Simulated effects of herb competition on planted Quercus faginea seedlings in Mediterranean abandoned cropland

Abstract. We tested simulated effects of herb competition on the performance of planted seedlings of Quercus faginea ssp. faginea in Mediterranean abandoned cropland. We produced three types of environment with respect to herb competition: absence of competition (AC), below‐ground competition (BGC), and total competition (TC). We assessed the performance of Q. faginea seedlings in each treatment in five ways: (1) seedling mortality, (2) leaf length and total plant leaf area, (3) water potential, (4) total biomass and biomass allocation, and (5) non‐structural carbohydrate storage in different plant organs. We also measured (6) soil moisture at different depths and (7) biomass production of herbs. The TC treatment reduced water availability more than the BGC treatment, in agreement with the most pronounced water stress in seedlings under TC conditions. BGC and TC treatments showed a high and similar seedling mortality, which was one order of magnitude higher than that in the AC treatment. Competition treatments affected glucose concentration in both shoots and roots, and followed the rank TC > BGC > AC. Q. faginea seedlings might compensate a lower water availability through glucose accumulation in leaves to reduce the osmotic potential. There was a maximum starch concentration in the BGC treatment that hints that a moderate resource limitation would limit tissue growth but not carbon assimilation. We conclude that the negative effects of herbs on Q. faginea seedlings are mostly a result of competition for water, and that this competition is noticeable since the earliest stages of the establishment. Complete weed removal is a technique that would strongly improve seedling survivorship.     

Response diversity in Mediterranean coralligenous assemblages facing climate change: Insights from a multispecific thermotolerance experiment

Climate change threatens coastal benthic communities on a global scale. However, the potential effects of ongoing warming on mesophotic temperate reefs at the community level remain poorly understood. Investigating how different members of these communities will respond to the future expected environmental conditions is, therefore, key to anticipating their future trajectories and developing specific management and conservation strategies. Here, we examined the responses of some of the main components of the highly diverse Mediterranean coralligenous assemblages to thermal stress. We performed thermotolerance experiments with different temperature treatments (from 26 to 29°C) with 10 species from different phyla (three anthozoans, six sponges and one ascidian) and different structural roles. Overall, we observed species‐specific contrasting responses to warming regardless of phyla or growth form. Moreover, the responses ranged from highly resistant species to sensitive species and were mostly in agreement with previous field observations from mass mortality events (MMEs) linked to Mediterranean marine heat waves. Our results unravel the diversity of responses to warming in coralligenous outcrops and suggest the presence of potential winners and losers in the face of climate change. Finally, this study highlights the importance of accounting for species‐specific vulnerabilities and response diversity when forecasting the future trajectories of temperate benthic communities in a warming ocean.     

The 3D physical-biological model study in the Egyptian Mediterranean coastal sea

The ecosystem of the Egyptian Mediterranean coastal area between longitudes 29°45 E and 33°45 E was seasonally investigated. The obtained data sets for a variety of environmental variables were previously interpolated over the studied area, and used in the coupled physical-biological model Fin-Est. Here, the model has been implemented to solve the central problems in case of modeling local areas and the handling of open boundaries and initial conditions, which almost have significant influence on the results, of both the hydrodynamic and the ecosystem models calculation. In the present study, a multi-step calculations procedure was used in applying the 3 D coupled model at first for the entire Egyptian Mediterranean coastal area. Then, it runs for local areas obtaining the initial conditions and the open boundary ones from larger area calculations. In particular, the zoom-in approach was used for the detailed study of the Eastern Harbour of Alexandria city-Egypt (model grid step = 50 m.) selected from the larger Alexandria Sea (model grid step = 1.25 Km), which in turn was chosen from the Egyptian Mediterranean coastal area (model grid step = 12.5 km). The sensitivity of the model simulations to both physical and biological main factors of the studied areas is tested. Both climatic conditions and land sources effects are considered among the model forcing factors. The resultant simulations are compared with the actual measured values of the parameters. The model sensitivity test results are discussed in the context of the model's capabilities and limitations, and with reference to the available knowledge of the ecosystems of the study areas.     

