Recruitment failure in Florida Keys <Emphasis Type="Italic">Acropora palmata,</Emphasis> a threatened Caribbean coral

Recovery of Acropora palmata from its currently imperiled status depends on recruitment, a process which is poorly documented in existing Caribbean coral population studies. A. palmata is thought to be well adapted to proliferate through the recruitment of fragments resulting from physical disturbances, such as moderate intensity hurricanes. This study monitored fifteen 150 m² fixed study plots on the upper Florida Keys fore-reef for asexual and sexual recruitment from 2004 to 2007. Between July and October 2005, 4 hurricanes passed by the Florida Keys, producing wind speeds on the reef tract of 23 to 33 m s⁻¹. Surveys following the hurricanes documented an average loss of 52% estimated live tissue area within the study plots. The percentage of “branching” colonies in the population decreased from 67% to 42% while “remnant” colonies (isolated patches of tissue on standing skeleton) increased from 11% to 27%. Although some detached branches remained as loose fragments, more than 70% of the 380 fragments observed in the study plots were dead or rapidly losing tissue 3 weeks after Hurricane Dennis. Over the course of the study, only 27 fragments became attached to the substrate to form successful asexual recruits. Meanwhile, of the 18 new, small encrusting colonies that were observed in the study, only 2 were not attributable to asexual origin (i.e., remnant tissue from colonies or fragments previously observed) and are therefore possible sexual recruits. In summary, the 2005 hurricane season resulted in substantial loss of A. palmata from the upper Florida Keys fore-reef from a combination of physical removal and subsequent disease-like tissue mortality, and yielded few recruits of either sexual or asexual origin. Furthermore, the asexual and sexual fecundity of the remaining population is compromised for the near future due to the lack of branches (i.e., “asexual fecundity”) and overall loss of live tissue.     

Genet structure and determinants of clonal structure in a temperate deciduous woodland herb, Uvularia perfoliata

1 We used isozyme variation to examine the genet structure of Uvularia perfoliata patches in gap and closed canopy habitats in a temperate deciduous forest in Maryland, USA.
2 A large patch in a gap habitat was composed of a small number of widely spread genets with many ramets, and a large number of genets with more restricted distribution and few ramets. Genets with many ramets were patchily distributed at a metre scale. Analysis of genet structure on a scale of square centimetres, however, revealed that the genets were highly intermingled with no clear boundaries between them. The presence at both scales of sampling of many genets with unique multilocus genotypes indicated continuing genet recruitment within the population.
3 In the closed canopy habitat, the patches examined were each composed of a single unique multilocus genotype, suggesting that each had developed by asexual propagation following the establishment of a single genet.
4 The clonal structure of U. perfoliata patches in both gap and closed canopy habitats therefore appears to depend on recruitment patterns of genets. Populations in closed canopy habitats are characterized by a 'waiting' strategy, in which asexual ramet production maintains populations until genet recruitment by seed production can occur under the more optimal conditions associated with canopy gaps. Extended sampling suggests that the genetic diversity of U. perfoliata populations is primarily controlled by the disturbance regime of the forest canopy.     

Demographic aspects of the soft coral Sinularia flexibilis leading to local dominance on coral reefs

We evaluated the role that demography may play in the formation of local aggregations of Sinularia flexibilis (Quoy & Gaimard, 1833), a soft coral that commonly dominates inshore coral reefs of the Great Barrier Reef (GBR), Australia. Two populations on inshore reefs of the Palm Islands were censused once a year for 3 years, starting 10 mo after the extensive bleaching mortality in early 1998. Larger colonies became more prevalent over time; mean colony size increasing by 35%, from 276 cm² in 1998 to 373 cm² in 2000. Growth rates were size dependent, with smaller colonies growing proportionally faster than larger colonies. Change in size relative to initial size indicated an expected mean annual growth of 128 cm² for a 50-cm² colony. Zero growth was predicted at 532±21cm², with colonies larger than this likely to undergo fission or shrink. Forty-three percent of colonies were undergoing fission at any time at both localities. Most new colonies were produced by fission (70%, n=285), with the remainder produced by the recruitment of sexually produced larvae (19%) or by colony translocation (11%). The sexual and asexual recruitment rates were 0.24 and 1.0 recruits m- ² year−¹, respectively. Opportunistic recruitment and rapid growth following disturbances are commonly assumed to be the mechanisms leading soft corals to dominate locally. In this study, these mechanisms operated more slowly than expected, with no net change in population size.     

