populations, and increase genetic diversity in populations receiving many propagules. Humans have impacted hydrochory in many ways. For example, dams affect hydrochory by reducing peak flows and hence dispersal capacity, altering the timing of dispersal, and by presenting physical barriers to dispersal, with consequences for riverine plant communities. Hydrochory has been inferred to be an important vector for the spread of many invasive species, but there is also the potential for enhancing ecosystem restoration by improving or restoring water dispersal pathways. Climate change may alter the role of hydrochory by modifying the hydrology of water‐bodies as well as conditions for propagule release and plant colonization.     

The bioemulsifier alasan: role of protein in maintaining structure and activity

Alasan, the bioemulsifier of Acinetobacter radioresistens KA53, is a high-molecular-mass complex of polysaccharide and protein. Enrichment culture was used to isolate a bacterial strain that grew on alasan as the sole source of carbon and energy, causing the loss of the protein portion of alasan, as well as the emulsifying activity. The degradation was mediated by extracellular proteinases/alasanases. One of these enzymes, referred to as alasanase II, was purified to homogeneity. Alasanase II, as well as pronase, inactivated alasan, whereas a polysaccharide-degrading enzyme mixture, snail juice, had no effect on emulsifying activity. Deproteinization of alasan with phenol yielded a viscous polysaccharide with no emulsifying activity. Heating alasan to 50 °C led to a 2.5-fold irreversible increase in viscosity with no change in emulsifying activity. Heating to 60°–90 °C caused a drop in viscosity and a 5.8-fold increase in emulsifying activity. The deproteinized alasan showed no increase in emulsifying activity and only small changes in viscosity when heated. Received: 31 October 1997 / Accepted: 29 November 1997     

Sprouting in temperate trees: A morphological and ecological review

Sprouting in trees, which results in the production of secondary trunks, is an induced response to injury or to a dramatic change in surrounding environmental conditions. This article reviews the forestry and ecology literature to produce an integrated view of the role of sprouting in both disturbed habitats and closed-canopy forests. Sprouting is a universal attribute of temperate angiosperm trees through the sapling stage of development but is much less common among gymnosperms. Four basic types of sprout morphologies are described: collar sprouts from the base of the trunk, sprouts from specialized underground stems (lignotubers and rhizomes), sprouts from roots, and opportunistic sprouts from layered branches. In a survey of 68 species of trees native to northeastern North America, 41% were found to retain the ability to sprout from the collar into adulthood; 26% sprout from branch layers under natural conditions; and 25% have the capacity to form root suckers. Sprouting in seedlings promotes their survival under a variety of stressful conditions, including suppression by canopy trees, herbivory, site exposure, and desiccation. In contrast, sprouting in mature trees extends the life span of the individual following damage and, in the case of root-suckering species, promotes the colonization of new ground. Although the sprouting of mature trees is more conspicuous than the sprouting of seedlings, its ecological significance is not as great. As a broad generalization, species that grow in stressful sites or sites with frequent disturbances are likely to sprout more vigorously and to retain the sprouting ability longer than are species that grow in less stressful sites or sites with less frequent disturbance. Near the limits of a species’ altitudinal or latitudinal range, the production of basal sprouts, root suckers, rhizomes, and/or branch layers allows trees to spread into adjacent areas, thereby circumventing the difficulties associated with seedling establishment.     

林下层植被对上层乔木的影响研究综述

植物间交互作用在植物群落和生态系统的组成、结构、功能等方面发挥着重要作用.在过去的森林生态系统研究中,更多地关注上层乔木之间的相互作用或乔木层对下层植被的影响,较少研究林下层植被对上层乔木生理生态和生长的影响.本文综述了去除林下层植被对土壤理化性质、土壤动物区系、凋落物分解及上层乔木生理生态和生长的影响,讨论了外界干扰对林下植被-乔木层竞争关系的影响,提出林下植被对上层乔木影响的生理生态学机理概念模型.研究区域、乔木林龄、地力条件、林下植物种类是影响林下层植被-乔木层竞争关系的重要因素.     

The role of autophagy in maintaining intestinal mucosal barrier

The intestinal mucosal barrier is the first line to defense against luminal content penetration and performs numerous biological functions. The intestinal epithelium contains a huge surface that is lined by a monolayer of intestinal epithelial cells (IECs). IECs are dominant mediators in maintaining intestinal homeostasis that drive diverse functions including nutrient absorption, physical segregation, secretion of antibacterial peptides, and modulation of immune responses. Autophagy is a cellular self-protection mechanism in response to various stresses, and accumulating studies have revealed its importance in participating physiological processes of IECs. The regulatory effects of autophagy depend on the specific IEC types. This review aims to elucidate the myriad roles of autophagy in regulating the functions of different IECs (stem cells, enterocytes, goblet cells, and Paneth cells), and present the progress of autophagy-targeting therapy in intestinal diseases. Understanding the involved mechanisms can provide new preventive and therapeutic strategies for gastrointestinal dysfunction and diseases.     