Effects of drought and shade on nitrogen cycling in the leaves and canopy of Mediterranean Quercus seedlings

Nitrogen (N) withdrawn from leaves before abscission can help to supply N requirements in plants of nutrient poor habitats. Besides N shortage, Mediterranean Quercus seedlings must face water and light stresses. However, there is little information on the influence of these stresses in the nitrogen resorption efficiency (NRE) at leaf level, and none at canopy level. We tested in two separated experiments how changes in water and light availability affect NRE and its components at both levels in seedlings of two evergreen oaks [Quercus coccifera L. and Quercus ilex subsp. ballota (Desf.) Samp] and in a semi-deciduous one (Quercus faginea Lam.). In the summer drought experiment seedlings were left to dehydrate to ?2.5 and to ?0.5 MPa (water stress and control, respectively) before watering. In the light experiment seedlings were grown at 100, 20 and 5% of full sunlight. The leaf abscission pattern was monitored and N content, N loss and NRE were calculated in the two peaks of leaf abscission (spring and late summer). After one year of treatments summer drought had little effect on N resorption and its components at both leaf and canopy levels. Moderate shade increased NRE at leaf level in Q. faginea but this response vanished at canopy level. N loss at the leaf level was unaffected. Deep shade decreased N lost at the canopy level in spring but increased it in late summer. N resorption and N losses at the canopy level were lower at late summer than in spring, due to fewer leaves falling. This study highlights the importance of the scale on the study of nitrogen dynamics (leaf vs. whole canopy), as the scaling factor (amount of leaf shedding) also responds to environmental factors, either enhancing or reversing the effects found at leaf level.     

Buffered climate change effects in a Mediterranean pine species: range limit implications from a tree-ring study

Within-range effects of climatic change on tree growth at the sub-regional scale remain poorly understood. The aim of this research was to use climate and radial-growth data to explain how long-term climatic trends affect tree growth patterns along the southern limit of the range of Pinus nigra ssp. salzmannii (Eastern Baetic Range, southern Spain). We used regional temperature and precipitation data and measured sub-regional radial growth variation in P. nigra forests over the past two centuries. A dynamic factor analysis was applied to test the hypothesis that trees subjected to different climates have experienced contrasting long-term growth variability. We defined four representative stand types based on average temperature and precipitation to evaluate climate–growth relationships using linear mixed-effect models and multi-model selection criteria. All four stand types experienced warming and declining precipitation throughout the twentieth century. From the onset of the twentieth century, synchronised basal-area increment decline was accounted for by dynamic factor analysis and was related to drought by climate–growth models; declining basal-area increment trends proved stronger at lower elevations, whereas temperature was positively related to growth in areas with high rainfall inputs. Given the contrasting sub-regional tree-growth responses to climate change, the role of drought becomes even more complex in shaping communities and affecting selection pressure in the Mediterranean mountain forests. Potential vegetation shifts will likely occur over the dry edge of species distributions, with major impacts on ecosystem structure and function.     

气候变化背景下1964-2015年秦岭植物物候变化

以1964-2015年物候观测数据为基础,选取17种含乔木、灌木及藤本树种为研究对象,分析探讨了气候变化背景下秦岭地区植物物候变化规律及其差异性。结果表明:(1)52年来,秦岭地区物候始期普遍呈提前趋势,提前速率1.2d/10a,物候末期普遍呈推迟趋势,推迟速率3.5d/10a,物候生长期普遍延长;(2)秦岭地区物候突变发生于20世纪80年代,始期于1985年,末期于1984年。突变后,物候特征发生了显著变化,始期的提前速率较突变前显著加快,末期由突变前的提前趋势转变为极显著的推迟趋势,且变化速率和显著性均高于始期;始期与末期变化均表现出"趋同效应";物候年代际变化趋势显示,始期自2001-2005年起提前速率减缓,植物对气候变化的响应表现出适应性及滞后性。(3)秦岭物候变化存在树种差异,3大类树种始期的提前速率呈藤本、乔木、灌木依次增大,而末期的推迟速率则呈藤本、灌木、乔木依次减小。(4)秦岭物候变化存在南北差异,北坡始期的提前速率均高于南坡,而南坡末期的推迟速率均高于北坡。     

Rice morphogenesis and plant architecture: measurement, specification and the reconstruction of structural development by 3D architectural modelling