CONTRIBUTIONS OF SEXUAL AND ASEXUAL REPRODUCTION TO POPULATION STRUCTURE IN THE CLONAL SOFT CORAL,ALCYONIUM RUDYI

Numerous studies of population structure in sessile clonal marine invertebrates have demonstrated low genotypic diversity and nonequilibrium genotype frequencies within local populations that are monopolized by relatively few, highly replicated genets. All of the species studied to date produce planktonic sexual propagules capable of dispersing long distances; despite local genotypic disequilibria, populations are often panmictic over large geographic areas. The population structure paradigm these species represent may not be typical of the majority of clonal invertebrate groups, however, which are believed to produce highly philopatric sexual propagules. I used allozyme variation to examine the population structure of the temperate soft coral, Alcyonium rudyi, a typical clonal species whose sexually produced larvae and asexually produced ramets both have very low dispersal capabilities. Like other clonal plants and invertebrates, the local population dynamics of A. rudyi are dominated by asexual reproduction, and recruitment of new sexually produced genets occurs infrequently. As expected from its philopatric larval stage, estimates of genetic differentiation among populations of A. rudyi were highly significant at all spatial scales examined (mean θ = 0.300 among 20 populations spanning a 1100-km range), suggesting that genetic exchange seldom occurs among populations separated by as little as a few hundred meters. Mapping of multilocus allozyme genotypes within a dense aggregation of A. rudyi ramets confirmed that dispersal of asexual propagules is also very limited: members of the same genet usually remain within < 50 cm of one another on the same rock surface. Unlike most previously studied clonal invertebrates, populations of A. rudyi do not appear to be dominated by a few widespread genets: estimates of genotypic diversity (G_o) within 20 geographically distinct populations did not differ from expectations for outcrossing, sexual populations. Despite theoretical suggestions that philopatric dispersal combined with typically small effective population sizes should promote inbreeding in clonal species, inbreeding does not appear to contribute significantly to the population structure of A. rudyi. Genet genotype frequencies conformed to Hardy-Weinberg expectations in all populations, and inbreeding coefficients (f) were close to zero. In general, the population structure of A. rudyi did not differ significantly from that observed among outcrossing sexual species with philopatric larval dispersal. Age estimates suggest, however, that genets of A. rudyi live for many decades. Genet longevity may promote high genotypic diversity within A. rudyi populations and may be the most important evolutionary consequence of clonal reproduction in this species and the many others that share its dispersal characteristics.     

Disease in scleractinian corals: a new problem in the reef at Cayo Sombrero, Morrocoy National Park, Venezuela?

At the beginning of 1996 coral reefs in Morrocoy National Park, Venezuela, suffered an unprecedented mass mortality event. As a consequence, live coral cover dropped to 2-10%. One of the few reefs that kept live coral cover over 35% was Cayo Sombrero; nonetheless, the presence of some coral diseases has been detected within the past 2 years, representing a new source of coral mortality. Due to this situation, this study started a monitoring program on the incidence of coral diseases and syndromes in the reef of Cayo Sombrero. The CARICOMP protocol was used in order to evaluate reef health. Ten parallel band-transects (20 x 2m) where established at two depth intervals: Five between 3-8 m and five between 8-12 m, and the frequency of both, healthy and unhealthy colonies of each coral species was recorded along each band transect. In addition to other sources of coral damage (predation, siltation, etc), significant differences in disease incidence between the two depths intervals were tested with a Kruskall-Wallis test. The main problems observed were coral diseases such as yellow band (4.2%), dark spots (1.61%) and white plague-II (1.4%), mainly affecting Montastraea faveolata, M. annularis and Siderastrea siderea. Siltation, affecting massive colonies, such as Colpophyllia natans and Diploria strigosa; algae overgrowth, predation, anchor damage, and bleaching. Significant differences were found in the incidence of unhealthy (Kruskall-Wallis, p < 0.05) bleached (Kruskall-Wallis, p < 0.05) and colonies affected by siltation (Kruskall-Wallis, p < 0.05). More than 60% of the 585 coral colonies surveyed at both depths were found to be healthy, indicating that the Cayo Sombrero reef is still in good conditions compared to other localities in the Park. This study stresses the need to conduct early monitoring programs that survey coral disease incidence as a source of mortality for this coral reef.     

