Methodological considerations for conducting tumor surveys of fishes

The usefulness of tumor surveys in indicating the availability of carcinogenic contaminants in ecosystems hinges largely on decisions made during the planning process. Species used as indicator organisms for monitoring programs are best selected from those known to be susceptible to epizootics of neoplasms. Lesions which can be quickly located and preserved in the field and for which a data base exists to help interpretation include liver neoplasms and external neoplasms. Since tumor frequencies increase with age and may change from season to season, studies should hold these variables constant among locations. During the design of the study investigators should determine the number of fish they need to examine in order to achieve the degree of resolution desired. Finally the field crew must be familiar with fish anatomy and necropsy techniques as well as storage and handling of the chosen preservative.     

Social recognition in wild fish populations

The ability of animals to gather information about their social and physical environment is essential for their ecological function. Odour cues are an important component of this information gathering across taxa. Recent laboratory studies have revealed the importance of flexible chemical cues in facilitating social recognition of fishes. These cues are known to be mediated by recent habitat experience and fishes are attracted to individuals that smell like themselves. However, to be relevant to wild populations, where animals may move and forage freely, these cues would have to be temporally flexible and allow spatial resolution. Here, we present data from a study of social recognition in wild populations of three-spined sticklebacks (Gasterosteus aculeatus). Focal fish preferentially associated with conspecifics from the same habitat as themselves. These preferences were changed and updated following translocation of the focal fish to a different site. Further investigation revealed that association preferences changed after 3 h of exposure to different habitat cues. In addition to temporal flexibility, the cues also allowed a high degree of spatial resolution: fish taken from sites 200 m apart produced cues that were sufficiently different to enable the focal fish to discriminate and associate with fish captured near their own home site. The adaptive benefits of this social recognition mechanism remain unclear, though they may allow fish to orient within their social environment and gain current local information.     

The use of histopathological indicators to evaluate contaminant-related stress in fish

As a component of a large research program toevaluate the effects of contaminants on fish healthin the field, histopathological studies have beenconducted to help establish causal relationshipsbetween contaminant exposure and various biologicalresponses. Brown trout (Salmo trutta f. fario)and loach (Barbatula barbatula) were exposedto water diverted from polluted streams undersemi-field conditions at various times during theyear. The histopathological studies revealedseasonal differences in the types and severity oforgan lesions between fish of the two streams. Bothtoxicant-induced alterations and organ lesionsresulting from natural stressors (physicochemicaland limnological water parameters) and secondarystress effects of pollution (diseases) could bedetected. In evaluating the general health ofexperimental and control fish, the use ofhistopathological studies are recommended for makingmore reliable assessments of biochemical responsesin fish exposed to a variety of environmentalstressors. Stereological analysis providesquantitative data on pathological lesions whichhelps to establish correlation with other biomarkersthereby increasing the probability of identifyingcause (stressor) and effect (biomarker) relationships.     

Pedigree reconstruction in wild cichlid fish populations

It is common practice to use microsatellites to detect parents and their offspring in wild and captive populations, in order to reconstruct a pedigree. However, correct inference is often constrained by a number of factors, including the absence of demographic data and ignorance regarding the completeness of parental sampling. Here we present a new Bayesian estimator that simultaneously estimates the pedigree and the size of the unsampled population. The method is robust to genotyping error, and can estimate pedigrees in the absence of demographic data. Using a large-scale microsatellite assay in four wild cichlid fish populations of Lake Tanganyika (1000 individuals in total), we assess the performance of the Bayesian estimator against the most popular assignment program, Cervus. We found small but significant pedigrees in each of the tested populations using the Bayesian procedure, but Cervus had very high type I error rates when the size of the unsampled population was assumed to be lower than what it was. The need of pedigree relationships to infer adaptive processes in natural populations places strong constraints on sampling design and identification of multigenerational pedigrees in natural populations.     

The use of geographic information systems to map and assess ecosystem services

In recent years, geographic information systems (GIS) have become a powerful tool for mapping and assessing the provision of ecosystem services within a landscape. GIS can help land managers and conservationists visualize spatial and temporal patterns and changes in ecosystem services and estimate the potential impact from projected changes in land use or management or climatic conditions on the provision of these services. The end-goal of ecosystem service assessment is usually to estimate marginal values of ecosystem services to inform decisions where trade-offs in ecosystem service provision will affect human well-being. Because our ability to estimate the provision of ecosystem services underlies our ability to estimate their societal values, the theoretical bases of GIS approaches and models for assessing ecosystem services need to be well understood before they are employed for decision-making purposes. This paper reviews GIS approaches and software developed for the assessment of ecosystem services and highlights their strengths and weaknesses in the context of different end uses.     