BACKGROUND AND AIMS: The morphogenesis and architecture of a rice plant, Oryza sativa, are critical factors in the yield equation, but they are not well studied because of the lack of appropriate tools for 3D measurement. The architecture of rice plants is characterized by a large number of tillers and leaves. The aims of this study were to specify rice plant architecture and to find appropriate functions to represent the 3D growth across all growth stages. METHODS: A japonica type rice, 'Namaga', was grown in pots under outdoor conditions. A 3D digitizer was used to measure the rice plant structure at intervals from the young seedling stage to maturity. The L-system formalism was applied to create '3D virtual rice' plants, incorporating models of phenological development and leaf emergence period as a function of temperature and photoperiod, which were used to determine the timing of tiller emergence. KEY RESULTS: The relationships between the nodal positions and leaf lengths, leaf angles and tiller angles were analysed and used to determine growth functions for the models. The '3D virtual rice' reproduces the structural development of isolated plants and provides a good estimation of the tillering process, and of the accumulation of leaves. CONCLUSIONS: The results indicated that the '3D virtual rice' has a possibility to demonstrate the differences in the structure and development between cultivars and under different environmental conditions. Future work, necessary to reflect both cultivar and environmental effects on the model performance, and to link with physiological models, is proposed in the discussion.     

Computing competition for light in the GREENLAB model of plant growth: a contribution to the study of the effects of density on resource acquisition and architectural development

BACKGROUND AND AIMS: The dynamical system of plant growth GREENLAB was originally developed for individual plants, without explicitly taking into account interplant competition for light. Inspired by the competition models developed in the context of forest science for mono-specific stands, we propose to adapt the method of crown projection onto the x-y plane to GREENLAB, in order to study the effects of density on resource acquisition and on architectural development. METHODS: The empirical production equation of GREENLAB is extrapolated to stands by computing the exposed photosynthetic foliage area of each plant. The computation is based on the combination of Poisson models of leaf distribution for all the neighbouring plants whose crown projection surfaces overlap. To study the effects of density on architectural development, we link the proposed competition model to the model of interaction between functional growth and structural development introduced by Mathieu (2006, PhD Thesis, Ecole Centrale de Paris, France). KEY RESULTS AND CONCLUSIONS: The model is applied to mono-specific field crops and forest stands. For high-density crops at full cover, the model is shown to be equivalent to the classical equation of field crop production (Howell and Musick, 1985, in Les besoins en eau des cultures; Paris: INRA Editions). However, our method is more accurate at the early stages of growth (before cover) or in the case of intermediate densities. It may potentially account for local effects, such as uneven spacing, variation in the time of plant emergence or variation in seed biomass. The application of the model to trees illustrates the expression of plant plasticity in response to competition for light. Density strongly impacts on tree architectural development through interactions with the source-sink balances during growth. The effects of density on tree height and radial growth that are commonly observed in real stands appear as emerging properties of the model.     

Fossil round karren from Cyprus: a latest Miocene record of a humid-temperate climate in the eastern Mediterranean

Round karren represent a typical karst landform in humid regions. Since they only form beneath organic-rich soil and become rapidly destroyed after exhumation, their preservation potential in the geological record is, however, low. Herein, we describe pristine fossil round karren from a late Messinian karrenfeld that is incised into a fault scarp at the northwestern margin of the Polis Graben in NW Cyprus (Eastern Mediterranean Sea). The karren indicate that humid temperate climate conditions with at least seasonal rainfalls and vegetation which decomposed into acid humus occurred at the end of the Messinian salinity crisis on Cyprus. Rapid drowning due to the Zanclean transgression ceased karstification at the Miocene–Pliocene boundary and preserved the original round karren morphology.     

3D Evaluation of the acetabular coverage assessed by biplanar X-rays or single anteroposterior X-ray compared with CT-scan

Considering the increasing development of three dimensional (3D) imaging, the 3D assessment of the acetabular coverage is to become the most interesting tool for the detection of acetabular pathologies. Biplanar X-rays based methods allow a 3D reconstruction of the hip with a reduced radiation dose. This study proposes a 3D assessment method of the acetabular coverage from biplanar X-rays or from an anteroposterior X-ray (conventional clinical imaging). An in vitro evaluation of the method was performed on six hip joints in comparison with computed tomography. The global coverage, the local coverage and the acetabular rim orientation were estimated in 3D. The mean global acetabular coverage was 40% with an estimated mean accuracy of 1.3% for the biplanar X-rays based method. This study evaluated a 3D assessment method of the acetabular coverage from biplanar X-rays or anteroposterior X-ray and open the way for clinical in vivo applications.     