Reef community structure at Falcón, Venezuela, before and after a mass mortality

Morrocoy National Park used to be considered the most important continental coral reef of Venezuela. However, in January of 1996, there was a massive mortality of the benthic organisms for unknown reasons. The coral reef community was monitored since 1995, the year before the event, and yearly after that, until June 1999, by sampling linear transects and quadrats. A total of 26 hard corals were recorded in the study site (Playa Mero) in 1995 (36.56% cover), which already had some deterioration because 90.86% of the living coral cover was represented basically by four species, M. annularis with 51.36%, Colpophyllia natans with 18.22%, Agaricia agaricites with 11.58% and Porites porites with 9.70%. Three months after the event, living coral cover was only 4.84% and algae, particularly Dyctiota spp. covered most of the surface (81.89%). Benthic organisms suffered massive mortality over the whole depth gradient and in most park reefs. Even after three years the reef community shows highly perturbed conditions, with 85% of the total cover represented by the categories: dead coral, dead coral overgrowth by algae and sand. From the initial coral richness of the area (26 species) only nine species were observed although in very low cover (<1%), except for M. annularis and M. franksi, which presented lightly higher percentages.     

Can Coral Cover be Restored in the Absence of Natural Recruitment and Reef Recovery?

With many coral reef areas being degraded whether by anthropogenic or natural causes, a search is on for resilient species of corals that can restore coral cover where needed, if coral reefs are to continue to provide adequate ecosystem services. A series of experiments were undertaken in two sites with different environmental attributes and substrates in a lagoonal area in the northwestern Philippines to test the potentials of a local species, Porites cylindrica, for reef rehabilitation. With the use of asexual fragmentation of donor colonies, different treatments were tested, particularly to determine if the species would survive on different substrates, that is, solid, massive versus digitate/anastomosing, dead colonies. The results after nearly 2 years of the experiment were extraordinarily successful, with survival of transplants ranging from a high of 98% to a low of 80% of colonies, resulting in extensive coral cover on both original and new or different substrate from the original. A subsequent observation after another 16 months showed the coral cover to have been complete or nearly complete in the experimental plots, with the transplanted colonies fusing, and with evident reef fish communities where there were none before. Had there been no intervention, it is highly likely that the reefs would have remained in a degraded state .     

Implications of coral harvest and transplantation on reefs in northwestern Dominica

In June, 2002, the government of Dominica requested assistance in evaluating the coral culture and transplantation activities being undertaken by Oceanographic Institute of Dominica (OID), a coral farm culturing both western Atlantic and Indo-Pacific corals for restoration and commercial sales. We assessed the culture facilities of OID, the condition of reefs, potential impacts of coral collection and benefits of coral transplantation. Coral reefs (9 reefs, 3-20 m depth) were characterized by 35 species of scleractinian corals and a live coral cover of 8-35%. Early colonizing, brooders such as Porites astreoides (14.8% of all corals), P. porites (14.8%), Meandrina meandrites (14.7%) and Agaricia agaricites (9.1%) were the most abundant corals, but colonies were mostly small (mean = 25 cm diameter). Montastraea annularis (complex) was the other dominant taxa (20.8% of all corals) and colonies were larger (mean = 70 cm). Corals (pooled species) were missing an average of 20% of their tissue, with a mean of 1.4% recent mortality. Coral diseases affected 6.4% of all colonies, with the highest prevalence at Cabrits West (11.0%), Douglas Bay (12.2%) and Coconut Outer reef (20.7%). White plague and yellow band disease were causing the greatest loss of tissue, especially among M. annularis (complex), with localized impacts from corallivores, overgrowth by macroalgae, storm damage and sedimentation. While the reefs appeared to be undergoing substantial decline, restoration efforts by OlD were unlikely to promote recovery. No Pacific species were identified at OID restoration sites, yet species chosen for transplantation with highest survival included short-lived brooders (Agaricia and Porites) that were abundant in restoration sites, as well as non-reef builders (Palythoa and Erythropodium) that monopolize substrates and overgrow corals. The species of highest value for restoration (massive broadcast spawners) showed low survivorship and unrestored populations of these species were most affected by biotic stressors and human impacts, all of which need to be addressed to enhance survival of outplants. Problems with culture practices at OID, such as high water temperature, adequate light levels and persistent overgrowth by macroalgae could be addressed through simple modifications. Nevertheless, coral disease and other stressors are of major concern to the most important reef builders, as these species are less amenable to restoration, collection could threaten their survival and losses require decades to centuries to replace.     