Evidence of melanoma in wild marine fish populations

The increase in reports of novel diseases in a wide range of ecosystems, both terrestrial and marine, has been linked to many factors including exposure to novel pathogens and changes in the global climate. Prevalence of skin cancer in particular has been found to be increasing in humans, but has not been reported in wild fish before. Here we report extensive melanosis and melanoma (skin cancer) in wild populations of an iconic, commercially-important marine fish, the coral trout Plectropomus leopardus. The syndrome reported here has strong similarities to previous studies associated with UV induced melanomas in the well-established laboratory fish model Xiphophorus. Relatively high prevalence rates of this syndrome (15%) were recorded at two offshore sites in the Great Barrier Reef Marine Park (GBRMP). In the absence of microbial pathogens and given the strong similarities to the UV-induced melanomas, we conclude that the likely cause was environmental exposure to UV radiation. Further studies are needed to establish the large scale distribution of the syndrome and confirm that the lesions reported here are the same as the melanoma in Xiphophorus, by assessing mutation of the EGFR gene, Xmrk. Furthermore, research on the potential links of this syndrome to increases in UV radiation from stratospheric ozone depletion needs to be completed.     

Ultrastructural changes in fish gills as biomarker to assess small stream pollution

In order to verify the principal suitability of gill ultrastructure as a biomarker, semi-field studies with two endigoneous fish, trout (Salmo trutta f. fario) and loach (Barbatula barbatula), were performed. The fish were exposed in flow-through systems to one heavily polluted (K?rsch) and one lightly polluted small stream (Kr?henbach) in South-West Germany. Ultrastructural responses in gills were correlated with limnological and chemical data recorded over a 2 year period in each stream. After 8 weeks of exposure to the heavily polluted stream, fish showed ultrastructural changes in the gills, such as cell proliferation, dilation of the endoplasmic reticulum, hyperplasia, hypersecretion, and epithelial lifting in chloride, epithelial, and mucus cells. The results of the study demonstrate that ultrastructural reactions in the gills of fish kept under semi-field conditions are potentially useful biomarkers indicating small stream pollution.     

The use of isoelectric focusing to assess percentage hymenopterous parasitism in aphid populations

The primary parasitoid Aphidius uzbekistanicus Luzhetski and its host, the cereal aphid Sitobion avenae (F.) both showed specific bands for the enzyme malate dehydrogenase (MDH), thereby allowing clear detection of parasitism. The specific profiles of MDH activities remained recognizable through all post-embryonal life-stages, but the intensity of staining depended on the instar and morph subjected to analysis. A calibrated equation, representing the relationship between percentage parasitoid-specific MDH activity and percentage parasitism, was elaborated for third instar S. avenae. This equation was, however, not applicable to field-collected material. Reasons for this failure and the possible use of isolectric focusing (IEF) for other parasitoid: host relationships are discussed.

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Zusammenfassung Die herkömmlichen Methoden zur Bestimmung der Parasitierungsrate bei Blattläusen sind zeit- und arbeitsaufwendig, so daß sich meist nur ein geringer Stichprobenumfang bearbeiten läßt. Wir haben daher untersucht, ob die Parasitierung größerer Blattlauskollektive mittels der isoelektrischen Fokussierung (IEF) schnell und verläßlich zu ermitteln ist, wobei wir die Malatdehydrogenase (MDH) als Enzymsystem wählten.Die Modellpopulationen (der Parasitoid Aphidius uzbekistanicus und die Wirtsblattlaus Sitobion avenae) zeigten in allen Stadien und Morphen spezifische Bandenprofile, die ein Erkennen parasitierter Blattläuse eindeutig ermöglichten. Die Intensität der Färbung hing aber von den untersuchten Larvenstadien ab, d.h. ältere, größere Tiere ergaben quantitativ bedeutendere Enzymaktivitäten als jüngere, kleinere.Bei S. avenae wurde dieser Sachverhalt noch von der jeweiligen Morphenzugehörigkeit überlagert: alatiforme Stadien bewirkten stärkere Färbungsintensitäten als apteriforme. Dieses ist wahrscheinlich auf die Anhäufung von MDH-reichen Mitochondrien in der Flugmuskulatur zurückzuführen.Durch eine densitometerische Auswertung war es uns möglich, den relativen Anteil des parasitoidenspezifischen Peaks einer Probe mit dem jeweiligen (bekannten) Parasitierungsgrad in Beziehung zu setzen. Zwischen dem kleinsten und größten Larvenstadium des Parasitoiden ergab sich dabei eine bestimmte Spanne für einen gegebenen Parasitierungsgrad.Mit diesen Werten haben wir eine auf Feldbedingungen ausgerichtete, simulierte Gleichung errechnet, die wir auf Freilandblattläuse mit bekanntem Parasitierungsgrad anwendeten. Um den Einfluß der Stadienzugehörigkeit auszuschalten, wurden nur Blattläuse im dritten Stadium untersucht.Die Verteilung der Larvenstadien der Parasitoiden erwies sich aber als zu heterogen, so daß die errechneten Werte nur in zwei von neun Proben mit den durch Zuchtansätze ermittelten Werten übereinstimmten. In anderen Wirt-Parasitoid-Systemen mit ausgeprägter Stadienspezifität und demzufolge synchroner Entwicklung könnte die IEF aber durchaus von großem Nutzen sein.