3D Evaluation of the acetabular coverage assessed by biplanar X-rays or single anteroposterior X-ray compared with CT-scan

Considering the increasing development of three dimensional (3D) imaging, the 3D assessment of the acetabular coverage is to become the most interesting tool for the detection of acetabular pathologies. Biplanar X-rays based methods allow a 3D reconstruction of the hip with a reduced radiation dose. This study proposes a 3D assessment method of the acetabular coverage from biplanar X-rays or from an anteroposterior X-ray (conventional clinical imaging). An in vitro evaluation of the method was performed on six hip joints in comparison with computed tomography. The global coverage, the local coverage and the acetabular rim orientation were estimated in 3D. The mean global acetabular coverage was 40% with an estimated mean accuracy of 1.3% for the biplanar X-rays based method. This study evaluated a 3D assessment method of the acetabular coverage from biplanar X-rays or anteroposterior X-ray and open the way for clinical in vivo applications.     

辽东栎幼苗对干旱和去叶的生态反应的初步研究

幼苗阶段是植物种群生活史中亏损最严重的时期之一。通过干旱处理和去叶试验研究了辽东栎幼苗的生态反应。结果表明：⑴干旱处理显著降低了单叶面积、叶面积比和叶比重,从而也降低了单株生物量,但根比重却较对照组有显著上升;⑵去叶显著提高了单株叶数、叶面积比和叶比重,尽管单株生物量只稍高于对照组,这说明辽东栎在去叶后有一定的补偿能力。     

Tritrophic interactions in the context of climate change: a model of grasses, cereal Aphids and their parasitoids

Biologists have been challenged to envisage the likely consequences of increases in atmospheric carbon dioxide concentrations, and the suite of accompanying environmental changes (e.g. rising temperature, changing rainfall patterns, etc.) on our biotic systems. Research to date on plant responses has been extensive, but work on herbivore responses has been less complete, and work on higher trophic levels nearly nonexistent. One group of herbivores that has been reasonably well studied is aphids, and at least for this group, researchers have even begun to investigate responses at higher trophic levels, to include parasitoids. In this paper, we develop a mechanistic mathematical model of the general interaction between grasses, cereal aphids and their parasitoids. We used this model to investigate the interacting effects of rising CO₂ and temperature. The model suggests that, while parasitoids do have an impact on the aphid colony population dynamics, they do not fundamentally alter the aphid response to climate change. The model predicts that for both aphids and their parasitoids, the population responses to combined effects of elevated CO₂ and temperature will be more similar to current ambient conditions than we might expect from the individual effects of CO₂ or temperature increases. This interaction has important consequences for the interpretation of results from experiments that study only the effect of rising CO₂.     

Mathematical modeling of pulmonary tuberculosis therapy: Insights from a prototype model with rifampin

There is a critical need for improved and shorter tuberculosis (TB) treatment. Current in vitro models of TB, while valuable, are poor predictors of the antibacterial effect of drugs in vivo. Mathematical models may be useful to overcome the limitations of traditional approaches in TB research. The objective of this study was to set up a prototype mathematical model of TB treatment by rifampin, based on pharmacokinetic, pharmacodynamic and disease submodels.The full mathematical model can simulate the time-course of tuberculous disease from the first day of infection to the last day of therapy. Therapeutic simulations were performed with the full model to study the antibacterial effect of various dosage regimens of rifampin in lungs.The model reproduced some qualitative and quantitative properties of the bactericidal activity of rifampin observed in clinical data. The kill curves simulated with the model showed a typical biphasic decline in the number of extracellular bacteria consistent with observations in TB patients. Simulations performed with more simple pharmacokinetic/pharmacodynamic models indicated a possible role of a protected intracellular bacterial compartment in such a biphasic decline.This modeling effort strongly suggests that current dosage regimens of RIF may be further optimized. In addition, it suggests a new hypothesis for bacterial persistence during TB treatment.     