Effects of substrata, resident conspecifics and damselfish on the settlement and recruitment of the stoplight parrotfish, Sparisoma viride

Recruitment plays an important role in the population dynamics of marine organisms and is often quantified as a surrogate for settlement. When quantified, recruitment includes settlement plus a period of time in the benthic habitat. Therefore, it is essential to determine whether post-settlement processes alter patterns established at settlement. I conducted a series of experiments on 2.0 m² patch reefs to examine the importance of pre- and post-settlement processes to the distribution and abundance of recruits of the stoplight parrotfish, Sparisoma viride, on the Tague Bay reef, St. Croix, USVI. Recruitment was higher to the coral Porites porites than to another common coral Montastrea annularis, but there was no evidence of microhabitat choice at settlement. This result, in conjunction with the examination of the size classes of recruits present on P. porites and M. annularis patch reefs in a separate experiment suggested that differences in recruitment were established after settlement. Stoplights settled in higher numbers to patch reefs that contained conspecific residents, and persistence was higher at higher recruit density. Although resident damselfish directed significant amounts of agonistic behavior towards newly stoplight recruits, damselfish presence had no effect on settlement. However, damselfish presence did reduce stoplight recruitment. These results demonstrate that both pre- and post-settlement processes influence the recruitment of stoplight parrotfish. More importantly, these results indicate that benthic processes can alter recruitment patterns from initial settlement patterns, and indicate that workers should be careful in using recruitment as a proxy for settlement.     

Mixed asexual and sexual reproduction in the Indo‐Pacific reef coral Pocillopora damicornis

Pocillopora damicornis is one of the best studied reef‐building corals, yet it's somewhat unique reproductive strategy remains poorly understood. Genetic studies indicate that P. damicornis larvae are produced almost exclusively parthenogenetically, and yet population genetic surveys suggest frequent sexual reproduction. Using microsatellite data from over 580 larvae from 13 colonies, we demonstrate that P. damicornis displays a mixed reproductive strategy where sexual and asexual larvae are produced simultaneously within the same colony. The majority of larvae were parthenogenetic (94%), but most colonies (10 of the 13) produced a subset of their larvae sexually. Logistic regression indicates that the proportion of sexual larvae varied significantly with colony size, cycle day, and calendar day. In particular, the decrease in sexual larvae with colony size suggests that the mixed reproductive strategy changes across the life of the coral. This unique shift in reproductive strategy leads to increasingly asexual replications of successful genotypes, which (in contrast to exclusive parthenogens) have already contributed to the recombinant gene pool.     

Monitoring the coral disease, plague type II, on coral reefs in St. John, U.S. Virgin Islands

In July 1997, conspicuous white patches of necrotic tissue and bare skeleton began to appear on scleractinian corals in several bays around St. John, US Virgin Islands. Analysis of diseased coral tissue from five different species confirmed the presence of a Sphingomonas-like bacterium, the pathogen for plague type II. To date, 14 species of hard corals have been affected by plague type II around St. John. This disease was monitored at Haulover and Tektite Reefs at depths of 7-12 meters. The study site at Tektite Reef has > 50% cover by scleractinian corals with 90% of hard corals being composed of Montastraea annularis. Monthly surveys at Tektite Reef from December 1997 to May 2001 documented new incidence of disease (bare white patches of skeleton) every month with associated loss of living coral and 90.5% of all disease patches occurred on M. annularis. The frequency of disease within transects ranged from 3 to 58%, and the area of disease patches ranged from 0.25 to 9000 cm2. The average percent cover by the disease within 1 m2 ranged from 0.01% (+/- 0.04 SD) to 1.74% (+/- 9.08 SD). Photo-monitoring of 28 diseased corals of 9 species begun in September 1997 at Haulover Reef revealed no recovery of diseased portions with all necrotic tissue being overgrown rapidly by turf algae, usually within less than one month. Most coral colonies suffered partial mortality. Very limited recruitment (e.g., of Agaricia spp., Favia spp. and sponges) has been noted on the diseased areas. This coral disease has the potential to cause more loss of live coral on St. John reefs than any other stress to date because it targets the dominant reef building species, M. annularis.     