     

A review of methods for estimating mortality due to parasites in wild fish populations

Six methods are described for detecting mortality due to parasitic infections in natural fish populations. They are: (a) through autopsies; (b) by determining the frequency of infections known to be eventually lethal; (c) by observing a decrease in the prevalence of a long-lived parasite (or permanent scar from a parasite) with host age; (d) by observing a decrease in the variance/mean ratio for the parasites with host age; (e) by comparing the observed frequency of a combination of two independent events with the calculated probability of their occurrence; and finally (f) by comparing the observed frequency distribution of the parasite, with a projected frequency based on data from lightly infected fish. In this technique, negative binomials are fitted to the data and truncated at various points. Some advantages and disadvantages of the different methods are given, together with examples. The methods do not necessarily provide definitive answers, but they are indicative of whether or not significant parasite-related mortality may be occurring, and in some cases provide an estimate of its probable magnitude in terms of the total host mortality rate.     

The dynamics of health in wild field vole populations: a haematological perspective

1. Pathogens have been proposed as potentially important drivers of population dynamics, but while a few studies have investigated the impact of specific pathogens, the wealth of information provided by general indices of health has hardly been exploited. By evaluating haematological parameters in wild populations, our knowledge of the dynamics of health and infection may be better understood. 2. Here, haematological dynamics in natural populations of field voles are investigated to determine environmental and host factors associated with indicators of inflammatory response (counts of monocytes and neutrophils) and of condition: measures of immunological investment (lymphocyte counts) and aerobic capacity (red blood cell counts). 3. Individuals from three field vole populations were sampled monthly for 2 years. Comparisons with individuals kept under controlled conditions facilitated interpretation of field data. Mixed effects models were developed for each cell type to evaluate separately the effects of various factors on post-juvenile voles and mature breeding females. 4. There were three well-characterized 'physiological' seasons. The immunological investment appeared lowest in winter (lowest lymphocyte counts), but red blood cells were at their highest levels and indices of inflammatory response at their lowest. Spring was characterized by a fall in red blood cell counts and peaks in indicators of inflammatory response. During the course of summer-autumn, red blood cell counts recovered, the immunological investment increased and the indicators of inflammatory response decreased. 5. Poor body condition appeared to affect the inflammatory response (lower neutrophil and monocyte peaks) and the immunological investment (lower lymphocyte counts), providing evidence that the capacity to fight infection is dependent upon host condition. 6. Breeding early in the year was most likely in females in better condition (high lymphocyte and red blood cell counts). 7. All the haematological parameters were affected adversely by high population densities.     

Predicting infestation parameters and impacts of caligid copepods in wild and cultured fish populations

Summary

The intensity and timing of infestation events of caligid copepods in wild or cultured fish populations may be predicted from previous local production of nauplius I of the parasite. However, this relationship is not well established, the spatial scales over which it operates are unclear, and the role of host reactions to the invading copepodid is unknown. Rate of development (and population structure), generation time and rate and actual reproductive output are temperature-dependent. In Ireland between five and seven generations of Lepeophtheirus salmonis (Krøyer) can develop annually and generation time varies from over 120 days in winter to 23 days in summer. Host reactions may affect the rate of development of the parasite but are less important than temperature. Host reactions may also cause parasite mortality, but this effect is specific for individual host parasite associations. The distribution of L. salmonis in cultured host populations is typically normal but is very over-dispersed in wild populations with heavy infestations. Parasiteinduced morphological damage to the host is correlated with physiological impacts. Physiological effects are present even when morphological damage is slight and so intermittent chemotherapeutic control of infestations cannot prevent some parasite impact from occurring.     