Invasion patterns in riparian habitats: The role of anthropogenic pressure in temperate streams

The riparian flora and the level of invasion in the rivers of the Cantabric watershed in Spain were studied in relation to the ecological status and the anthropogenic pressure. The level of invasion was also analyzed in different riparian habitats: forests, river bars and man-made slopes. For this purpose, 18 sites were sampled and a list of native and alien plant species was made along a 100-m strip at each site. The habitat/s where alien species were found and their abundance per habitat and in the total area were also indicated. Out of 112 alien taxa found, 51 were classified as invasive. Exotic plants native to America were the most common (35%). The level of invasion was significantly higher in the sampling sites subject to high levels of hydrological and morphological disturbances, proxies of the anthropogenic pressure. River bars and man-made slopes supported similar number of alien plant species, higher than forests. We suggest that disturbance in river banks should be minimized as much as possible in order to diminish the risk of invasion.     

Dynamics of leaf litter accumulation and its effects on riparian vegetation: A review

The total production of plant litter and the proportion of leaf litter are higher in riparian corridors than in upland ecosystems throughout the world. Periodical water-level fluctuation is believed to be the major cause of these differences. During flood periods, much plant litter is redistributed locally and between regions, following erosion, transport, and deposition of litter. The importance of litter redistribution varies with factors such as flood regime, topography, and vegetation. Litter from the riparian corridor is usually a major constituent of the litter transported by the river. The decomposition of litter is faster in riparian corridors than in upland systems due to a higher rate of leaching and a higher decomposer activity. Relative warmth and soil fertility may also enhance litter decomposition in riparian corridors. In general, accumulated litter affects plants physically by burying them, chemically by adding nutrients and phytotoxins, and biologically by adding diaspores. The physical impact of a certain amount of litter may be weaker in riparian corridors than in uplands because the rapid decomposition reduces the time that litter is present. In other words, higher amounts of litter are needed to affect riparian vegetation than are needed to affect other types of vegetation. The nutrient content of riverborne litter is reduced by leaching, but dissolved nutrients from litter might still reach the riparian vegetation, e.g., by adsorbing to inorganic particles. Phytotoxins are probably unimportant in riparian systems. The input to the riparian corridor of plant diaspores, borne by litter packs in the river, may be large. Indirect biological effects of litter, including its diaspores, are the attracting of animals and microbes that may influence the plant community, and the creation of bare soil for plant colonization.     

The role of visual information in maintaining postural stability after the maximum exercise for the upper and lower limb muscles

The postural stability on a seesaw generating anterior–posterior instability with the eyes open (EO) and then the eyes closed (EC) in young healthy subjects (n = 28) before and 6 min after the maximum bicycle exercise (Wingate test) performed using lower limbs (“leg exercise”) or upper limbs (“hand exercise”) was investigated. It was found that “hand exercise” caused the same increase in average velocity (V, mm/s) and in the average range of sway of the centre of pressure (Qy, mm) as “leg exercise.” However, the duration of V recovery (EC: 2 min 30 s and 50 s; EO: 60 s and 40 s after “leg exercise” and “hand exercise,” respectively) and Qy (EC: 1 min 10 s and 30 s after “leg exercise” and “hand exercise,” respectively; EO: no changes from baseline) was shorter after “hand exercise.” In the presence of visual information, the increment in V decreased more than 2 times after “leg exercise” (+100.5% and + 40.5%, p < 0.01 for EC and EO, respectively) and after “hand exercise” (+73.0% and +30.3%, p < 0.01 for EC and EO, respectively). Moreover, Qy after both exercises remained at the initial level under EO conditions but significantly increased under EC conditions (+42.8%, p < 0.01 after “leg exercise” and +40.3%, p < 0.01 after “hand exercise”). Thus, the maximum exercise for the muscles of the upper limbs causes the same reduction in postural stability as analogous exercise for the muscles of the lower limbs, but the recovery period after “hand” exercise was shorter. The presence of visual information allows the baseline maintenance of postural stability and significantly reduces the strain of postural regulation while standing on a movable support after the maximum “leg exercise” and “hand exercise.”