The role of sexual and asexual reproduction in structuring high latitude populations of the reef coral Pocillopora damicornis

The genotypic composition of populations of the asexually viviparous coral Pocillopora damicornis varies in a manner that challenges classical models of the roles of sexual and asexual reproduction. On the geographically isolated Hawaiian reefs and high latitude reefs in Western Australia, P. damicornis populations are highly clonal although it has been argued that sexual reproduction via broadcast spawning generates widely dispersed colonists. In contrast, on eastern Australia's tropical Great Barrier Reef populations show little evidence of clonality. Here, we compare the genotypic diversity of adult and juvenile colonies of P. damicornis at seven sites on eastern Australia's high latitude Lord Howe Island reefs to determine if levels of clonality vary with habitat heterogeneity and age of colonies (as predicted by theory) or alternatively if clonality is again always high as for other isolated reef systems. We found 55-100% of the genotypic diversity expected for random mating at all seven sites and little evidence of asexual recruitment irrespective of habitat heterogeneity (sheltered versus wave exposed) or colony age. We found reduced levels of genetic diversity compared with tropical reefs (2.75 versus 4 alleles/locus), which supports earlier findings that Lord Howe Island is an isolated reef system. Furthermore, heterozygote deficits coupled with significant genetic subdivision among sites (FST=0.102+/-0.03) is typical of populations that have limited larval connections and are inbred. We conclude that the genetic structure of P. damicornis at Lord Howe Island reflects populations that are maintained through localised recruitment of sexually produced larvae.     

Demography of the demosponge Amphimedon compressa: Evaluation of the importance of sexual versus asexual recruitment to its population dynamics

We used size-based population matrix models to describe the demography of the demosponge Amphimedon compressa. The relative importance of growth, survivorship, and recruitment to population growth (λ) was assessed by performing elasticity and life table response experiment (LTRE) analyses. We also evaluated the relative contribution of sexual and asexual recruitment to λ by analyzing four different scenarios: (1) the combined impact of sexual and asexual recruitment, (2) the impact of only sexual recruits, (3) the impact of only asexual fragmentation, and (4) the impact of no recruitment. Size-based transition matrices were parameterized with field data collected at two sites in the southwest coast of Puerto Rico: Media Luna West (MLW), a reef exposed to high water movement and at Las Pelotas (LP), a reef experiencing low water motion. Estimated λ of 0.8940 and 0.7973 at MLW and LP respectively suggest that both populations are declining. Elasticity analysis indicated that survivorship may be the most important contributor to λ at both sites. However, λ at MLW was influenced more by the survivorship of small individuals whereas survivorship of the large size-class contributed the most to λ at LP. LTRE analysis indicates that the difference in λ between sites was mostly due to difference in survivorship of small sponges. At both sites, λ decreased considerably when sexual recruitment was excluded from the model whereas the absence of asexual recruitment barely changed λ. Therefore, it is suggested that sexual recruitment plays a major role (in comparison to asexual fragmentation) in the population dynamics of this sponge at the studied sites. We conclude that spatial variability in water motion plays an important role in population dynamics of A. compressa by influencing survivorship patterns, including the relative contribution of asexual and sexual recruitment to population growth.     

Restoration Strategies for Coral Reefs Damaged by Recreational Activities: The Use of Sexual and Asexual Recruits

The unique marine ecosystems of coral reefs express varying levels of degradation as a result of increasing anthropogenic pressures. This is the main reason why more than 200 coral reef localities were proclaimed as natural reserves or marine parks under varying legislation, rules, and monitoring and management programs. Ironically, the conventional management plans increased accessibility to many reef localities and enhanced dramatically the impact of tourism on reef habitats. Recreational activities including SCUBA and skin diving, fishing, human trampling, sediment re-suspension, and other damage caused by “innocent” visitors are causing a rapid deterioration of many reefs. Their destruction requires years and decades for full recovery. I propose to rehabilitate such damaged habitats by the alternate strategy of “gardening coral reefs” with asexual and sexual recruits. Coral branches, colony fragments, and whole small colonies (asexual recruits) and laboratory or in situ settled planula-larvae (sexual recruits) are designed to be transplanted into denuded reefs for restoration. This approach is further improved when the sexual and asexual recruits are maricultured in situ within special protected areas, before being transplanted. The use of sexual recruits ensures an increase in genetic diversity. I discuss several methodologies and results already accumulated showing the applicability of this gardening strategy for rehabilitation of denuded coral reefs. This restoration strategy should be integrated with proper management similar to that of already established reforestation in terrestrial habitats. The best candidates for employing this strategy are the fast-growing coral species, usually branching forms and species that brood their planulae larvae.     