"Instantaneous" growth rates of fish scales and their use in studies of fish populations

A technique has been devised for measuring the incorporation of ¹⁴C-glycine into fish scales. This provides an indication of the rate of growth of the scale at the time of sampling. The growth of fish scales is classically considered to be related to the growth of the whole fish' hence the method devised has been used to investigate aspects of fish growth in a number of environmental situations.     

The use of actimetry to assess changes to the rest-activity cycle

The endogenous circadian oscillator (the body clock) is slow to adjust to altered rest-activity patterns. As a result, several negative consequences arise during night work and after time-zone transitions. The process of adjustment can be assessed by measurements of the sleep electroencephalogram (EEG), core temperature or melatonin secretion, for example, but these techniques are very difficult to apply in field studies, and make very great demands upon both experimenters and subjects. We have sought to establish if the activity record, measured conveniently and unobtrusively by a monitor attached to the wrist, can be treated in ways that enable estimates to be made of the disruption caused by changes to the rest-activity cycle, and the process of adjustment to them. In Part A, we describe the calculation and assessment of a series of “activity indices” that measure the overall activity pattern, activity when out of bed or in bed, or the activity in the hours adjacent to going to bed or getting up. The value of the indices was assessed by measuring changes to them in subjects undergoing night work or undergoing time-zone transitions. In both cases, there is a large body of literature describing the changes that would be expected. First, night workers (working 2 to 4 successive night shifts) were investigated during rest days and night shifts. The indices indicated that night work was associated with lower activity when the subjects were out of bed and higher activity when in bed. Some indices also measured when subjects took an afternoon nap before starting a series of night shifts and gave information about the process of adjustment to night work and recovery from it. Second, in studies from travelers crossing six or more time zones to the east or west, the indices indicated that there were changes to the rest-activity cycle immediately after the flights, both in its overall profile and when activity of the subjects in bed or out of bed was considered, and that adjustment took place on subsequent days. By focusing on those indices describing the activity records during the last hour in bed (LHIB) and the first hour out of bed (FHOB), some evidence was found for incomplete adjustment of the body clock, and for differences between westward and eastward flights. In Part B, the battery of indices are applied to the activity records of long-haul pilots, whose activity patterns showed a mixture of effects due to night work and time-zone transitions. Actimetry was performed during the flights themselves and during the layover days (which were either rest or work days). The indices indicated that all pilots had disrupted rest-activity cycles caused by night flights, and that there were added problems for those who had also undergone time-zone transitions. Rest days were valuable for normalizing the activity profile. For those pilots who flew to the west, adjustment was by delay, though not all aspects of the rest-activity cycle adjusted immediately; for those who flew to the east, some attempted to advance their rest-activity cycle while others maintained home-based activity profiles. The indices indicated that the activity profile was disrupted more in those pilots who attempted to advance their rest-activity cycle. We conclude that objective estimates of the disruption caused to the rest-activity cycle and the circadian system can be obtained by suitable analysis of the activity record.     

Validation of a randomization procedure to assess animal habitat preferences: microhabitat use of tiger sharks in a seagrass ecosystem

1. Tiger sharks Galeocerdo cuvier are important predators in a variety of nearshore communities, including the seagrass ecosystem of Shark Bay, Western Australia. Because tiger sharks are known to influence spatial distributions of multiple prey species, it is important to understand how they use habitats at a variety of spatial scales. We used a combination of catch rates and acoustic tracking to determine tiger shark microhabitat use in Shark Bay. 2. Comparing habitat-use data from tracking against the null hypothesis of no habitat preference is hindered in Shark Bay, as elsewhere, by the difficulty of defining expected habitat use given random movement. We used randomization procedures to generate expected habitat use in the absence of habitat preference and expected habitat use differences among groups (e.g. males and females). We tested the performance of these protocols using simulated data sets with known habitat preferences. 3. The technique correctly classified sets of simulated tracks as displaying a preference or not and was a conservative test for differences in habitat preferences between subgroups of tracks (e.g. males vs. females). 4. Sharks preferred shallow habitats over deep ones, and preferred shallow edge microhabitats over shallow interior ones. The use of shallow edges likely increases encounter rates with potential prey and may have profound consequences for the dynamics of Shark Bay's seagrass ecosystem through indirect effects transmitted by grazers that are common prey of tiger sharks. 5. Females showed a greater tendency to use shallow edge microhabitats than did males; this pattern was not detected by traditional analysis techniques. 6. The randomization procedures presented here are applicable to many field studies that use tracking by allowing researchers both to determine overall habitat preferences and to identify differences in habitat use between groups within their sample.     