Impact of climate changes from Middle Miocene onwards on evolutionary diversification in Eurasia: Insights from the mesobuthid scorpions

The aridification from Middle Miocene onwards has transformed the Asian interior into an arid environment, and the Pleistocene glacial–interglacial oscillations exerted further ecological impact. Therefore, both aridification and glaciation would have considerably influenced the evolution of many mid‐latitude species in temperate Asia. Here, we tested this perspective by a phylogeographic study of the mesobuthid scorpions across temperate Asia using one mitochondrial and three nuclear genes. Concordant mitochondrial and nuclear gene trees were obtained, which are consistent with species tree inferred using a Bayesian approach. The age of the most recent common ancestor (MRCA) of all the studied scorpions was estimated to be 12.49 Ma (late Middle Miocene); Mesobuthus eupeus diverged from the clade composing Mesobuthus caucasicus and Mesobuthus martensii in early Late Miocene (10.21 Ma); M. martensii diverged from M. caucasicus at 5.53 Ma in Late Miocene. The estimated MRCA ages of M. martensii and the Chinese lineage of M. eupeus were 2.37 and 0.68 Ma, respectively. Central Asia was identified as the ancestral area for the lineage leading to M. martensii and M. caucasicus and the Chinese lineage of M. eupeus. The ancestral habitat of the genus Mesobuthus is likely to have been characterized by an arid environment; a shift towards more humid habitat occurred in the MRCA of M. martensii and a lineage of M. caucasicus, finally leading to the adaptation of M. martensii to humid environment. Our data strongly support the idea that the stepwise intensified aridifications from Mid‐Miocene onwards drove the diversification of mesobuthid scorpions, and suggest that M. martensii and M. eupeus observed today in China originated from an ancestral lineage distributed in Central Asia. Both the colonization and the ensuing evolution of these species in East Asia appear to have been further moulded by Quaternary glaciations.     

Mammary transmission of caprine arthritis encephalitis virus: a 3D model for in vitro study

Transmission of Caprine Arthritis Encephalitis virus (CAEV) from the mother to offspring is principally mediated by infected cells from colostrum and milk. The infection of the dam is often sub-clinical, and results in increased cellularity of milk, sometimes exacerbated by bacterial co-infections. Although monocytes are the major viral host cells, several other cell types, including epithelial mammary cells, fibroblasts and endothelial cells show low levels of in vivo infection. In vitro, however, all phenotypes of mammary gland cells are individually highly sensitive to CAEV infection. This suggests that local mechanisms act to control viral expression. Our goal is to analyse the mechanisms regulating local virus infection, including the physiological status of the mammary gland and bacterial co-infections. In this work, we present the development of a model for the in vitro reconstitution of mammary gland tissue using 3D cultures in Matrigel. Mononuclear cells from the blood are added to the 3D cultures in vitro. In these experimental conditions, the mammary cells spontaneously organize into mammospheres. Blood leucocytes migrate into the culture gel, and localize particularly at the periphery of the mammospheres. Mammospheres were susceptible to infection in vitro by CAEV, as shown by a cytopathic effect and expression of late CAEV antigen p30. This model will allow the in vitro study of virus expression, transfer of infection to mammary gland cells and interactions between the mammary gland cells, infected monocytes and immunocompetent cells. It will allow the study of mechanisms participating in the control of passage of pathogens into milk, according to the physiological and CAEV-infection status of the animal, microenvironment and the presence of bacterial co-infections.     

基于结构方程模型的高寒生态脆弱区农户的气候变化感知研究——以甘南高原为例

农户对气候变化的感知是其适应行动选择的基础,弄清楚影响农户气候变化感知的关键因素,辨明农户气候变化感知的形成机制,对制定有效的适应策略至关重要。以甘南高原为研究区,基于539份入户调查数据,构建了路径模型,分析了影响农牧户气候变化感知的关键因素及其作用路径,结果发现:(1)客观适应能力对农牧户的气候变化风险感知及适应感知有显著的正向影响;(2)气候变化信息对农牧户的气候变化风险感知及适应感知有显著的正向影响,它还通过客观适应能力间接影响农牧户的气候变化感知;(3)社会话语信任度对农牧户的气候变化风险感知及适应感知有显著的正向影响,适应激励对农牧户的气候变化适应感知有显著的正向影响,但对风险感知产生显著的负向影响,同时,社会话语信任度及适应激励均通过气候变化信息及客观适应能力而间接影响农牧户的气候变化感知。最后,基于影响甘南高原农牧户气候变化感知的关键因素,提出了提高农牧户的气候变化认知水平及气候变化适应行为有效性的对策建议。