Genetic variation, disequilibrium and natural selection on reproductive traits in Allium vineale

Bulbils and seeds collected from Allium vineale plants from natural populations were grown under uniform conditions. The bulbil-derived offspring represented the parental generation, whereas the seed-derived offspring represented the sexually produced offspring generation. Molecular markers were used to identify maternal genets. Variation in traits determining the allocation to sexual and asexual reproduction was partitioned among genets and ramet families in the parental and offspring generations. From observations of a release of genetic variation and slippage in the mean phenotype in the offspring generation, we inferred that there exists extensive genetic disequilibrium for reproductive traits in A. vineale populations, that most of the genetic variance is because of dominance effects, and that natural selection favours a reduced allocation to sexual reproduction. No genetic correlation between sexual and asexual allocation traits was found. We discuss the implications of these results with respect to the evolution of a mixed reproductive system in A. vineale.     

Fine-scale clonal structure and diversity within patches of a clone-forming dioecious shrub, Ilex leucoclada (Aquifoliaceae)

BACKGROUND AND AIMS: The mode of reproduction (sexual vs. asexual) is likely to have important effects on genetic variation and its spatial distribution within plant populations. An investigation was undertaken of fine-scale clonal structure and diversity within patches of Ilex leucoclada (a clone-forming dioecious shrub). METHODS: Six patches were selected in a 1-ha plot previously established in an old-growth beech forest. Two of the selected patches were composed predominantly of stems with male flowers (male patch), and two contained stems with predominantly female flowers (female patch). The remaining two patches contained stems with male flowers and stems with female flowers in more or less equal proportions (mixed patch). Different genets were distinguished using random amplified polymorphic DNA (RAPD) markers. KEY RESULTS: One hundred and fifty-six genets with different RAPD phenotypes were identified among 1928 stems from the six patches. Among the six patches, the male patches had the lowest clonal diversity, and the mixed patches had the highest. Distribution maps of the genets showed that they extended downhill, reflecting natural layering that occurred when stems were pressed to the ground by heavy snow. In every patch, there were a few large genets with many stems and many small genets with a few stems. CONCLUSION: The differences in clonal diversity among patches may be due to differences in seedling recruitment frequencies. The skewed distribution of genet size (defined as the number of stems per genet) within patches may be due to differences in the timing of germination, or age (with early-establishing genets having clear advantages for acquiring resources) and/or intraspecific competition.     

Causes and consequences of large clonal assemblies in a poplar hybrid zone

Asexual reproduction is a common and fundamental mode of reproduction in plants. Although persistence in adverse conditions underlies most known cases of clonal dominance, proximal genetic drivers remain unclear, in particular for populations dominated by a few large clones. In this study, we studied a clonal population of the riparian tree Populus alba in the Douro river basin (northwestern Iberian Peninsula) where it hybridizes with Populus tremula, a species that grows in highly contrasted ecological conditions. We used 73 nuclear microsatellites to test whether genomic background (species ancestry) is a relevant cause of clonal success, and to assess the evolutionary consequences of clonal dominance by a few genets. Additional genotyping‐by‐sequencing data were produced to estimate the age of the largest clones. We found that a few ancient (over a few thousand years old) and widespread genets dominate the population, both in terms of clone size and number of sexual offspring produced. Interestingly, large clones possessed two genomic regions introgressed from P. tremula, which may have favoured their spread under stressful environmental conditions. At the population level, the spread of large genets was accompanied by an overall ancient (>0.1 Myr) but soft decline of effective population size. Despite this decrease, and the high clonality and dominance of sexual reproduction by large clones, the Douro hybrid zone still displays considerable genetic diversity and low inbreeding. This suggests that even in extreme cases as in the Douro, asexual and sexual dominance of a few large, geographically extended individuals does not threaten population survival.     