The use of stable isotopes to study ecosystem gas exchange

Stable isotopes are a powerful research tool in environmental sciences and their use in ecosystem research is increasing. In this review we introduce and discuss the relevant details underlying the use of carbon and oxygen isotopic compositions in ecosystem gas exchange research. The current use and potential developments of stable isotope measurements together with concentration and flux measurements of CO₂ and water vapor are emphasized. For these applications it is critical to know the isotopic identity of specific ecosystem components such as the isotopic composition of CO₂, organic matter, liquid water, and water vapor, as well as the associated isotopic fractionations, in the soil-plant- atmosphere system. Combining stable isotopes and concentration measurements is very effective through the use of ”Keeling plots.” This approach allows the identification of the isotopic composition and the contribution of ecosystem, or ecosystem components, to the exchange fluxes with the atmosphere. It also allows the estimation of net ecosystem discrimination and soil disequilibrium effects. Recent modifications of the Keeling plot approach permit examination of CO₂ recycling in ecosystems. Combining stable isotopes with dynamic flux measurements requires precision in isotopic sampling and analysis, which is currently at the limit of detection. Combined with the micrometeorological gradient approach (applicable mostly in grasslands and crop fields), stable isotope measurements allow separation of net CO₂ exchange into photosynthetic and soil respiration components, and the evapotranspiration flux into soil evaporation and leaf transpiration. Similar applications in conjunction with eddy correlation techniques (applicable to forests, in addition to grasslands and crop fields) are more demanding, but can potentially be applied in combination with the Keeling plot relationship. The advance and potential in using stable isotope measurements should make their use a standard component in the limited arsenal of ecosystem-scale research tools. Received: 8 July 1999 / Accepted: 10 January 2000     

Using ecosystem models to assess potential consequences of global climatic change

Predicting ecosystem response to climate change is a dynamic version of the classic problem of understanding vegetation-climate interrelations. Computer models can synthesize current knowledge and are important tools for understanding possible ecosystem dynamics under changed conditions. Models based on individual plant biology and natural history have been tested with respect to their ability to simulate vegetation response to changed climate, and are being applied to assess the potential effects of future climate change.     

The use of wild fruits in Zimbabwe

Most peasant households in Zimbabwe use edible fruits of indigenous woody plants. Deforestation does not significantly affect availability of selected fruits, because people tend not to cut selected trees when clearing land for cultivation. A different range of species is used in the different natural regions of Zimbabwe. Fruit use mainly occurs in the periods of seasonal food stress, even though these seasons are not necessarily the periods of maximum fruit abundance. Wild fruits, often the only source of fruit for households, are used mostly by children. There is a significant trade in wild fruits.     

Diagnostic methodology is critical for accurately determining the prevalence of Ichthyophonus infections in wild fish populations

Several different techniques have been employed to detect and identify Ichthyophonus spp. in infected fish hosts; these include macroscopic observation, microscopic examination of tissue squashes, histological evaluation, in vitro culture, and molecular techniques. Examination of the peer-reviewed literature revealed that when more than 1 diagnostic method is used, they often result in significantly different results; for example, when in vitro culture was used to identify infected trout in an experimentally exposed population, 98.7% of infected trout were detected, but when standard histology was used to confirm known infected tissues from wild salmon, it detected ~50% of low-intensity infections and ~85% of high-intensity infections. Other studies on different species reported similar differences. When we examined a possible mechanism to explain the disparity between different diagnostic techniques, we observed non-random distribution of the parasite in 3-dimensionally visualized tissue sections from infected hosts, thus providing a possible explanation for the different sensitivities of commonly used diagnostic techniques. Based on experimental evidence and a review of the peer-reviewed literature, we have concluded that in vitro culture is currently the most accurate diagnostic technique for determining infection prevalence of Ichthyophonus , particularly when the exposure history of the population is not known.