Fine‐scale asexual and sexual reproduction in Quercus crispula var. horikawae,a stunted shrub oak,on a mountain with deep snow in central Japan

Quercus crispula var. horikawae, a stunted shrub oak, occurs on mountains with deep snow on the Sea of Japan side of Japan. This oak generates patches of multiple creeping stems. It is unclear whether these patches are the result of asexual or sexual reproduction, or both. We therefore aimed to describe the clonal structure and gene flow in Q . crispula var. horikawae on Mount Nasu in central Japan by using nuclear microsatellites. Genotypes of 331 stems with no distinct connection with roots and creeping stems above the ground were determined using nine loci in two study plots, and 64 acorns from three mother genets in a plot were determined using eight loci. The results of the clonal identification indicated that the patches consisted of 51 genets; at least 85% of the stems may have been derived from asexual reproduction through sprouting and layering. The prominence of asexual reproduction may be a result of adaptation to the snowy environment. In contrast, 15% of the ramets in the study plots probably originate via sexual reproduction by seedling regeneration. Analyses of the spatial genetic structure and paternity showed that limited ability of the pollen and seeds to disperse might result in the spatial aggregations of closely related offspring at a relatively short distance (<10 m), and inbreeding, a factor that might reduce sexual reproduction, was not observed. Thus, sexual reproduction could be reduced by ecological rather than genetic factors, namely the hindrance of seedling regeneration by the dense coverage of dwarf bamboo (Sasa) on the forest floor.     

What drives phenotypic divergence among coral clonemates of Acropora palmata?

Evolutionary rescue of populations depends on their ability to produce phenotypic variation that is heritable and adaptive. DNA mutations are the best understood mechanisms to create phenotypic variation, but other, less well‐studied mechanisms exist. Marine benthic foundation species provide opportunities to study these mechanisms because many are dominated by isogenic stands produced through asexual reproduction. For example, Caribbean acroporid corals are long lived and reproduce asexually via breakage of branches. Fragmentation is often the dominant mode of local population maintenance. Thus, large genets with many ramets (colonies) are common. Here, we observed phenotypic variation in stress responses within genets following the coral bleaching events in 2014 and 2015 caused by high water temperatures. This was not due to genetic variation in their symbiotic dinoflagellates (Symbiodinium “fitti”) because each genet of this coral species typically harbours a single strain of S. “fitti”. Characterization of the microbiome via 16S tag sequencing correlated the abundance of only two microbiome members (Tepidiphilus, Endozoicomonas) with a bleaching response. Epigenetic changes were significantly correlated with the host's genetic background, the location of the sampled polyps within the colonies (e.g., branch vs. base of colony), and differences in the colonies’ condition during the bleaching event. We conclude that long‐term microenvironmental differences led to changes in the way the ramets methylated their genomes, contributing to the differential bleaching response. However, most of the variation in differential bleaching response among clonemates of Acropora palmata remains unexplained. This research provides novel data and hypotheses to help understand intragenet variability in stress phenotypes of sessile marine species.     

Clonal dynamics in western North American aspen (Populus tremuloides)

Clonality is a common phenomenon in plants, allowing genets to persist asexually for much longer periods of time than ramets. The relative frequency of sexual vs. asexual reproduction determines long‐term dominance and persistence of clonal plants at the landscape scale. One of the most familiar and valued clonal plants in North America is aspen (Populus tremuloides). Previous researchers have suggested that aspen in xeric landscapes of the intermountain west represent genets of great chronological age, maintained via clonal expansion in the near absence of sexual reproduction. We synthesized microsatellite data from 1371 ramets in two large sampling grids in Utah. We found a surprisingly large number of distinct genets, some covering large spatial areas, but most represented by only one to a few individual ramets at a sampling scale of 50 m. In general, multi‐ramet genets were spatially cohesive, although some genets appear to be fragmented remnants of much larger clones. We conclude that recent sexual reproduction in these landscapes is a stronger contributor to standing genetic variation at the population level than the accumulation of somatic mutations, and that even some of the spatially large clones may not be as ancient as previously supposed. Further, a striking majority of the largest genets in both study areas had three alleles at one or more loci, suggesting triploidy or aneuploidy. These genets tended to be spatially clustered but not closely related. Together, these findings substantially advance our understanding of clonal dynamics in western North American aspen, and set the stage for a broad range of future studies.